Array 1 322410-320383 **** Predicted by CRISPRDetect 2.4 *** >NC_018721.1 Psychroflexus torquis ATCC 700755, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 322409 46 100.0 29 .............................................. TACTTAATGAAAGTAAACTGCACCTATTG 322334 46 95.7 30 ..................C..C........................ CGACAACGGCACGGAAACTAATATACCGTT AAGG,AGCCTTA [322302,322312] 322247 46 100.0 30 .............................................. GAGATCGGGATCAACTAAAGTTTTAGCCTG 322171 46 100.0 29 .............................................. AATAATATACTATAGTAGTAATAGAATAG 322096 46 100.0 29 .............................................. CTTAAACCGCCTTGACCGTCTCTAATACC 322021 46 100.0 30 .............................................. TTTACATAGTCTATACAGTCGTTGTTTTCT 321945 46 100.0 30 .............................................. TTAAGCGTTATTTATCTTTCTTCATCTTAT 321869 46 100.0 30 .............................................. AAAGAACACTTATATCCACACAAGCTATTT 321793 46 100.0 29 .............................................. AATATCTCGACATAGTAACAAAAAGAGCG 321718 46 100.0 29 .............................................. AATGAAGATCACTTTTACTATGACGGTGT 321643 46 100.0 30 .............................................. AGCACATAACTTTTTAACACAAGAAGGTTT 321567 46 100.0 30 .............................................. AAGAACATTTAAAGCTAAACTTACTGGTAG 321491 46 100.0 30 .............................................. TACCCCTGTTTAGTTTGTTGTATAGATTGT 321415 46 100.0 30 .............................................. AGAAAATCTAAAAAGGATAAATAGCAATAT 321339 46 100.0 30 .............................................. TTAACAGGAGACATTCTTGCTTTTAAAAAT 321263 46 100.0 29 .............................................. CGAATGGATAGAAGTCTGCAAAGTGTTTG 321188 46 100.0 30 .............................................. CTTCTGGGTACTTATCCTTATAAATAGTGT 321112 46 100.0 30 .............................................. AATCCGCTTAACTCTTCCATTGTTTCACAT 321036 46 100.0 30 .............................................. TACTAGCGTAACTATTAATAGTCTTGATGG 320960 46 100.0 30 .............................................. AAGCTGGTTTATATGGGTTCATGTAATGTT 320884 46 100.0 30 .............................................. TTATACCCTATTGTTTACAACGACACAGGG 320808 46 100.0 30 .............................................. CAGAGGGTTGCACGATAGGAATTGGTATAT 320732 46 100.0 30 .............................................. AAAAAGGCGGCGTATTACACCGCCCTAGAT 320656 46 100.0 30 .............................................. TAGCGTAACTATTAATAGCAGTTCAGATGG 320580 46 100.0 30 .............................................. TGCATGCAGTTGTTCCGTAAGGTGGGTCTG 320504 46 100.0 30 .............................................. TTGAATATAAAGAATATGAAATAGATTTCT 320428 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 27 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTATTTTTAGTGATAATTCACAGG # Left flank : TTTGATAACATAGATGTAACTTTTGAAGGTAATCGCTTTGGAATTGAGATAAATCTGCCAGAAGAAGATCTTGAAATTATTTTTAATAAATGGAAGAAGAGTTATAATGAATATGAGTTTAAAGGTTTTAAGTATTATTGGAATTATCATAAATCATCCATTTATGTTTATAAAGACAAACGTTTTGATTGGGATGTTCTAGAAAAAAACAATAAGCTTATAATGAAAAAATTCAAACAAGGGATTGATTTATTAATAAAAAAATATCGTAACATTTCTGGTAAATAAATATTTTAAACATCAACTAAAATATTTGATATTCCTTCTCGTCTGGAATTACCTCTCTAACAACTACGGCATTATTTTCATTGATGATTCCACAGGCTTAGGGTTGCATATAGCTCTACATCTCCGTTGTGAATTGCTTTCATTCCGAAACATCGGAAGTATTTTTAGTGATAATTCACAGGAGCACCAAGTTACAAGGCAAACCGAAATCG # Right flank : GTATAAGCTATAAAAGGCTGATATCCTGTTTTTTATGCAATAAATAGGCTAGGTAAAATGATGTTTTTCAATATTATAAGGAATGAACACTAGCTTTAAAACAATTCTAATTGTTGAGATGGGGAGTCAATATTAGCTTCTTTTTTGCCGTGAAACAATTCTATCATCCCAAATTGTTTATCGGTGATTTGCATAATCCCTACTTTCCCTTTTTTTGGCAGTGACTTTTGAACTCTGTTAATATGTACTTGCATATTTTCTCGGCTGGCACAAAATCGCGTATAGATGGAAAATTGAAACATCCTAAATCCATCATCTAGCAATGATTTTCTAAACCTTGTGGCTGCGCTTCGCTCCACTTTGGTTTCTGTAGGTAAATCAAAAAATACCATTACCCACATAACTCTATATTGATTTAATCTCGATAGTTTGTTTTCCACGTTCCATAATTATTTGGTTATGAATTAAATTCAGGATATAAGAGCCGTCTTGAACTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTTAGTGATAATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTTAGTGATAATTCACAGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 899409-900561 **** Predicted by CRISPRDetect 2.4 *** >NC_018721.1 Psychroflexus torquis ATCC 700755, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 899409 28 85.7 47 ..........T..TG...A......... AAGTAAGGTTACAGATATGGGAGGTATGTTTATTAGTGCAACTTCAC 899484 28 85.7 47 ....T..G..T.......A......... AAGTGGGGTAACTACTATGTATGCTATGTTTAATCAAGCAACTTCAT 899559 28 78.6 47 ..........A..TG.GTC......... AAGTCAAGTTACAAACATGTTTACCATGTTTAATGGTGCAAGTTCAT 899634 28 82.1 47 ..G........A.C...GA......... AAGTAATGTGAATAATATGGCATCTATGTTTAATGAAGCAACTTCAT 899709 28 100.0 47 ............................ GAGTCAAGTGATTGATATGAATGCCATGTTTTATAGTGCAACATCTT 899784 28 82.1 47 ..G..........TG..TC......... AAGCCAAGTCACTGATATGGTATATATGTTTAGGGATGCTACTTCTT 899859 28 85.7 46 ...........T.G...TC......... GAGTAATGTTACTAATATGGGAGGCATGTTTGAGGATGCCTCTTCA 899933 28 78.6 47 ..G.......T..GG...A....A.... AAGTAATGTATCTAATATGAGATTTATGTTTGAGAGTGCATCGTCAT C [899935] 900009 28 92.9 47 .............T....A......... AAGTAATGTAACTGATATGAACTTGATGTTTAATCGAGCAAGCACAT 900084 28 82.1 47 ..G.......T..TG...A......... AAGTAAGGTTACAGATATGGGAGGTATGTTTATTAGTGCAACTTCAC 900159 28 85.7 47 ....T..G..T.......A......... AAGTGGGGTAACTATTATGTATGCTATGTTTAATCAAGCAACTTCAT 900234 28 85.7 47 ...........A.C...GA......... AAGTAATGTGAATAATATGGCATCTATGTTTAATGAAGCAACTTCAT 900309 28 100.0 47 ............................ GAGTCAAGTGATTGATATGAATGCCATGTTTTATAGTGCAACATCTT 900384 28 82.1 47 ..G..........TG..TC......... AAGTAATGTTTCTAATATGGAGTTTATGTTTTCTGAAGCTATTTCTT 900459 28 85.7 47 ..G.T........C....A......... AAGTAATGTTTCTGATATGAGAGGCATGTTTGAGAGTGCAGAGTCAT 900534 28 89.3 0 .............TG...A......... | ========== ====== ====== ====== ============================ =============================================== ================== 16 28 86.4 47 TTAACCAACCCCTAAATAGTTGGGATGT # Left flank : CAAAATTTCTCCATACTCAATAAAATTGCACTAAATTTATTGAAAAATGAAAAATCATTAAAAACAGGGGTGAAGAGCAGAAGACTTCAAGCGGGATGGGACAATCACTATCTGATAAAAGTGCTGAATCTAATGAAAGTTTAATGCGTTTGCCCTGACCTCCAATGCCTTTGATTATGATTTTACAGTAGATTGGGGAGATGGGGAGATAGATCAAAACGTGACAGCAGATATAACTCATGATTATGCTACTCCAGGCACCTATACCGTAAATATTATCGGCGTGTTTCCTTATTTTAAATCCTGTGAAATTGCTACGGGTTTTTCAGACTGCGATAACGCACCAAAACTTAGTAGTATAGAGTCTTGGGGAGATCAAGAATGGCGTGCCATGATAGGAAGTTTCAGAAGTGCAAATAATATGATAATTAACACGCTTCAAGCGCCAAATTTAACTTTCACAACAAGTTTAAAAGAAACTTTTAGAGACGCATCAAGTT # Right flank : TAAGCCGAGTTACTGATATGAGATTTATGTTTAATGACGCTTCATCTTTTAACCAGGATATTTCAATGTGGTGTATAGAGCAAATCCAAGTTGAACCTCAAGGATTTGCTGATAACTCTGCTTTGCAAAACGACTTTTTCCCAAATTGGGGGGCTGCATGTAACTTATCCACAACAAACCCAGACGCTATTGGATTTAATATTCTAATATATCCCAACCCCTCAAATTCGAAGGTGTTTATCGAAAATGATGGGTAAATCATACTTTCTAAAATTAAATTGATTGATATGCTGGGTCGAGACATTAAGACCTTCTCAGCTAGTCAAATAACTCATGGTCTTGATGTTTCAGGTGTGGATGTCGGTAATTATTTTGTTCAGTTTACAACAGTGGATGACCGACAATTTGTAAAGCGATTAATTGTGAAGTAATAATTTATTGTAAAATATTTTAATTAGTAAAGCCTCTACATAAATTGTAGAGGCTTTTTGTTGGGTAAA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.32, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAACCAACCCCTAAATAGTTGGGATGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 2608898-2609328 **** Predicted by CRISPRDetect 2.4 *** >NC_018721.1 Psychroflexus torquis ATCC 700755, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2608898 36 100.0 30 .................................... GAAATCCTGAAAATCAACTATCCTATGAAG 2608964 36 100.0 30 .................................... CATTTGTTCGTTAATTGGCGTAGCACTATC 2609030 36 100.0 30 .................................... CTCTTAATACTCTAAGTGTTAGTTTTGTTT 2609096 36 100.0 30 .................................... TTTGTAGTACATATTAAGAAATGTTAAAAT 2609162 36 100.0 30 .................................... GGTTTTAGTTGCAATCAAAATTGTTTTCGT 2609228 36 97.2 29 A................................... GCATTCTTTTGTTCGCTCCCAGCTTGCAA 2609293 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Left flank : TATGAAACTAAATAGCTACCTCTAACACTTTATTACAGAAGGGAAATCCCAATTTTAAAATGTATGTTTTGAATGGACTTTTAACAGGCATCAAACAAATAAATATAGAGGACTTTATAGTGTTAAAGCAGAATACTAACTTTGATAAAATTGATTTTAAAGGCATAGCATCTTATAGCGTACTTGAAAAAAAGACTATCATTTTAATAGCAATAAGAAATAAGTTTGCTCATAACCAATTGCCTAACAAAATAATAAATGATTTAGCTAATGAATTTGTTAAAAAAGAAAAAAATGAAACCTATGCTAACTATTATTTAAAGGTTTTAAAGAAAATGATTTCTGATTTAGCATAGCATATCTTAAATAAGCTCTTTGACATCCTAAAATTACAAACATAGAAAATGATTATATTTGTAATAGTATAAAGCTATTTGCTCCTTTTTTATTCGTTAAAAAAGAGCTTTACCACTTCATTAACAGGACGTTACAACAGGTAG # Right flank : CTTTTTTGACGTAATAATTCCAAAGCTTTATGTTGTAACTGCATTTTTTAAGGCGCTATAACAGTCAGAAATATTTACAGGAATAAGAAAGAAAGGAAACTTTAGTACTTTTAGAACCCATAGAACACTCCTTATTTGATTGTTCTAAAGATTTACAGATGGAATGAAAACAAGAAAATACATCATAGATCACTGACCGAAAATAAGATTAGTAAATACCTGATTTATGCTATCGATTATATCATCCTCATGGTGAATGAAATCTTGATCGCCTTAAGCATTAATAGCTGGAATGAAAATAACAAATTAGAAAAGGAGACCTATAAAGTACTTTTATAAATGCGAGGTGAATTTTTAAGAAACATATCAAATTTGAAAAAGCCCAACTGCGTTTAGTCTTTTTTTTATTACTTCCAATATCAGGTTGATGATTAAAACATTGTAAATCTGTATTTTAGTTGGATAATTTGGTCTTTTCATCTATTCACTAATTTGGTGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2613484-2614179 **** Predicted by CRISPRDetect 2.4 *** >NC_018721.1 Psychroflexus torquis ATCC 700755, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2613484 36 100.0 30 .................................... CATTCCATACAAGTTTCAACATCATCAATA 2613550 36 100.0 30 .................................... CAGAATCTAATTGCTGATAAGTGTAACTTG 2613616 36 100.0 30 .................................... ACGATGTATTGCCACTATTCAGGCGAATTG 2613682 36 100.0 30 .................................... GTAAGAATGGAAGCTTTAAAACATAAGATT 2613748 36 100.0 30 .................................... CTGAGTACCTACTAAACCTTCTGAAAGAGT 2613814 36 100.0 30 .................................... CATAATATTTATTGTATAAAAAAACCGCTT 2613880 36 97.2 30 ........G........................... GCTTGTGAAGGTGTTGGCAAAGCGTTGAAA 2613946 36 94.4 30 ..............................T...A. ACCAGATTGTATATTTTGTTGTCCTACCGA 2614012 36 94.4 30 .......................A..........A. TTGCGATCCGTGTTGATTAATTGAATCTGG 2614078 36 97.2 30 ..................................A. TAGTTTGCTTCTATCTTTTATTACAGTCGA 2614144 36 97.2 0 ..................................A. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAGC # Left flank : ATTTATGATCATACAACAGACAAAAATATTTTATTACAAGATGGAAATCCCAATTTTAAAATGTATGTTCTGAATGGGCTTTTAATAGGCATCAAACAAGTAAATATACCCGATTTTATAGTGTTAAAGCAGAATACTAACTTTGATAAAATTGATTTTACAGGCATAGCATCTTGTAGCGAACTTGAAAAAAAGACTATCATTTTAATAGCCATAAGAAATAAGTTTGCTCACAACCAATTGCCAAACAAAATGATATACGATTTAGCAAATGAATTTCTTAAAATAGAAAAAAATGAAACCTATGCTAACTATTATTTAAAGGTTTTAAAGAAAATGATTTCAGATTTAGCATAGCATATCTTAAATAAGCTCTTTGACATCCTAAAAATACAAACATATAAAATGATTATATTTGTAATAGTATAAAGCTATTTGCTCCTTTTTATTTGTTAAAAAAGAGCTTTACCACTTCATTAATAGGGCGTTACAACAGGTAG # Right flank : CTTTTTTGACGTAATAATTCCAAAGCTTTATGTTGTAACTGCTTTTTTTAAGGCGCTATGACAGTCAGAAATATTTACAGGAATAAGAAAGAAAAGAAACTTTAGTACTTTTAGAACTCATAGAACACTCCTTACTTGATTGTTCTAAAGATTTATAGATGGAATGAAAACAAGACATCATTAAGAGTGAAAGTATTCAAATAACTTACGAATTGAAAAAGCTGTACTAAATAAACTAACCAAAAAAGAGTCCCATTTTCATGGGAAATTAACTATGATAAAATTCTTTAGAAAAATTCGTCAAAACCTAATCATGGATAAGCAGCCTACTGGACAGGCTGGCAAGACAGGTAACTATTTTAAATACGCTATTGGAGAAATTGTACTGGTGGTGGTTGGGATTTTAATAGCATTATCAATCAACAATTGGAATGAAGCTAGAAAAGCTACTATTTTTGAAGATGAAATATTAAATTTAATAGACCAAAATTTAGAAATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAGC # Alternate repeat : GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //