Array 1 303481-300343 **** Predicted by CRISPRDetect 2.4 *** >NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 303480 36 100.0 30 .................................... GGACCAGTCGGGGCGCGGTCCGTGCCACCA 303414 36 100.0 30 .................................... TCACCCACGACAAGCAGCCCGACACCCCCG 303348 36 100.0 30 .................................... TCGTGAAGCCGGTTTCCTTCACGTACTCGA 303282 36 100.0 30 .................................... ATGCTGTCTGTCGCATTGCCGCATGCGTGC 303216 36 100.0 30 .................................... GGCAATGCGCCCGATGCGGCCAGCACCAGG 303150 36 100.0 29 .................................... CGAAGCGCCCGGGGTCGGCCGCCGCCCGG 303085 36 100.0 30 .................................... TCGGGCGCGCTACACCGGCAGGGCGTGACG 303019 36 97.2 30 ................C................... CAACTTCCTGCAGCTCGGCCTACGGCCTTT 302953 36 100.0 30 .................................... ACCCCGCCGTGGGCGTATCCGATCTGCCGG 302887 36 100.0 30 .................................... CGGCGCGGTCCGCGGCCTGCACGCTGGTGA 302821 36 100.0 29 .................................... GCGGCTTCGGATCGACAGGCGCAAATTAG 302756 36 100.0 30 .................................... ACGCGGCGCAACAGGAGTATGAGAAATGCA 302690 36 100.0 30 .................................... AGCATGTTGATGCCCTTGGAACAGGTCGCA 302624 36 100.0 30 .................................... AAGAAACTTGCGTCTGTGGCAACCGTTTCG 302558 36 100.0 30 .................................... TGTCAATAAACCAATAGCCGCATCCCTCTT 302492 36 100.0 30 .................................... CCGATGATCAGCGACGAGCATGCGCGCAAT 302426 36 100.0 30 .................................... AGCGCCGATCAGTGCGGCGATTGCCAGGGT 302360 36 100.0 30 .................................... TTTCGCGGTACTGCATCGCCGTGGCGCGGG 302294 36 100.0 30 .................................... AGCGCAGGCCGCCACAGCCAGAACCATGCT 302228 36 100.0 30 .................................... TCAGGTCTTGGCCGATGGCCTGCCCGACCT 302162 36 100.0 30 .................................... CTCGGCGGTGGCAACGAAGCTGGCGATTGC 302096 36 100.0 30 .................................... CGCAGCACACGCACTCCAATTGGCACTGCA 302030 36 100.0 31 .................................... GTCGGGCGTGCTGCAAAACGTGCATCCCGAC 301963 36 100.0 30 .................................... GCGCAAATTACGCAAGTCTCTATGCGGGGC 301897 36 100.0 30 .................................... CGCGCCATGCCTTGGAAAAATAGTGATCCT 301831 36 100.0 30 .................................... GGCTCAGGTCATAGACCTGACGACACTGCA 301765 36 100.0 30 .................................... CATGAGAGTTAAGGAATGGTTGCTGAGCCA 301699 36 100.0 30 .................................... GCCCGGCTTGTGATCCCCTTCTACGATGAG 301633 36 100.0 30 .................................... GTGATGCATCGTTTGACCGCCGACGCTGGA 301567 36 100.0 30 .................................... GAGGTGTACCGGCGGGTGGCGGCCACGGGC 301501 36 100.0 30 .................................... TTCGCAGACCATTCAGGAAGTTTTCGGGAA 301435 36 100.0 30 .................................... CAAGCAGACGCTGGAGACGATCACCGCCAT 301369 36 100.0 30 .................................... TGGATTTGCATCGGACATGCAGACCAGCAG 301303 36 100.0 30 .................................... CAGATCCGCCCGCGTGACCACCCGGCCACA 301237 36 100.0 30 .................................... GCAAAAGAACTGAACTATGTCACCAGTCTT 301171 36 100.0 30 .................................... TGGTCGGCGCGACAAGGCGTGGCGGTCGGC 301105 36 100.0 30 .................................... CGGTACTCGCGGCGTTGAAACCCAGTTCGT 301039 36 100.0 30 .................................... GCCGGTGGTGTACGCCTCCGCCGCGCGAGT 300973 36 100.0 30 .................................... GCGATCGGCGCCTGGGTGCTGGACCAGGCC 300907 36 100.0 30 .................................... CGCAGGAACCGCATCCGCCGGTACCGACGA 300841 36 100.0 31 .................................... GCGCGCTGTGGTTGATCGTGTGGTCAATCCT 300774 36 100.0 30 .................................... GCCCACTGCCAAGGCTTTTGCAGCCATTTC 300708 36 100.0 30 .................................... AATCGCCGATGGATGCACGCGAGCATCCGA 300642 36 100.0 30 .................................... CGCGCCGTTACGCTCGATAGACCACCGGCA 300576 36 100.0 30 .................................... CCAGCGACATGACAGCCACGGTGACCTTGG 300510 36 100.0 30 .................................... ACATGTTGGAGCATGGTCCACTTTGCCAGC 300444 36 100.0 30 .................................... ACCTGCTGGCGGAAATCGCGTGCTGCCTCA 300378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.9 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : CGCGGGCTACGACGGCTACAAACGCAAGCGCGGCAGCAAAGTGCATATGGCCGTGGACACGCTGGGTCATCTGCTGGCGGTGCATGTCACGCCGGCAGACGAACAGGAGCGTGCGCAGGTGCAGCGCCTGTGCGAAGACGTACAGCAGGCTACGGGCCACACGGTACAACTGGCTTGGGCCGACCAGGGCTACACGGGTGAAGCGGCATCCAAGGCGGCGCAGGACAGCGGAATTGACCTGCAGATCGTGAAGCTGCCCGAGGCGAAGAAGGGCTTTGTGCTGCTGCCGCGCCGCTGGGTGGTGGAGAGAAGCTTCGGCTGGCTGGCAAGGTTTCGCAGGCTCTCCCGGGACTACGAGCGGCTACCCGAAGTGCTCGGCGGGATGCATTTCCTGGTGTTTGCGGTGCTCATGTTGCCCGCCGCCGCGCGGGTGCTGGCTGCGGCGGGAAGTTCATAACACGCTCTAGACTCTGTATCTTGCCGGCATCCAATGCGTATCC # Right flank : CTGATCGCGATAACCCCTTGATTCGTCAAGGGGTTTTTCGCTTCTGCGGTCCAGGAAAACATGGCGTCTGGCTAGAAAAGATCGAACTGATCGGGTGCTTTTTGCGCAGGCTGGCGGCTGCGCCCGTGGAAGGAGATGGCGCGCTCGTATTGCTTGTCGGTGAACTGGAAGATATGCACTTTGCCGCCCGCCGGCAAGGCCTGCTCCACTTGGCGGCAGAGCGTGTCCACCTGGGCCTGGCTGGTGCAAAAGCGAAGGTAGACGCTGAACTGGCTCATCTGGAAGCCCACGTCCAGCAAGGCATTGCGAAAGCCCGTGGCGGCTTTACGCTCGGCCTTGGTGATCACTGGCAAGTCGAACATCACCACCATCCACATGAGTCGGTACCCCGTCAGCATGGTTGCAATCCTGTCTGTCCGTCGGCATGCATTCAATCGGGATCGAAGCTGCCTGCGAGCGACAGAGGCAGTCCGGGCAGAGGCAGGTCGAGCCGGAGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 306223-305395 **** Predicted by CRISPRDetect 2.4 *** >NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 306222 36 75.0 30 AACA.A.....C.....C.....G.....T...... GCACGAGCCTCCGGCCCTTGCGCTGGTACA 306156 36 100.0 30 .................................... CGACTTCTTTACTGCCTGAGAAACCATAGA 306090 36 97.2 30 .............T...................... TCACCCCTCCGAGCACTTGCCAGTAACCTC 306024 36 100.0 30 .................................... CTCGCTGCTCCTCTGGGCTGTAAAACCGCT 305958 36 100.0 30 .................................... CGATGGCGTGGGCAATGGCGGCAGCGGCGC 305892 36 100.0 30 .................................... GCGCTGTCATTGAGTCCCCGCGCACGCGAA 305826 36 100.0 30 .................................... CTCGCTGCTCCTCTGGGCTGTAAAACCGCT 305760 36 100.0 30 .................................... ACCATTCGCCCGCCTGCACTGAGGAAATAA 305694 36 100.0 30 .................................... GACCCCAGCGCTGCCCCTTCGCGAGCTTCG 305628 36 100.0 30 .................................... CTGGCTACGAAAACGATGCGATTGAAACCG 305562 36 100.0 29 .................................... TTTGTATGACAGAAAAACTTTTTGTATGA 305497 36 100.0 31 .................................... AACGTACCACTTTGCCTAGATACTCGCCGTC 305430 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 97.9 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : TGGCGAGCGCGCGCCGGATGGCGGGCGGAAACGCGGACAGCGTGGCGGCGGCCGCTCCGGTGCCGAGCACGCCGGAGAGGAACTTGCGTTTGGAGGAATCGACGGTCATGTTGGAGGAGTGTTTGTTGTCCGAAGAAAGGCGCGGCAAGCGCACAGCATGCGCGCGGCGGTGCGGCGAGCGCGGGGCAGGAGGGGTGCCCCAGCGCCCGCGGGCCCGGCTCAGGGCTTGGGCGCGCAGTGCGTGTCGGGGTTGCCGCAGTGGGCGACGAAGCTGTTCGCGGAATCGGAGCCGGAGCCGCCGCAGCCGGCCAGCAGCAGGCCGAACGCGAGCGTGCAGGCGGCCAGCAGGGAGCGGCCGAGGAAGGACGGCACGGTGGGCCGTGGATGCGAGGTCATGGCGTGGGGGGAGGAATGGAGAGGGTTGGCATTCTTCTCGCCGACTATTGCGCGGGAGTGACGTTTGGGTAACACGGCGGTTACGGGCCAGAGCAGTACCGGTG # Right flank : GCGCTGTCATTGAGAGCGGCTAACACGACCTGTTCATAGCCCAGCGCGAAGCAGCTATGCTTGGCGCCCTCATGGCAAGAAGACCCGTCAGCAAAGAACTGTGGCGACAGCTGCAGCCGCTCATCCCGGCCTTCGTGCCCTCGGCCAAAGGCGGGGCGCGCAAGCGCACCGTCAGCGATGAAGCCGCACTCAATGGCATCCTATTCGTGCTGCACACCGGCATCGCCTGGGAGGACCTGCCGCAGGAACTCGGTTTTGGCAGTGGCATGACGTGCTGGCGGCGGCTGCGCGACTGGAACGCTGCCGGGGTGTGGGAGAAGCTGCACCACGCCATGCTGGTGCGCCTGCGCGAGCACGACCAGATCGATTGGAGCCGGGCAAGCATCGATGGCTCGTCGGTACCAAGCCCCCGGGGGGCCAGGAAACAGGGCCCAACCCCACGGACAGAGGCAAACTCGGCTCCAAGCGGCACATCGTCGTAGACGCGCGGGGCATTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 1786615-1785060 **** Predicted by CRISPRDetect 2.4 *** >NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================= ================== 1786614 32 100.0 36 ................................ ACCAGCTCCTGGTAGTCGATGGTGTGAACACCATCC 1786546 32 100.0 34 ................................ CCGCGACGGCCTGGCCCTGTTCGACGAGGTGCGC 1786480 32 100.0 33 ................................ GGCTGCGCCCTTCTGCGCGGCCTCTTGGGTCGC 1786415 32 100.0 34 ................................ GCTTTGGCTGCCTGCCACGAGTAGCCGGCCTGCT 1786349 32 100.0 34 ................................ TACCCTGGGTGACACTAGCAGCCGCGCGAACCTG 1786283 32 100.0 34 ................................ ACGCGCGTCATCGGCGGCGTGGACCAGCTGGCCG 1786217 32 100.0 36 ................................ CTCGCCAACGCCGTGCCGAGCGTGGCCGAGGAAGCC 1786149 32 100.0 36 ................................ TTCGGTGAGCGGCGCATGCCAACGCAGTCCGTGCAG 1786081 32 100.0 36 ................................ CCTGACTTGGGGGTATGGGGCATTGCCCCATGTTGG 1786013 32 100.0 35 ................................ ACCGTGAGCGCAAGCGTGCGGTTGATCGGCGGGAG 1785946 32 100.0 35 ................................ GTAAATGTTGGTTTGTTTGCCCACCTCTTTGGTGC 1785879 32 100.0 34 ................................ CACTCCGGGTGACTGCTCAGCGAGGTCCATGGGA 1785813 32 100.0 35 ................................ CGCCCGGCCGTTGCCGCGCAGCAGCATGGATGCCA 1785746 32 100.0 35 ................................ GGGGCGCTGGTGGATGGCATCCGGGCCGAGGCCGA 1785679 32 100.0 35 ................................ TCCATTGCGCAGGTTGCCTTTGCGGTGGCCCTGAC 1785612 32 100.0 35 ................................ CCGTACCGAAGCTCAGCACGGACCCACGGCGAGTC 1785545 32 100.0 34 ................................ GCCCCTGTTTTAGCTGTGGCAGCACATGGTAAGC 1785479 32 100.0 35 ................................ TGCGCTCCGGGCTCCCACGCCAGTCGCTGCTGAGG 1785412 32 93.8 34 ......G.T....................... TTGAACTTGGCGAGGTTGTTCTCGTGGCTCTGGT 1785346 32 93.8 36 .........C..........C........... GAGATCGAGCTGCGGGAAACGGATCTGTCGCTCAAG 1785278 32 87.5 89 .........CA.............A.A..... GGCGTGTCGCTGGAATCCTGCGAGAGGACTGCGTGTTGGTGCTTGGGTTAAAACTGCTCCAAACGTGGATCAGTGACGCGCTTTGCGAC 1785157 31 81.2 34 .......A.A...A.....G......-..G.. TACCCCCTTACAAGGCGTAGGTCGGCAGTTCAAC G [1785141] 1785091 32 84.4 0 ............AT.......C.TA....... | ========== ====== ====== ====== ================================ ========================================================================================= ================== 23 32 97.4 37 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : GACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATTTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGTGACTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCGCCATTCCTCTCTTCCTTCCTTCTTTTGGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGGTCGGTTGGGCGGGGTTCGCGGATGCGTGGGAGAAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : GACGAGAGGCGTCGCGGCAAGATGTCCGTTATCGGTCCAAGCGCAGTGCGTGCGTGAATGCGGCCAACCGCCCGACCTGCCCCGCCCCACGCATTTTCGGGCGCTCTCACATCGCAGGCTCGCGCATCCCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGCCTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGACGAGACCGGGCGGAACCCCAGCCTCGCATAGGCCGGCGCGCTCCACGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCGACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCAGGATAAGCCTCGTGCCGATGCCCCTGCGCTGCCATTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTCCGAAGGCCTCGGCGTCCAGAAAGCCGACCAGGTGGCCGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 4426774-4430214 **** Predicted by CRISPRDetect 2.4 *** >NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4426774 32 100.0 35 ................................ GAGCAGTGTTTGTCGCTTGCCAAATCGGCCCTTGA 4426841 32 100.0 34 ................................ CTCACCAGTTGCCCGAGCTGGCGGGCCATGCGGC 4426907 32 100.0 35 ................................ GATACGCTCTTGATCGCCAGCGAAATGCAGTAGCC 4426974 32 100.0 35 ................................ GCCCAGTGGCGCAGGCGTCCCCATCCTCGGCAAGG 4427041 32 100.0 35 ................................ GCCCAGTGGCGCAGGCGTCCCCATCCTCGGCAAGG 4427108 32 100.0 34 ................................ GCGCCGAACCTGCCGCAGTTCGAAAAGACGTGCG 4427174 32 100.0 35 ................................ CGTGGCGATGTCCATATGCCCGTCGCCGCCTCCCA 4427241 32 100.0 34 ................................ CTGCGCGCTGTGATGAACGACAGCGGCACCGAGG 4427307 32 100.0 36 ................................ CGTGGTGGTGCCGTGCGCAGAGCTGGCGCCGGCCGT 4427375 32 100.0 35 ................................ CACCAGCTTCCGGTACTGCGCCCGCGCGTCGGTAG 4427442 32 100.0 35 ................................ TTGCTGATTCCGTCCGCATCCAACCCGGCGAAGCT 4427509 32 100.0 34 ................................ TGGAGATCGTCCACGCGTCCCTTGATCTCGCGCA 4427575 32 100.0 34 ................................ ATTCCGTCGTTGAGCTTGAGCACGCCGGCCAGCG 4427641 32 100.0 34 ................................ AATCCACTGAAAGCAACCCATGACCTTTGAAATC 4427707 32 100.0 34 ................................ CCAGACCCGCGCAGTGACCCATCCGTCTTCGCTG 4427773 32 100.0 36 ................................ GACGTGGCGCAGCCGCGCCCAGTGGAGGGAGCGCAG 4427841 32 100.0 36 ................................ GGCAGGAGGTGGCGGCGCTGCGCGCTGCCGGGGAGG 4427909 32 100.0 36 ................................ GCTTCGATCTTGGCCAGAAGCTGCTGCGCCTGCTGG 4427977 32 100.0 35 ................................ GCGCCTTCATTGACCTGGACAACCCCGACCTGCCC 4428044 32 100.0 36 ................................ CGTCACGGTGCCGCACCGCCCAGGCCCGTGCGGCCC 4428112 32 100.0 36 ................................ GATGCCGTGTACCTCATGGCGCTGAATCCGGAGGCC 4428180 32 100.0 34 ................................ CATTCCACGATGGGCCGAAACTGCCAGTACCCGG 4428246 32 100.0 35 ................................ TTGGTCTGCCGGCCGCCGTCCTCGCGCCCCACCAG 4428313 32 100.0 34 ................................ ACCATTGGCGCGTCATGGGCCGGTGCTGCAAAAG 4428379 32 100.0 33 ................................ TGGTCATCACCATCACCGCCGCCCTGGGCCTGC 4428444 32 100.0 34 ................................ TCCTTATACGAGGCGGTTAATCTTCGGAATGCGA 4428510 32 100.0 34 ................................ ATCCACGACCACCAGCCCAGCGCCCCAGGCGTGT 4428576 32 100.0 35 ................................ ACCTGATCGCGAGTGGGCGCTGCGAAGAAATACCG 4428643 32 100.0 33 ................................ CAGATCCGTGCGGTGATCCATCCGTCCTCACTG 4428708 32 96.9 34 .......T........................ TTCCTGGAGCGCTTCCTGCGCGAGGAAAAGCTGC 4428774 32 100.0 34 ................................ GTTCTCCTCGGCCCCGCGGGCCATGGTTTGCTCT 4428840 32 100.0 33 ................................ CTCCACAAGGGGGGAACGTGTAGAGACTCGACG 4428905 32 100.0 35 ................................ CCGTTGACGACGAGCGAGTACCGGACCTGGCGGTA 4428972 32 100.0 34 ................................ ATTTTTGCACCTTGAATTGCCGGGGTACGCCGGC 4429038 32 100.0 36 ................................ CCGATGGGATCCGCCTGCAACCCAAGCGCCATGACC 4429106 32 100.0 35 ................................ CGTACCTAAAGGTACGGAGCCTGGCAACCCCCCGC CGCGTGGG [4429131] 4429181 32 100.0 36 ................................ ATCGCCAGGATGGCGGCCACCACTGCCGGCATGCTG 4429249 32 100.0 36 ................................ ATGGTGTGGGGCTGGTCGCTGATGCAGTCCCAAGGG 4429317 32 100.0 35 ................................ AATTCCGAGGCCTATGCCTACGGGTCGAGCATGCC 4429384 32 100.0 35 ................................ GCCCCCGACATCGGCCCCGCGCACAAGGACGACTA 4429451 32 100.0 35 ................................ CCCAGCCACTGCCAGCAACCTGAAACGGCCGCCGC 4429518 32 100.0 35 ................................ CGTGACATCGGGCTGCGACGCAGCCGCGAAAGCCG 4429585 32 100.0 34 ................................ GCTTCGGCCGTCAAGCGCGTCACCTCGATCTGGA 4429651 32 100.0 34 ................................ CAGCTCGAAGGTTTGGAAGCGCCCGTAGCGAAGG 4429717 32 100.0 35 ................................ CGCCGTGCGGACGGGAAGCCCTGGGGCTTGGCTGG 4429784 32 100.0 35 ................................ TCGGCCATGATGGACGCGATCGCTCTCGGCGGTGT 4429851 32 100.0 34 ................................ AACTACTGGCGCACGGCCTCTACCGAGCTAGTAG 4429917 32 100.0 34 ................................ CTCGCTTGGCGCCGGTGGCTTGCTCGATGGCCTC 4429983 32 100.0 35 ................................ GACATCGAGGCCAAGGTCGGCGACAAGGCCAAGGC 4430050 32 96.9 35 ........................A....... TCTTTCGGCGTCCTGCTCAGAGCTGCCTTCCACCG 4430117 32 96.9 34 ....................A........... TTTCTTTTGGCTGCCTTGGCCGGCCTCGGGCAGA 4430183 32 93.8 0 ....................C...A....... | ========== ====== ====== ====== ================================ ==================================== ================== 52 32 99.7 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GTCAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAGGCCCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAATGACTGGCAGCGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCCCCTCCTCTTCATTCCTGCAACCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGGGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGGATTGTGGGACCGTGAGCGGCTTTGCCCGGCGAAAGCCCTGCTCTATGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTGGAGGAATGGCGCGGGGTTATAAAGACGCCGTC # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACGCTCCCGCCTATCGCCTCAGTCCGACATCCACCCAGCCCTCCTCCGCTGACACTGCCCCCATGCCACTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGGCAACGCCAACCCCCTCATCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGTCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGTTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGGCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //