Array 1 580844-582253 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCE01000001.1 Limimonas halophila strain DSM 25584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 580844 28 100.0 33 ............................ CTTCCTGGCAGCGTCACTACCGCGGCTGAGCAT 580905 28 100.0 32 ............................ CGAGACGCTTCACTTCGTCGACCCGCCGTACC 580965 28 100.0 32 ............................ TGCGGAACGCCGGTCTGCGCCGACACGGCGGC 581025 28 100.0 32 ............................ TATGCGCCGTGACGCATCAGCTCGGTCCTGGC 581085 28 100.0 32 ............................ AATCGCCGTACAGCTCGTCGTAGAGCGCGCAC 581145 28 100.0 32 ............................ ACCACGTCGAAGCGATCCGCGGCCGCCACCTC 581205 28 100.0 32 ............................ TCGCCCGCGCCGTGGACCGGCCGCTGCTGGCT 581265 28 100.0 32 ............................ TTCTCCGGTGGTGACGCTGTCAACGAGAACGT 581325 28 100.0 32 ............................ CTCTCTACACAAGCTCGCAGCGAAGCGGCCAA 581385 28 100.0 32 ............................ ATTCCGCCGCCGCAAGCGGGATCACGTCGCCC 581445 28 100.0 33 ............................ TTCGGCCGCCTGATTGCGCACGCGTGCCAGCGT 581506 28 100.0 32 ............................ CACGGCGGGTCCGCGAGAACACAACGGAACCC 581566 28 100.0 32 ............................ TCCAGCGCGAGCATCGTGAACAGCCGCTCGGC 581626 28 100.0 32 ............................ TACGACAGTGCAAATAATGTCCTAGACTGTCC 581686 28 100.0 32 ............................ AGCACCCGCGCCACGTCGTCCGGGCGCATGCT 581746 28 100.0 32 ............................ CCTGGCGCGTACCCGCGATGGTTATATAGTGA 581806 28 100.0 32 ............................ TTGCTCTTGCCTGCCAGCCGGGCCGCCTCGTC 581866 28 100.0 32 ............................ TCGATCATCGCATCCACGTCGGGATTGGCCGC 581926 28 96.4 32 C........................... ATCTCGCGATGCGTCGCTGAGCGGACGACGCG 581986 28 100.0 32 ............................ TGGGAAAGGCCTCGTGCTGCTGGCGGATGATC 582046 28 100.0 32 ............................ AGCGAGCGCGTGGTGCAGGCCGGGGCAGCGCC 582106 28 100.0 32 ............................ TTTTTGCCAAGGTCCAGATCGAACCGCGTTTT 582166 28 100.0 32 ............................ TACATCGAGCGCCTCGTCGTCGCGCTGACGGA 582226 28 89.3 0 ...........A...........G...A | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.4 32 GTGAGCCGCCGCGTAGGCGGCTGAGAAG # Left flank : TACCGGCGCGAACGCCGGCACGAGGCGACGACCGACGCGGCGATCCTGCGCACGGAAGCACGCTACCAGCGCCGGGCCGAAGCGCGTGGGGAGACGCGCGACAGCATCGCCATGATCCGCAAGCGCCGGCGCGACGCCGGGGCGTTGGCCCGCGGCAAACGCCGGGAAGCGCCCCCGGTCTATCTGGCGATGCAGTCCGGCTCCACGGGGCAGCGGTTTTCGCTGTCCATCGCGCGGCGGGAGGTCACGGCGCCGGACGACGCTTCGGCTGTGCCGGACGTCTATGGCCTTGCCCGCGTGGGCGATGGGACCAATGGCGCACGTTCGCCCGTCGTCGTGCCGGAGTTCGATCCGCGCGGCCCCGGGGTTCGGTGAACCTTCGTGGCTGCGGTGCTCTTGGAAAAGTGGGGCTGATCAGGAGGATGGGCTGGGTCGGCCGGGGACGAAGGGTAACCCCGGCCGTGCGGCCCATGTCCCCGGCATGCGGGCATGATTTTGCC # Right flank : AACAGCGGGGCGTTTCAGACCATTCTTGGGATCAATGACGTGCGGTAACCCGCCGTGCAGGCGGAAGCGTTGGCGCATGTCCGGGTTGCATCGCCGCCCTGTCTCCGGTTGCCTCGACCGCATCATGGCGATGACCCGCTTGCTCCATACGGATCGGCAGAGCGCGCTCCTGCTGGAGCGGGCACACGTTCGCGTGGATGACGAGCGCGTCGTGTGCGACACAGTAGACGAAACGGTCGAGCGCACGTTCAACGTTCCCCACGCCAACCTGGCGTTCCTGCTGCTGGGGCAGGGCACCTCGCTCACCCAGCCAGCCGCGCGGCAACTCGCCGACGAGGGCGTGGTCGTGGGCTTCACGGGCACGGGCGGGGCGCCGTTGTTGATGGCGTCCTACGCGATCTACCGCCCGACCGACCGCCTGCACCGTTGGATCGCCGTTCAGCCCAGGGAAGACGCCCGCTTGGCTGCCGCGCGTGAAATCCAGGACCGGCGCGTTGCCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCGCCGCGTAGGCGGCTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 586816-587746 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNCE01000001.1 Limimonas halophila strain DSM 25584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 586816 28 100.0 32 ............................ CTCACCGGACTGTCGCCACTTCCGCAGCGTGT 586876 28 100.0 32 ............................ ACAACCCGACCATTTGAACCGGCCGCGCGAGC 586936 28 100.0 32 ............................ TTCGATGCGGCACACCGTGTCGGTCGGCACAC 586996 28 100.0 32 ............................ AACGCGCCGGCCAAGACGGCCCGGCAGCGCAA 587056 28 100.0 33 ............................ CGGGCGTCCGCGCGGTCGGCGATGCGGGTGCGC 587117 28 100.0 32 ............................ ATCCGCATCCTGCGCGAGCGCTACGGCACGGA 587177 28 100.0 32 ............................ AAGCTCGGGTGGTAACCACTATGGACGTTGGT 587237 28 100.0 32 ............................ TCCGCGCCGGATAAGCATGCCCGAGAGCCGCA 587297 28 100.0 32 ............................ TCGGCCACAAGAGCCTGAGCATGGTCCAGCGC 587357 28 100.0 34 ............................ CACGGAGAGCAGGGCGCACCGAACATCGTCCTTC 587419 28 100.0 32 ............................ CGTGTCGCTCGCCGTCGCCGGCTGGTGCGCGG 587479 28 100.0 32 ............................ GACGGAAGAGCGCTGGCACGAGCGACTATGGC 587539 28 100.0 32 ............................ CACTCCCACACGTCCCAAGATTTCCCATATCC 587599 28 100.0 32 ............................ TTCATCATCCCGATCGGCAGGTAACACACCGC 587659 28 96.4 32 .................T.......... TAGCTGGTGAGCGTCCAGGGAAACGCCACGGC 587719 28 82.1 0 ......................CG.CCC | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.7 32 GTGAGCCGCCGCGTAGGCGGCTGAGAAG # Left flank : TCGAAACCGCCTTCTTCCTCGATCTGGAACCGGGCGCGGAGCGAGCGTGGCGCGTGGTGTCGGACGACGACGCCAAAGCGCCACCGCACACGAATGTGGTCGAGGACGCCGAAACGCCATTCGCCGAGGCCGTGTGGCCGCTCCTCGATCTGGACCTGGATCGTGCCTTCTCGGCCATGCAGCGCACCTTTCCGGGGGAGGCGCGCACCACCGTCTGCCGGAAGCTGCTCGCGTTCACGGCCCCAGGCGATCTGGTCGGTCAGCGCCCGGCTTCGGCGCGGATCGAACACGAGGTTCTTTTTGGCGCGGATCGCGTTCGAGGCGCGTAGAGGTTCGTTTCTGCCACCGCCGGTGGGCTTCGGGGTTGGGATCGTGTACCTTCGTCGCGCGAGCGCTCTTGGAAAATTCGGATCGATCAGGGGGATGGGCTAGCCCCGCCGGAATCGAAAGGTTGCCCTGGCTATGCGGCCCATGTCCCCGGCATACGGGCATGATTTTGC # Right flank : CTGCTTGCCGGCGGCTCGTCCCCGGGTCGGTGCGGGGCGAACTCTAGGAGGGCGTCGGGCGCCGTTTTGACGCCCCGCGCGCGCCCGCGATCAGGTCCGCGTCGATTCCGTCGTACGCGATCGCGTTGATGGCTGCCTGGAGCTGGGGAAGCGGGATGTCTTTGACGTAGCGCCCACGCTCACCGGAGATTTCATGGCCGTTGAGCCGATTGATGGTGTCCGGATAGACCTCCGCCCTGGCAAGCGCCGTGATCGCGGTATGGCGCAGGCCGTGGAACGTGGCGCCGGCAAGATCGAGTTGGTGCGCGTAGCGGCTGAAGTCCTTGCTGACTTTGTACCCATAGCGTTGTGCTGTGCCGCCCGGCTTCAACTCCGGAAACACCCGTCTCTCGCCCTTCAGGCGTTGTTGCTCGACGTGGTCGAGAAATCCGAGGGCGAGCACCGTTTCGTGGATGGGAATGCGTCGCCAGCCGGCTGCACTCTTCACCTTCCGCGCCGGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCGCCGCGTAGGCGGCTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //