Array 1 83-1011 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABJ01000059.1 Pseudomonas aeruginosa strain HUM-241 PA3_E2_NODE_20_length_108671_cov_28.2512_ID_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83 28 100.0 32 ............................ AGGTCCCAGCGGAGCGACTGATGGGCCACCTT 143 28 100.0 32 ............................ CGCACCGTCAACGGCCAGAACGGCCAGCAGCA 203 28 100.0 33 ............................ GGAACCTCGAAAAAGACCGGCAACGCCTACGAC 264 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 324 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 384 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 444 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 504 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 564 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 624 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 684 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 744 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 804 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 864 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 924 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 984 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37350-38758 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABJ01000100.1 Pseudomonas aeruginosa strain HUM-241 PA3_E2_NODE_45_length_48761_cov_26.8939_ID_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37350 28 100.0 32 ............................ ACCCGTACCGCCATCGCTGCCACCATCACCAC 37410 28 100.0 32 ............................ ATGCTGAGGGTAGCTACAGCACGAAGTTTCGC 37470 28 100.0 32 ............................ TACGTGATCCTCGCCGAAGAAACGCCGATGCC 37530 28 100.0 32 ............................ GAACTCTATCCGGAGACACACGATGAAGCGAA 37590 28 100.0 32 ............................ TGGACCGCTAGCCCAGGCGATCCGGGACGACT 37650 28 100.0 32 ............................ CAGCGGTTCCTGGAGCAGTTGGATATCAGGCC 37710 28 100.0 32 ............................ AGGGTCAGGTCGTCGGCGTGAGTCGGCACCCA 37770 28 100.0 32 ............................ GATCACCAGCGTGACGAATCGCAGCCAACCCA 37830 28 100.0 32 ............................ TCAACGGGGATGCTAACAGCCAGTATCATACC 37890 28 100.0 32 ............................ ATGAACACAGACTCCGAGGGGCGGCCAGAGCG 37950 28 100.0 32 ............................ AGCCATTCGATGTGACCCGTAACTCGCTGGTC 38010 28 100.0 32 ............................ TCAGGCGAGTCGATGCCGGCATCGAGCAGTTC 38070 28 100.0 32 ............................ CACTCCAAGCGTGATCATGGCGGCGTTTCGCA 38130 28 100.0 32 ............................ GATCCGCGTGTCTCGGTGCTGCTGTTCAACAC 38190 28 100.0 32 ............................ TCGAGGTCGGCCAGGTTCAGGCGGTTGACGTC 38250 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 38310 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 38370 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 38430 28 100.0 33 ............................ CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCT 38491 28 100.0 32 ............................ TAAACGACCGCACAGTTACTCAGTACGTCGAC 38551 28 100.0 32 ............................ GCATTGCACGCTGGTGGGCAACGGGTGCGACC 38611 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 38671 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38731 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48680-47632 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABJ01000100.1 Pseudomonas aeruginosa strain HUM-241 PA3_E2_NODE_45_length_48761_cov_26.8939_ID_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48679 28 100.0 32 ............................ GTGGAGGCCGCGTGATGCTCGCGCCTACTCTC 48619 28 100.0 32 ............................ AGGAACGCCACCAGGGCGCAGACGGCAACCAC 48559 28 100.0 32 ............................ TACAGGCGAGATCATCGTGCGCCTTGCAAAAG 48499 28 100.0 32 ............................ ACCTGCATCCAGAAGGGGGCCGAGGTGATGTT 48439 28 100.0 32 ............................ GTTCGCCGGGCCTTCGTCACGGCCCGTAGAAA 48379 28 100.0 32 ............................ TGGAAGGCCCTACGAGAACTCGCCGGGCTAGA 48319 28 100.0 32 ............................ AGCAGGAGACCGGGGCCTTTGCCCCGGCGCTC 48259 28 100.0 32 ............................ ACTCAGTCGGCGCGCTCCCTGGCGAAGGGACA 48199 28 100.0 32 ............................ GCCCGCCCCTCGGCCGACACGTACCGCAGGAA 48139 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 48079 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 48019 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 47959 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 47899 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 47839 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 47779 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 47719 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 47659 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCTCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTTGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //