Array 1 1428031-1431217 **** Predicted by CRISPRDetect 2.4 *** >NC_014150.1 Brachyspira murdochii DSM 12563, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1428031 30 100.0 37 .............................. ACAAAATGCAGGTGTTACTGGCACTAGAGAAACACTA 1428098 30 100.0 37 .............................. AGTATCTACAGTTTTACATTCACAATGCATATTTTCT 1428165 30 100.0 37 .............................. ATGCAAAACAATCTAATATTATATCATTCTCATTTGA 1428232 30 100.0 37 .............................. ATTTTTTGACTTAAATTGTACCAATTTAAATTAACTT 1428299 30 100.0 37 .............................. ATTTTTGGAGTTTGACAGCTATAACAAAAAAGTGATT 1428366 30 100.0 37 .............................. ATTATGAAAAGCGGGCTCAGTCAAATATAAACAATTT 1428433 30 100.0 38 .............................. ATTTATACTTACTAATTCCCAAGTTTCTTTTTTTATAT 1428501 30 100.0 37 .............................. ATTAACATTCTTAAAATATCTTTCAAGTTTCTTTACT 1428568 30 100.0 37 .............................. ATAAGCTAGCTATAAAACAACCGAGTTCTAATTCACT 1428635 30 100.0 38 .............................. ACTCTATTAATTAAAGCATTATTTAATAATTTATTTTT 1428703 30 100.0 37 .............................. ATCCTCTGAAGTAGAATATATTACATCATATTTAATT 1428770 30 100.0 38 .............................. AGTTGTTTTTGTTGTAATTCTAATGCTTTTTGCTGTTT 1428838 30 100.0 37 .............................. AATGTATAATACTGTCAAAGTTAATATTATACAGCGT 1428905 30 100.0 38 .............................. AGCATTTTTGCGGGCTTTTCTATTGACAAATAATTTAT 1428973 30 100.0 37 .............................. ATTTGACAATATATAAAAACTTTCATGTCGTCTAGGT 1429040 30 100.0 37 .............................. AAGCTATCATTGATGCACAAAATGAATTGAATGAGTA 1429107 30 100.0 37 .............................. AGTTTTGTATAAAAATAGAGAACTTGATACAGTCGGT 1429174 30 100.0 37 .............................. AAAAAACATTTAATGAGTTTATAGACTTTATAGAACA 1429241 30 100.0 37 .............................. ATATGCAAAACCCGATATCTTAATTATAAATATTAGT 1429308 30 100.0 37 .............................. AGACAGTCTCAATTAATTTAGTCATCTTAGTAATACT 1429375 30 100.0 38 .............................. ATAAGTATGATCCATAAGACCGGGATCGGAAATAGTAG 1429443 30 100.0 37 .............................. ACAAATGGTAAAGTAGTAAATCAAGTAACTAGCTTAA 1429510 30 100.0 37 .............................. ATACAAAAAATATCGTAAATATAATGTTAGTATAGGT 1429577 30 100.0 37 .............................. ATAGCATAAAAAGATATTACACGCCTCAAGAGTTAGC 1429644 30 100.0 37 .............................. ACGAAATTACTTTCAACTCCAACGTCTTGATACTCAA 1429711 30 100.0 36 .............................. ACACTTTGAAAATAAAAAACTTGTAATATTAGATAG 1429777 30 100.0 37 .............................. AGAAAATCTGTTCGGCGGTGTTTGGGAAGTACAATAT 1429844 30 100.0 36 .............................. ATTCTTTTTTACTGCGACCTAACCAGTCATAAAACG 1429910 30 100.0 38 .............................. AGCATACAACTTATTTTTACTAAAAATATTTATTCTTA 1429978 30 100.0 38 .............................. AACAAGCAACTGCAAACTGGTATAACACTAATCAACAT 1430046 30 100.0 37 .............................. TGTAATATCCATAACCTCATCACCTACTATCTCACTT 1430113 30 100.0 37 .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430180 30 100.0 36 .............................. TTATCATAAAAGGCAAATATGTAAGTACAACTGCAA 1430246 30 100.0 38 .............................. TCTGTTTGATGATACATCAGGAACACCGCCACCATAAG 1430314 30 100.0 37 .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430381 30 100.0 37 .............................. TGTAATATCCATAACCTCATCACCTACTATCTCACTT 1430448 30 100.0 37 .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430515 30 100.0 38 .............................. TGAGTTTTTTTATACTGGGAATGATGTTGATAGTTTTA 1430583 30 100.0 36 .............................. TTATCATAAAAGGCAAATATGTAAGTACAACTGCAA 1430649 30 100.0 38 .............................. TCTGTTTGATGATACATCAGGAACACCGCCACCATAAG 1430717 30 100.0 37 .............................. TATATAGTTCCTATCATTCTTTATAGCTCCAAGAAGT 1430784 30 100.0 37 .............................. TATTTCCCATTTCGATAATATTTTATTAAACTTATTT 1430851 30 100.0 36 .............................. TAGCTATCATTGATGCACAAAATGAATTGAATGAGT 1430917 30 100.0 38 .............................. TAATAAACAAACAACATCATTATTAATTATGCCAACTT 1430985 30 100.0 37 .............................. TCAAGAGGAACATATCCTATAGTGTTGTTATTTTTTA 1431052 30 100.0 38 .............................. TTTATTTGAGTATGAGACTGTAATAACTGATAGTAATA 1431120 30 100.0 38 .............................. TGCGTTTGCTACAGGTACGGCTGGTTATACTTTAGAAG 1431188 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ====================================== ================== 48 30 99.9 37 ATTTCTAATCTAACCATACTGGAATGTAAA # Left flank : CTAAACATTTGCTTAATGAAAAAGAATATAAACCTTTTGTAATATGGTGGTAAGCAATAATGTATTTAATATTAGTTTATGATATACAAACAGATGACGAAGATGGTGCTAGAGCTGCAAGAACAGTTTTTAAGACTTGCAAGGCATATCTTAATCATATACAAAAATCTGTCTTTGAGGGTGAACTCTCAAAAGTACAGTATTTGGAATTAAAAAATAAGCTCTTTGACATTTTAAGAAAAGAAAAAGATTCTTGTATAGTTTTTAAAAGCCGTAATGAAAAATGGCTTGATAAAGAGTTTTTAGTAGAAGAAAGCATTGACAAAACATCTAATTTTATATAAAATAAGTTTATTGTCGAAGTGTAATTGTTATAAAATTGTGCTTAATCGACAGAAGATTTTTGCCAAAAATATATTTATTAACTGTTTTTTCATTATGTATTTGTGCATTTAAGCAAATTAAATATGTAAATTAGAAAAATAGTTTTGGATATACGG # Right flank : TTTTATATTTAACATGCTTGACTAGCATCATAAATATTATAAAATATTTATAATTAATAAATAAATAATATATACTGCTCTTAAAAATCACATTAATTTTTTATATTGACATAATAAAATAAATATATTATAATACAGCCGTAATTATAATTTATGGTATAGAAATGAGCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCCGTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATGATACTATTACTCTAACATCATTTTTAAAAAAATACAATAAGGGGTCTGTAAATGATGATAAATTACAACAAAATTAATTTTAAAAAATCATCAACATTATTTATATCTGGACAATATCCAGATGGAAAATTTTACATCATAAACAAAGGTAAAGTAATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAATCTAACCATACTGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //