Array 1 86564-84827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLH01000045.1 Escherichia coli 1-182-04_S4_C3 e118204S4C3.contig.44_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86563 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 86502 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 86441 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 86380 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 86319 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 86258 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 86197 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 86136 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 86075 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 86014 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 85953 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 85892 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 85831 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 85770 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 85709 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 85648 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 85587 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 85526 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 85465 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 85404 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 85343 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 85282 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 85221 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 85160 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 85099 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 85038 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 84977 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 84916 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 84855 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113512-112263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLH01000045.1 Escherichia coli 1-182-04_S4_C3 e118204S4C3.contig.44_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113511 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 113450 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 113389 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 113328 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 113267 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 113206 29 96.6 32 ...........A................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 113145 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 113084 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 113023 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 112962 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 112901 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 112840 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 112779 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 112718 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 112657 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 112596 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 112535 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 112474 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 112413 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 112352 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 112291 29 86.2 0 .A.CC.......................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //