Array 1 23369-25887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKCU010000009.1 Algoriphagus sp. YJ13C 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23369 37 100.0 35 ..................................... TCTCCAAGCGAAAGGTTTTTCATCCGAAGAAAACA 23441 37 100.0 38 ..................................... TCATCGGACTGGATGAGGGATTCCTCGACGTGGATAAG 23516 37 100.0 37 ..................................... TACGGATGGAAGTATCAATTCCTTAAGGGTGGAAAGG 23590 37 100.0 35 ..................................... ATTATAGAGGTAATTGCACTAGGTTTTTTACCTCA 23662 37 100.0 36 ..................................... TGGTGACAAGGGAGGCAAGCGAAGGGATGAACGATC 23735 37 100.0 35 ..................................... TGATACAGCGCAGCCTTATTGCCTGAGATCTGGTA 23807 37 100.0 36 ..................................... GAGCTGTTTAGGGTTTCAAAAAATCAAATAATATGG 23880 37 100.0 38 ..................................... TAACCTAATGAGAATGCTCCTCCTTGATTTTTGGTGCC 23955 37 100.0 36 ..................................... ATAATAGCACCAGATCCTGCTGATGGTTCTAGAACT 24028 37 100.0 37 ..................................... ACGATACCAGTCGTGAAGGATATCAGGAATTAGCAAA 24102 37 100.0 35 ..................................... CCCTGAGTATTACCTCCTGTCAGCTCGGCAAAACA 24174 37 100.0 36 ..................................... ACATTAAGGATTCTATCGGCGCGTCTGGGAATACCA 24247 37 100.0 35 ..................................... ATTATAGAGGTAATTGCACTAGGTTTTTTACCTCA 24319 37 100.0 36 ..................................... TGGTGACAAGGGAGGCAAGCGAAGGGATGAACGATC 24392 37 100.0 35 ..................................... TGATACAGCGCAGCCTTATTGCCTGAGATCTGGTA 24464 37 100.0 36 ..................................... GAGCTGTTTAGGGTTTCAAAAAATCAAATAATATGG 24537 37 100.0 36 ..................................... ACACCCCTCTCGCAAGAGCAAACCTAAAACACGCAT 24610 37 100.0 36 ..................................... TTCGAATACAAGAGGGTTACATTTTGTAGACCTTTG 24683 37 100.0 35 ..................................... GACTTATACGCACCTTTCCCTATTTACGTATCTTA 24755 37 100.0 36 ..................................... TGAAACATTTATAGGGGATGCTGAAACAAATCTAAG 24828 37 100.0 35 ..................................... TTGACCCAGTTGGATATGGTGTTCTCGGGAGTTTC 24900 37 100.0 35 ..................................... AAGCCACCCTCAAAGTAGGCCACCAAGTACTGCAT 24972 37 100.0 36 ..................................... TAGTGCCTATTACCTGACTAATAGCTTCATCAATAG 25045 37 100.0 36 ..................................... AAGGCCAATGTATTTGCAACACCTTGTGCCACCTGA 25118 37 100.0 38 ..................................... GAATATTGATGTTGATTTGCTGGAAAATCGTTGTCTTT 25193 37 97.3 36 ..................T.................. ACATTCAATTTCTTCCATGGCTTTTTCAAACCATTC 25266 37 100.0 35 ..................................... GAGAAGTAGTAGAAAACATTAGCGAAGAAACAGAA 25338 37 100.0 36 ..................................... ATCGCAGGATTGTAATGGGTAAGATTCCAGAGTCAA 25411 37 100.0 34 ..................................... TAGGTGCTACTGGGTTGGAAGCTGATATCGCCAA 25482 37 100.0 36 ..................................... CCAAACGCGCGGCAGGTCTTGCTCCAGCTGCTAAAA 25555 37 100.0 36 ..................................... TAGGTGCTACTGGGTTGGAAGCTGATATCGCCAATG 25628 37 100.0 39 ..................................... ATAGCTTTCGCCCTTATCTTTTTTGGGTTTAATGCAAAT 25704 37 100.0 36 ..................................... ATTTTAGGGCTGTCGATATCATTTTCATGGTAGATA 25777 37 100.0 37 ..................................... GGTTCCCGATCGATGTCTCCAAAGTGGGTCCGGATGA 25851 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.9 36 CCTCGAATACCGAATCCACACCAAATAGGATTGAAAC # Left flank : GCTATGCACCATTGGATTATAAGTTTGCTGAATGGAAAGAAAAGTTGTATGATACTTATCGTCAACAACTAATCTGTTACGCTGTACTGATCGAGCAAAATTATAAGAGAACAGTGAATAAAGGATATTTGATATATACCCGATCATCCAATAAACTGGTAGAGGTTCCCATTGATCAGCAGTCTAAAAGGGAGATTTTGAAAAGTATGGATTTTATGGCAGAGATAATTTCTAAAAATCAGTTCCCAAAGGGGACGAAGTTTAAGCAGCGTTGCTTAAATTGTACTTATAAAAACATCTGTATCCAGTGATCCGGAAGTGGATTTATTTGAGACCAGCAGAAAACAGTGATTAAAACACAGTAAAACAGCGTGTTATATTTACGGAAAGTTTGTAAAAATGTATAAAAATGAGTTCTTTGACATATTGAAAAATAGAAAAAAGGGAAAAATAATTAATACATATAACATTGGTAAAGAGAGGGTTGAGAAGTCAATCGC # Right flank : CAAAAAGTCCCTTGCTTCCTTGGCTCCGGCAATATAATGTCTTACTAATCTAAAAACACGAATTGAAATAAACCCTTTAAAATGAATTAACTCTTTAGTGTTTACCTTTTCTTTGGACATAAAAGAAATTTCCAAATCTGAGTATATATTGAGAGATAAGGTTAAATAGAATACTTAATCAGATAACCAATTCACTTTCTATTTTATCCCAACATTTTTAGGTACCCAAATATATATAAGCTAAATCAAGAGAAGTTAATAGAGTGAATTGAATCCACTTTTGACTCCAACGCTAGTTGTTAATTTTTCAAAGTTCAGAGGACTATAAAATTCGACTTCGGAGAAATTTTATCCCAACCACAACTCCGGAAGTGGTGGGAAAGAACGGATTGGCGTCAGACAATCCTACATCTTGCTCATTGCAAACACGCAATGCAATACCTGCCATCAGAAGCGTGTTTTGTTGTTTAAAAGGAGTATTATTTGCGATTTGAGAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGAATACCGAATCCACACCAAATAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 776067-773519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKCU010000003.1 Algoriphagus sp. YJ13C 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 776066 46 100.0 30 .............................................. TAAGCGATGTTGTCTTTTGGTAGTTGATAA 775990 46 100.0 30 .............................................. TCCGATAAACATAATAAAGACCCCCTGAAA 775914 46 100.0 30 .............................................. AACGGAGCTTTAGAAACTCCTGAAGTCAAA 775838 46 100.0 29 .............................................. ACTACATGTAATCGTAATCGAAAAAGAAG 775763 46 100.0 30 .............................................. TGCTGCCACATGTGTGACGCCGGTACCCTT 775687 46 100.0 30 .............................................. CCATTCCTCCAAGGCCTGATTTAGTTCTCT 775611 46 100.0 30 .............................................. TCATCTTCATTTGATGAAGTAAAAAAGTCA 775535 46 100.0 30 .............................................. CTCATATTTAAATTCATGTGTAATGACAAC 775459 46 100.0 30 .............................................. TTATGGAAGTTAGTGAAGTTCACATGTCTC 775383 46 100.0 30 .............................................. AGAATATCCATAACCTGGAAATTCTTCTAA 775307 46 100.0 30 .............................................. AAAAGACTTTCTCTGAAGCTAAGATTGAGA 775231 46 100.0 30 .............................................. CATCATTTAAATCGAAAATTTTTCCACAAT 775155 46 100.0 30 .............................................. CACACATTCAAAGTGGGTGCAGGTACATTA 775079 46 100.0 30 .............................................. TCAAAACGTTGGTGGGTTTTTATAGGTTTT 775003 46 100.0 29 .............................................. CCAGGACGGTCAGTTCTTGGTAGGTGTAT 774928 46 100.0 30 .............................................. TAATCTTCAGGGATTAAAAACATGGTTAAA 774852 46 100.0 30 .............................................. CCTCTGAGGTATCAATAGTCGCGCGCTCTT 774776 46 100.0 30 .............................................. CAATACGCAATCCAACTTTCATTCATTCTG 774700 46 100.0 30 .............................................. TGGCTGGGCTGCACTGAATACCCCCAAATG 774624 46 100.0 30 .............................................. TGCTGACATGATTAGTTCTTGGTTTCCAAA 774548 46 100.0 29 .............................................. GGATTTAATTTAGTTTACAAAATTAACTA 774473 46 100.0 30 .............................................. AAGCCTAATCGATTGACTTTTGCCATGAGG 774397 46 100.0 30 .............................................. TCCTGACCTGTGCAATACATGTAGAAGGTG 774321 46 100.0 30 .............................................. AAGTTTTTATTGATCCTTCCGAGGTTTTTA 774245 46 100.0 30 .............................................. GGTGTAAACGTGCAGGAACGTGTTGTTTCA 774169 46 97.8 30 ........T..................................... GATGATCGTCTGTTGCTGAATGACCTGTTC 774093 46 93.5 30 ........T...T.............T................... CCGGTAATTCCTCGAAAGGAACAATACAAG 774017 46 89.1 30 ........T....A.A......T...T................... AATGACCGATTCAAAGGGAAATACACTTCT 773941 46 91.3 30 ........TT................T.......T........... GCCCAGGAGGAGATCGTCTTCGTCGAGGGA 773865 46 91.3 29 ........T......A....A.....T................... GGGGCATGGCAAATAGGTTCAACATTTAT 773790 46 91.3 30 ......CCA...................C................. AGAAGCTTCTGATCGACTGGAATAAATACC 773714 45 93.5 30 ........T..-..............T................... TACATCATACACAAAGAAGGACCCGCTGCA 773639 46 93.5 30 ........T.....T...........T................... TGAGCAAGAGGGAGTAGAAACACCAGGAGC 773563 45 93.5 0 A.......T..-.................................. | ========== ====== ====== ====== ============================================== ============================== ================== 34 46 98.1 30 GCTGTGATCCTACTAGTAAAGTACTGATTTGAAAGCAATTCACAAC # Left flank : GAGTGCTTTGCCGGTATCAGAAGGAAAATTGTTTACCCTGACTATGGATGAGAAATTTTTCGCTAGACTTAACCAATACAGGACTTTGTGGGTACTAGTTTTTTTTGATCTGCCCACCGAGACCAAAAAGGACCGAAAGATCGCAAGTTCCTTTCGGAAGAAATTGCTGGACGATGGTTTCGCTATGTTCCAGTTTTCCATATACACTAGATTTTGCGCCAGTCGGGAAAATGCCGATGTACATATCAGACGGACGAAACTAAATTTGCCTCCAAAAGGTAAAGTGGGGATAATGTCTATTACGGATAAGCAATTTGGAATGATGGAAATTTTTTATGGAAAAAAAGTGGTGGAGCAGGAGAAACCAAGCCAGCAATTAGAACTTTTCTAAGATTAGGAAACCCTAACAATTGCTGAATTTCAGTCAGTTCAAGGAATTGTTTTTTTTATTTAAAATTATGGCATAAACAGCAGCATACCAGCCACTTAGAGTGAGGTAT # Right flank : TTCGAGAAAAACTTTGTCTAACTCTCTTTTGTCATGAAAAGTATGTGAAAGAAATCAGTGTTTAAAGACTAAACCCCAAATCACTCCTTCTCCAATATCTTTCTTATCGCCTCATTCATCTGCATCATAGTCTCCATCATTTTCATCATCACTTCAGTTTGTTTATCATTAATGATAGTGTGATTATTACTGGAATTAATAGAGACAGGGGAATTCGTTAAATGTTCAATCACATGTCCAGGTTGGGCTGAAATTAAGTGTAAAGGATCTACATTAAGATATTCAGCGACTTTTTGAATTAAGTCAACTGTAATCTTGCTTTCACCCCGTTCGTATTTGGTGTAGGTCGCTTCTTTGATTCCCAGGAATTCAGCTACTTCAAGAGCTTTTCTATCTCTGAGTTTTCTGAACATATAAAAATTTCTTCCTATCGTTTTGTTCTCCAAAACGGTGAATTCTGATTCTTCTCCTTCTCTCATGTTGTAATTATTTATACGAAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGATCCTACTAGTAAAGTACTGATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.04%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //