Array 1 348742-354936 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911557.1 Methylomonas sp. 11b scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348742 29 100.0 32 ............................. CGTGGTGGGAAGATCGAAACAGGCAAACTTGA 348803 29 100.0 32 ............................. CTTAGTTTCACAAGGCCAGCATTTGTTAGAAC 348864 29 100.0 32 ............................. CAACCGGCAAAAATGGCGGCACACGTTGGCTC 348925 29 100.0 32 ............................. GCGTCAAGCGCAGTCTACAGACACGCATGGCA 348986 29 100.0 32 ............................. GAAACGCAATGCGATCTGTTGCAACATCAATA 349047 29 100.0 32 ............................. AAATGACAGCGCACTTCGGCAGACGGCCAAAA 349108 29 100.0 32 ............................. AAATGAGAATTGCGCAAACAGATCGAATGGAG 349169 29 100.0 32 ............................. TTATATGATGAACAGCGCCAAGCCTGTCCTGC 349230 29 100.0 32 ............................. AAACTCGATTCTGGTTGCTTCTTGCTGACAAT 349291 29 100.0 32 ............................. CTTCAGCCATATCTATGAACTGTCGGTCGAAA 349352 29 100.0 32 ............................. TATAGCAGTTCACTAAAAACAAGCGCTAATAC 349413 29 100.0 32 ............................. TGCTTTTGCATGCCCGCCGTCTTTCTTATTGT 349474 29 100.0 32 ............................. TATGGCTATGTCGTTAAATGGATTGGTATTCA 349535 29 96.6 32 ............................A GCTGCGGGCCTTAAAAGAAACCGTCGGCGCGG 349596 29 100.0 33 ............................. CCTAACAGTAATGCGCCAATCGCCACGTTATAG 349658 29 100.0 32 ............................. GCCAAACCTTCTCGATATGGGTAGAGCAACTG 349719 29 100.0 32 ............................. ACCGGGCGTTTACTCACGCCAGCCAGATCAAA 349780 29 100.0 32 ............................. TAGGTCACGCCAATCATGCCGGGCAACAGGAC 349841 29 100.0 32 ............................. CCGGCAACGTTTGCCGAGCCCTGGTTCCGGCA 349902 29 100.0 32 ............................. CGCCCACTATCGATCATGCCGATATTACGGTG 349963 29 100.0 32 ............................. CTGCATGTCAGTTCGTTCGGATGAATGCCGCC 350024 29 100.0 32 ............................. CCAGATCATACAGTGAGATGGCCGGAACGCGC 350085 29 100.0 32 ............................. TCCGTTTATACAGACCACTTTCCGCAAAAGTT 350146 29 100.0 32 ............................. CCGACGCGGACAACTAGCTCATCTATTACGGT 350207 29 100.0 32 ............................. CTGCATGTCAGTTCGTTCGGATGAATGCCGCC 350268 29 100.0 32 ............................. CCAATCCAACCGTGCAAGCCGTGCCGCATTTT 350329 29 100.0 33 ............................. GGAATAAATCTACTCGTTGAGCTACCACCAGAC 350391 29 100.0 32 ............................. TTAAACATTGCTTATCCTCAAATATGTAAGTC 350452 29 100.0 32 ............................. CCCACGCCGCCATGCTGGCAATGCGTAACGAG 350513 29 100.0 32 ............................. GGGACATCGAAGGTACAGCATCTGTTGCACAG 350574 29 100.0 32 ............................. TGCAGTTAACGCTATCGGACGGTTCAACCAGT 350635 29 100.0 32 ............................. TGACCGGAAACGGCGTCATCCTGAATGCGAAA 350696 29 100.0 32 ............................. TCGCGCGTAATACTGGATCAACGGTCGAAAGC 350757 29 100.0 32 ............................. GCTGCGACCTGTTCGACATCGACGAACTGAAA 350818 29 100.0 32 ............................. GTAATTTTGATCGGCACCGTAATCGGTTTGAC 350879 29 100.0 32 ............................. ATTTGCAGGTAATAACCGTTGTTTTGCAACTC 350940 29 100.0 32 ............................. GTGACATCGAAGGTACAGCATCTGTTCCACAG 351001 29 100.0 32 ............................. TCGGCCGCGTCGATTAACTTATCGGCCGTTGC 351062 29 100.0 32 ............................. TGACAGTAACAGGGCAGTTGGCACTATTAATG 351123 29 100.0 32 ............................. AGAATCAATCACTTCATCGCTGATGTGGTTGT 351184 29 100.0 33 ............................. AATTACGCGATTGGTGGGGCGGTCAACTGGATG 351246 29 96.6 32 ............................A CCATCTAACGCCACACTAATTCTGGATGAAGG 351307 29 100.0 32 ............................. TCACGCCGATCCACTACAGCATGGAAATGAAA 351368 29 100.0 32 ............................. GCGGCGGCTTGCGTGCGGTCGGCGCTGGCGGC 351429 29 100.0 32 ............................. CTGCCATCGATCTGATTCAACCACTTGTCATA 351490 29 100.0 32 ............................. GGATGGTGCCGCGCATTCTCCCCACTCCCCTA 351551 29 100.0 32 ............................. ATTGTTGGTTGGAACCTATCGCTTTATTCAAT 351612 29 96.6 32 ............................A GTAAACGAAAATTTTAAGCCAGCTAAAATAAA 351673 29 100.0 32 ............................. TCTAACCTTTGGGTATTCGTACCGAGTTACGA 351734 29 100.0 32 ............................. TAATCGACGCATCATCCGGCTTGGTGCAAATA 351795 29 100.0 32 ............................. GCGTCGAAACGCGAAATGGCGAAATATCCAGA 351856 29 100.0 32 ............................. CTTGTTGAACAGCGCGGTTATCTTTGCGTCCA 351917 29 100.0 32 ............................. TTCGCCCAATCACCCAAGGGGTTTCAACGAAA 351978 29 100.0 32 ............................. ACGGGCCGAGCCGGGTGGTGCAATATCTCGGG 352039 29 100.0 32 ............................. TTGTCAACGCTGACCGGCAAGCCTGATTGCGA 352100 29 100.0 32 ............................. GCAGGTAAACAAGAACACAAAGAAGCGAAGAA 352161 29 100.0 32 ............................. CCGACTGGGATATTTACGCCGGATTCGGCCAA 352222 29 100.0 32 ............................. TAAGCTACAAGCAAGATGTATTCAGCCAAATA 352283 29 100.0 32 ............................. TGGAAACACAAACCAGCCAGCATTGACATATG 352344 29 100.0 32 ............................. TCAAATTTTAACCTGTAACCTCCGTCACCGTG 352405 29 100.0 32 ............................. GCATCAAGGCTGGTCTGATCATTAATACGATC 352466 29 100.0 32 ............................. CCGCTTCAATACAGACTGACCAAACATTATTT 352527 29 100.0 32 ............................. CCAAAATAGGGTTATTCCTATCTGAACGTAGA 352588 29 100.0 32 ............................. GCGTCAGGGTTTTCTGCGTGTTTTTCGCGGGC 352649 29 100.0 32 ............................. ACGGGGTATTTACGTTGGTGTCTTATCGAAAA 352710 29 100.0 32 ............................. ATCATGGTGAGAGTGTTATTCAATCGGTCAAT 352771 29 100.0 33 ............................. GATGTCAGACAAGCCTCCAAAGCCTCCGTGCGA 352833 29 96.6 32 ............................A GACGCTACTCGCCGGAAATGCAGCAAACTGCC 352894 29 100.0 32 ............................. GACTATACTCTTTTTTTAATTCGAGAGAATAA 352955 29 100.0 32 ............................. TCAAGAGAATCAGCAAGCCAACTATCACTAGT 353016 29 100.0 32 ............................. GAGAGTGGAGGTTAGTTACTGTGCGAGGAAAA 353077 29 100.0 32 ............................. ACTTTTATGCAACCGAGTCTTAACCCAGCACT 353138 29 100.0 32 ............................. TCAACATTTCGTCAAGTAGCGGCTCCACAACA 353199 29 100.0 32 ............................. CCAAGGCAGACGCAAAAACCGCTGCCACTAAA 353260 29 100.0 32 ............................. CAACGAAGAAGGACTTGAAAGCAGTAACGCCA 353321 29 100.0 32 ............................. TAACACTATGAATGCTAGAGAGTTACTAAAGA 353382 29 100.0 32 ............................. ACGGCCTGTAATCCTAAAATAAAGCACAGAAA 353443 29 100.0 32 ............................. GCAGCGTTTCGATTTCGACCGAATACGCCACG 353504 29 100.0 32 ............................. GCACTTACGATGTTGGATTGCAGACCGTTCGA 353565 29 100.0 32 ............................. TCGAAACTAATCTATCAAGATTATTATTACGA 353626 29 100.0 32 ............................. GCCATGATCTTGGCGTGGTTCTCCACGATCCG 353687 29 100.0 32 ............................. TGGATATGAGCCTTAGCCGTCGATATGGTGGG 353748 29 100.0 32 ............................. ACTTACGCCGCTGGCTAGTCACCAGCCGCAAA 353809 29 100.0 32 ............................. TCTTTGATAACTGTATTTAATGCCATTACGAC 353870 29 100.0 32 ............................. AACCAATGCGATAAACTTTATCATGCTAGGGC 353931 29 100.0 32 ............................. TATCAAAAGCTCGGCGAAGGCATGTTCGAAAC 353992 29 100.0 32 ............................. CCAACGCCGTTACCAACCGCCGGTGCAGGGCG 354053 29 100.0 32 ............................. GCCGATCAGCAAGCGGCCATCGAGTCTATCTC 354114 29 100.0 32 ............................. GCACAGGCGCGACCTATCAATCCAATAACGCC 354175 29 100.0 32 ............................. CTGGATTTTGAGGTGGAGCTGGTCGGCTCTGG 354236 29 100.0 33 ............................. GGACACGCGGCAATGCTTCGCAAGCTACGCACC 354298 29 100.0 32 ............................. ATGCCGTTTGCCTTTGAGCCCATTCGGGCTTA 354359 29 100.0 32 ............................. TCTTTCTGGCACTGAATGAGCAACTGGGCATG 354420 29 100.0 32 ............................. CAATAAAGACGATGGAATAAGCCCATGAAAAA 354481 29 100.0 32 ............................. ATTGCAGACGACCGAGCGCAAGAAACTAATGC 354542 29 100.0 32 ............................. CCGTTGGCATCATTGCTATCCCGCCGCAACCA 354603 29 100.0 32 ............................. GGGCTGGTTGAGCCTGATTTGCTAATCCTTGA 354664 29 100.0 32 ............................. CCATGGCGACGCCTAAAGCGGATAAAGCCGCT 354725 29 96.6 32 ............................C CGCTGTTTCCGGCAGGTTTCGAACAGAGATAC 354786 29 100.0 32 ............................. ACATTCGGCGCCGCCGGCGACTTTAAAAAAGC 354847 29 100.0 32 ............................. TTTTCGGTGTTGCTTTGCCGTTGCCGTCTACA 354908 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 102 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCGGTCATTCCCAACCCAGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCCAGGCTGCGTGGGCGCTTGGCGGTATGGCTAATCGAAATTCGCGCCGGCGTCTATGTCGGCGACTTGTCTGCCAAGGTGCGCGAAATGATCTGGTCGCAAGTCGAGGATGGCTTGGAAGACGGCAACGCCGTCATGGTCTGGTCCACCAATACCGAATCGGGTTTCGATTTTATGACCCTGGGTAAAAACCGCCGCCTGCCGGTCGAGCTGGACGGTTTAAAACTGGTGTCGATTTTTCCGCTGGAAGATCCGGATTTGTCTCCCTCGCTCTCAGGGCGTGGGCCGGGGTGAGGGAGGCATGCGCACTAAATTCCTGTTGGGGTATGGGGTGCTGTAAGGGGTTTTGCCAGCTCTTTAACAACTTGGAAAAGGTAAAAAATTCGGTAGAAATTTAGCCGAGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : GAAATCGATCTCGGACATAATCGCAAAATCTTGTATAGAGTACGACAGCTATTATGGTTCTGACATAGTCGAAAGACGTCACGAATATTATTGTGGCCCCATTCCCCATCCTTCCAGTTCCGATTGCCGTTTGACCTTGGGCGCATCCAGGTCGGTCATTCGGCCCTGGGTGCGGGTTAAGGTATCCTGCCGCCCATTGGAGGCTGCACTGTATTTCTGCGGATTCAACCGGCTGCCACTGCCGGTCAATTGATCGAGATTCAACATCGATGCGGCGCTGGCGTCTGTCGGTAAATGCCCGGTCTGTGCCAGAATGCCTAACCACTCATCCAGATTGACCTGAGTCCAATCGACGCGATCCAGGTCCGATACTTTGATACCGGTGCAACTGGGATTTTCAGGCGTACCAAAATCCATCCCTAATTGCGGTTTGATTTGTTCGTTGAGAATACGGGCTAATGGTGAGTTGTAGCAGCAATAACGTTCCTCGCGCTCCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //