Array 1 11477-10310 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QSQR01000015.1 Ligilactobacillus ruminis strain TF10-9AT TF10-9AT.Scaf15, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                   	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	==================================	===================================	==================
     11476	    34	 100.0	    33	..................................	GACCGCAATCCGCAACCAGTGCGGAGATGGTTA  	
     11409	    34	 100.0	    33	..................................	GGTTCGCGTTGGAATTCTTCCGTTTCCTGTTGC  	
     11342	    34	 100.0	    33	..................................	GGTTCGCGTTGGAATTCTTCCGTTTCCTGTTGC  	
     11275	    34	 100.0	    34	..................................	ACATGCTTTATGCTCCCATCCTCGTTATAGATCA 	
     11207	    34	  97.1	    32	C.................................	TATTTGTGGATAGTCAGCGTTGCAACACCATG   	
     11141	    34	  97.1	    33	C.................................	ACTCTTCTTCGTACTCTTCCCAGGCATTAGCTA  	
     11074	    34	 100.0	    32	..................................	AAAGTCCGTATGGTCACTGTTCCAGTCTTTAA   	
     11008	    34	 100.0	    33	..................................	TCAAGGGTTTTTATTATACAATAGGCAATGAAA  	
     10941	    34	 100.0	    31	..................................	CTGACCCCCATGTTACGTGCTTGTACCATGT    	
     10876	    34	 100.0	    32	..................................	GTTTACGGTCAGTCAACTTTTGGCTATCACAA   	
     10810	    34	 100.0	    32	..................................	TGGACCGTACATTACAGAAGACAGAGTTATCG   	
     10744	    34	 100.0	    33	..................................	CTTGGCGGATAGCCACTTGCTTGCGGCTGAGGT  	
     10677	    34	 100.0	    32	..................................	GGGATCCTGTCCGTTTTTGCGCAACTTGAAAG   	
     10611	    34	  97.1	    33	A.................................	CTCAACACTATTTAAAACAAGGAGGCGGTCACA  	
     10544	    34	 100.0	    35	..................................	CGTGCTGAACTTGAGTATTACACAACGGGAGCATA	
     10475	    34	 100.0	    32	..................................	GGATTCAACTGTTTAGAACTGTATTTGAACGA   	
     10409	    34	 100.0	    32	..................................	TAACAAAGGTAGATTCCCGTATATTGCATTAT   	
     10343	    34	 100.0	     0	..................................	|                                  	
==========	======	======	======	==================================	===================================	==================
        18	    34	  99.5	    33	TATTTCAACTCACGCCCCCTATACAGAGGGCGAC	                                   	       

# Left flank :   CCCTTTCAAACGACAAGACGACGCTTGAATCCTATGGGTTCATCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGGATGAGGATAATGATAGAACATAAGAAAGAGAGGTCTGGAAAGTTCCGTTCTACTTTCAAACTAAATTAATGCCGGACAAAGTCGGTCAACTTGCGGATGATTTGTTCGGTATTCTATTGATATGTACTTAATTTTTATGCTTCATACATTCTGTGACGGACACATTCAGATAACATTTATAGATTTAGTATCATCAATTTGATTTTAATCGTAAGCGGAAATAAGCGTTTAAGCCTCTGATATCTTGATATGATTTAAACATCAAGTATATCTGAGGTTTATAAAAACACTTACGTTGGTTCATATATAAACAAAAACCGGATGATGTTCATAAACTAATTTCGAATCATCCGGTTTTTTTGCTGAAAATACAGTTTTTTCCAACCTTGCTACTATTCATAACATCATTGATATGACATTCAGC
# Right flank :  TGCAAAAAACAGGCAATATAGCCCAATTTTTCGCATCATAATAAATAACTATAATCCTTGCAAGCAGAGATTAAGGAATATATTATGAATATTATTCGGTAATCATTAAAAACAAGGTGCGAATACTTCGAAAAAATATGTTCACTTTTGATTCGCAAATATTTTGTTATAAAATAAGCGTACCTTTGATATCAAAACTTTCTTTAATTCCAATGTGTTCTATCTTGTTTTTGTACTTATCACCCAAATTATAGAAACGCAAACTATCTTCATCTTTATTTATAATACCTTCTAAAGTGGCCTTAACTTGTCGATATTCTGTAGAATTTAATTGACATTCAAAAACAGAATTTTGAACCCTTTGACCGTAATTAACGCACTCTTTTGCTACCTTTCTTAGTCGTTTTCTACCAGCCGATGTTTCAGTACTGACATCATATGCTATTAAAATAAGCATAACTAACTTCACCTACTTCCAGAAAAAAGGTGGATACTCATCC

# Questionable array : NO	 Score: 3.23
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TATTTCAACTCACGCCCCCTATACAGAGGGCGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [7,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.10,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.78   Confidence: MEDIUM] 

# Array family : NA
//