Array 1 3988019-3985668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026235.1 Citrobacter freundii complex sp. CFNIH3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3988018 29 96.6 32 ............................T TTCATTCCATCCTCCGATATTAACCACGTGCG 3987957 29 100.0 32 ............................. GCTTTCACCTAAATTTGCTGTTCAGGTTTCAA 3987896 29 100.0 32 ............................. CGGGCAATTTGCGTTTCAGGGAACTGGCTCTT 3987835 29 100.0 32 ............................. TCTGCTCTCTCCATCGCCGTCATTGAGGCGAC 3987774 29 100.0 32 ............................. ACAGAGGGAGGCCGCTGTCGGGTGCGGTTCGT 3987713 29 100.0 32 ............................. CTGGCCAATCTGGAAAAATTGCGCGATGCCGT 3987652 29 100.0 32 ............................. CTGAGGTCTGCGCTCGCTGATGAGGTGGAAGA 3987591 29 100.0 32 ............................. ATATTCAGAAACTCGGTGAGCGTCTTGGTTTG 3987530 29 100.0 32 ............................. CCTGTCATTCGTTTTGATGGAAATATGCTTCA 3987469 29 100.0 32 ............................. CAAACCGACGAAAAAATCACGCATACCGTCAT 3987408 29 100.0 32 ............................. TGCATCTGGAAGCTGGCAAAGTAGTTACAAAG 3987347 29 100.0 32 ............................. ACGAGCATACGGAGGTGGTTTGGGTACATGAA 3987286 29 100.0 32 ............................. GCGTAACCCCAGCTTCTCTAGCATCTGCTGAG 3987225 29 100.0 33 ............................. ACCGCTGGCACTGGCTGGAGGCTCGCCATTGGG 3987163 29 100.0 32 ............................. CCATCAACCCTGATTTCAATACGCACGACGAT 3987102 29 100.0 32 ............................. TAAAGTACCAATAGTACATATTTAAGATAAAA 3987041 29 100.0 32 ............................. ATTACCAAAGGCAGCCTGAACGGGTTTCGCGT 3986980 29 100.0 32 ............................. AAACCAGACCCGGCGTTGGATAAGCCTCTGCC 3986919 29 100.0 32 ............................. ACAGCCAGATCAGTGGCGTCTTTATGATCTCG 3986858 29 100.0 32 ............................. CGAACAATTTGAACATAACGAGAACCCCGCCA 3986797 29 100.0 32 ............................. GCGGCGCAGCGGCTGCGGCCATCACGCCACGC 3986736 29 100.0 32 ............................. CCGGGTAAAACCATAGGAAAAATCGGGTATGC 3986675 29 100.0 32 ............................. TTTCGTGGAATTGAGATATAGCGACTGACCGA 3986614 29 100.0 32 ............................. AACGAGGGGGCAATTGAGCCGGACGTTGACGG 3986553 29 100.0 32 ............................. ATATTGAGGACTCGATATCGATTGCGATGATG 3986492 29 100.0 32 ............................. TTGCCCGACCAGGCTTTCACTGACGTGCTCAA 3986431 29 100.0 32 ............................. GCATACGGCAGGATTTACGAAATTACTATCAA 3986370 29 100.0 33 ............................. GGTATTCTTTGTCTGAGTAACTGCCTTTTCTAA 3986308 29 100.0 32 ............................. GCGATACACACAGCCGCCGATCTTTCCGTTTC 3986247 29 100.0 32 ............................. ATCCTAAACAACAGCTCGCCTATTTGGCCGTA 3986186 29 100.0 32 ............................. ATATCGCCGCAGCACTCACGCAGTTTGCCACC 3986125 29 100.0 32 ............................. CAGGGATAGTCAGCAGCGTTCGCGGTCCCGGC 3986064 29 100.0 32 ............................. GTTTGAATAGTGCATTCATTATTTGCGGGAAC 3986003 29 100.0 32 ............................. AGCGGGGTCGGAGTTACTTTTTGTTTTCGCGT 3985942 29 100.0 34 ............................. ATCGAATATAGACAGTAAGCTAAATTATGCAAGT 3985879 29 100.0 32 ............................. GTGCGCGGCCCCATTTAGCAGGGCGTTTTGCG 3985818 29 100.0 32 ............................. CGCATAGCCGAGCTGGAGGCGCGGACGGTGAA 3985757 29 100.0 32 ............................. TCTCTGGCCGCGTTTAAATACTCAGTCGAGAA 3985696 29 93.1 0 .........................T..A | ========== ====== ====== ====== ============================= ================================== ================== 39 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCTGGCGAAATAGACCCTCCGCAGCCTGCGCCAGATATGCTGCCGCCTGCAATACCGGAACCGGAATTGTTTGGAGATGGTGGTCATAGGGGGCGTGGTGGATGAGTATGGTTGTCGTTGTAACGGAAAACGTTCCGCCGCGTCTGCGAGGGCGTCTCGCCGTCTGGCTGCTGGAAATTCGTGCGGGTGTTTACGTTGGTGATACCTCTAAGCGAATTCGGGAAATGATTTGGCACCAAATCATACAGTTGGGCGGAGCGGGAAACGTTGTGATGGCCTGGGCGACAAACACGGAGTCAGGTTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATTCCGGTAGATTTGGATGGACTTAGACTAGTGTCTTTTCTTCCTTTTGATAATCAATAGGTTGAGTGTTCTTTAATAAAACGGAATTGTTGTTCCCAAGTTGGTAGATTGTTACTTGATGAAAATTGCAATAGAAAACAGTTATATATATTTAGT # Right flank : CTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCTTTTGCCAGTTCTTTTACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCTGCGTTGTCGAAGACCTCTGCGTCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGTGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //