Array 1 405187-403846 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLQ01000002.1 Bifidobacterium scaligerum strain TRE D NODE_2_length_642759_cov_48.735424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 405186 36 100.0 28 .................................... CACCCGTTCGAACTGGTAGTCGTCGAGG 405122 36 100.0 28 .................................... TCAGGCAATACCTGCTCAGCCACGTTTA 405058 36 100.0 28 .................................... GCAAATGACGACACGCTGGCACTTGCCA 404994 36 100.0 28 .................................... GCCGTCCGGCTGCTGCTGCATTCAAACC 404930 36 100.0 28 .................................... CAATGAGGCTTGCGCGGCTTTTCGCTCC 404866 36 100.0 28 .................................... CAGTGTCGCTGCCATATGGGGTGCGTAT 404802 36 100.0 28 .................................... ACCTCCATTGCACACGTGCTTATGCAGT 404738 36 100.0 29 .................................... TCGCTTGTAGATTGGTGGCGTTCGCGCAA 404673 36 100.0 28 .................................... CAATGAGGCTTGCGCGGCTTTTCGCTCC 404609 36 100.0 28 .................................... CAGTGTCGCTGCCATATGGGGTGCGTAT 404545 36 100.0 28 .................................... ACCTCCATTGCACACGTGCTTATGCAGT 404481 36 100.0 29 .................................... TCGCTTGTAGATTGGTGGCGTTCGCGCAA 404416 36 100.0 28 .................................... AGCGTCACGAATGGCAACGGGTGTCATC 404352 36 100.0 28 .................................... GAGGGGTTTGTGATGCGCGGTACGTAAA 404288 36 100.0 51 .................................... CTCGGTCATTGGTTGTTCCTTTTCGTTGCAAGCTTATCAAGNNNNNNNNNN 404201 36 100.0 28 .................................... CTCGGTCATTGGTTGTTCCTTTTCGTTG 404137 36 100.0 28 .................................... TGGACTAACACGGGTGTCATGATCGTGT 404073 36 100.0 28 .................................... GAATCTCGCCCGTGTCTGGGTATGCGAG 404009 36 100.0 28 .................................... CTCGGTCATTGGTTGTTCCTTTTCGTTG 403945 36 100.0 28 .................................... CACTTGCCAGTGGTAGCGCCACCGTCAC 403881 36 94.4 0 ...............................T.G.. | ========== ====== ====== ====== ==================================== =================================================== ================== 21 36 99.7 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAATGGTTCTGGTCTTACGATACCAAGTTCTTTGAACGACTTTGCTCAGCAGTTCGGCTTGTATTGCGAGGGCAAGATAGATCGTTTGCCAGTGCCTGAATATGTGGGTGAATCATGAAGCGTGATGAGGACAGTGGCGGTATGTGGTGCTTGGTGATGTTTGACCTGCCGGTGAAAACAAAACGGCAACGGTATGCAGCGACTGTGTTCAGAAATATGTTGCTTGATATGGGCTACGGCATGGTGCAATATTCCGTGTATGTGCGGTACACGCCTACGCAAGCAGGTAATAGGTCTACGGTCAAAATGATTAAAGACAATTTACCTGCCAACGGATTGGTAAGAATTCTGCATATTAGTGATCACCAATGGTCGACTGCAGCGCGTTTTTCTTCTGGAAAACGCGAAACAAGCGAGGAAACGCCGGATTTCCTAACGCTTTTTTGATTGTAGAAAACCAAGAAAACGTTGAAAAATAGCCCTTCTTGATAATATAT # Right flank : TTCTTCGAGCGCGGTTACGTTGTGTGCATTTATGGAAGTTAGGGTATCCGATAATGCATGCCAGTACACCAACCGCGTAACAATTTGACTGCGGTGATGGAGCGAGATACTTTTAAAGTATAGCTTTAGCCCATGCTCCTCTTCCGGTCGGAGGTCGGGGCTGATGCTTAAGCTTACCGCAACATGGAATTCTCTGCCGTGATGTTCGCAGCCGCTGCCTGCGGTGGCCACGAAGGAACACCTAGTCTTGGGAGCAGGCGAAGCAGCTGAAAGGCTGAGTCTCCCGTAGATCCGTTCGCGTCACGGGTCGCCTAGCAGAGGGCAATATAAACATGGATTCCCAACAGCGGGGCCGGAGGAAGAATCGCGTTCCTCCGGCTTACATACTTGCTTGAGGGGGAGCATTCGATGGTGGGGCGCAGGAATGATGATATTCCCGCAATGCTTGAGCGGCTGCGCCCTCTTGCTGAATGCTATGCAGATAATTTTCTTGGTCGACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //