Array 1 51387-50169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWF010000008.1 Listeria booriae strain FSL L7-0818 NODE_8_length_120186_cov_80.589548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 51386 30 100.0 36 .............................. TTAGGTGAACCTACTTGATATGCCAATTCATTTTCA 51320 30 100.0 37 .............................. CCTGTAGGGGTACCGGACAGCAATATAACGTTGTCTG 51253 30 100.0 36 .............................. ACGAGTATTCTGCTGGTTGGGTCAGTGCGCTTTATT 51187 30 100.0 37 .............................. TTGTTTAGATTGTGATAAATTATGGGAGCAATATTAA 51120 30 100.0 36 .............................. CGTAGCTACAGATAAAGTAGGAAGCGCCATAACAGA 51054 30 100.0 36 .............................. TCCTTGGTCGTTACGATGTAGCCTGCAAAGAGGAAC 50988 30 100.0 35 .............................. TTTTGTATATAGCTGTTCGCCAAACTCATCTGCGC 50923 30 100.0 34 .............................. ACCTTTTTAGCTGCAAAAAGATTGGATTTGCGGT 50859 30 100.0 36 .............................. GTGGCTGTTGGTGAAAAGAATTTTCCGCCGAATACG 50793 30 100.0 35 .............................. CTGTCTGATCGACTGTATACTCCAATCCTACACAT 50728 30 100.0 38 .............................. GTCAATATGCTGTCTAAGCAATGTCATGACGCTAGAAT 50660 30 100.0 36 .............................. ACACAAATTGCAGAACCAGAAAAAACAGTCAGCGAT 50594 30 100.0 36 .............................. TTGGGCTTCTCTAAGGTTAGAGGTTAAACAGGCATC 50528 30 100.0 36 .............................. AGTATTCTTGGCCAATCACTTGACCATTTTCATTTA 50462 30 100.0 36 .............................. TACAGCAGCTTTAAAAAAGTAATACAGCAATCTAAC 50396 30 96.7 37 A............................. TTGATAGATTTGCGATAGCTCGGAATAACAGCAATCA 50329 30 96.7 36 ...............G.............. TTTTTTAAGTATAGTAAATTCAATTCTTCGGCCTTT 50263 30 90.0 35 CG.................A.......... CCGCGAATATTCGTCAAATGTATCAGCTGATCAAA 50198 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.1 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGTAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGACATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGCATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATGCAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 226900-225569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWF010000004.1 Listeria booriae strain FSL L7-0818 NODE_4_length_355853_cov_83.536430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 226899 30 100.0 36 .............................. TCGGCTCCAAGTGCGAATTTGAGTGCGCTGGTCATC 226833 30 100.0 36 .............................. TAAATTCGGACGTAAGAACCGCGACAAGGTGAAGCT 226767 30 100.0 35 .............................. TTCACAGCGAACGAGGTTAATCCTATAGACGCGCT 226702 30 100.0 35 .............................. AAACAACCGATTTAACATGTGTTTCCCTCAACTTT 226637 30 100.0 35 .............................. TAACATAGAGTTGTTACCCAGTCACCCGATTTTAC 226572 30 100.0 27 .............................. ATAAATCACGTTCCCCAACGTTTTATG Deletion [226516] 226515 30 96.7 37 ....G......................... GCTTTCTTGTTTGTTAAAAAAGCAAGTAGCGTGTTGG 226448 30 100.0 37 .............................. TTGCTAACATAAGCTTCGGCGAAGACTTTATACTTTT 226381 30 100.0 37 .............................. TACAGTTAAGTTGAATGAGACAAATGAGGCAAAGACA 226314 30 100.0 34 .............................. ATAAAATATACGCAGGTCAAAAAATCCGCGTAAA 226250 30 100.0 35 .............................. AGACAACAAGGCGGTTTCTACGAAGGGATGTTTGA 226185 30 100.0 36 .............................. TTGCTAACGATTGAAGTCTCACCTACAACGATATCT 226119 30 100.0 35 .............................. TTAACTCTTCTTCTAATAGTTGTTTTTTCTCATCT 226054 30 100.0 36 .............................. CGAAAGGGGCTGTAATGAGCGGTAAGGACGTATCAA 225988 30 100.0 35 .............................. CCCGTTAACAAGTCGGTACTTGTTGGCGAAGAAGG 225923 30 100.0 34 .............................. ACGATTGCCCAGCGTCGGAGCTTATTCCAGCCAA 225859 30 96.7 35 .................G............ GCAACATAATGCGAAACGTGATACGTAAAGACTTC 225794 30 96.7 34 .................G............ ACAAGTAATGATTTGTAGTTGATTTGGTCGATCA 225730 30 100.0 36 .............................. TCGTCATTTGTTTCAAATTCTGTAATCGTTGTTGGT 225664 30 93.3 36 .............C...G............ AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 225598 30 80.0 0 A......C.C.....C.......CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 98.3 35 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGGTTGATCCTGTTTTTGGTGATTGGCTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCTAGCGCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 339076-339508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWF010000004.1 Listeria booriae strain FSL L7-0818 NODE_4_length_355853_cov_83.536430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 339076 36 100.0 30 .................................... ATACCCAGGAATAGAGTACACAATTGTTGA 339142 36 100.0 30 .................................... CGTTTGAAAAAAATCCTGATCGTCCTTTTG 339208 36 97.2 30 ...........................T........ CGGAGTTCCAGTATATTCGGCCTGATGATG 339274 36 100.0 30 .................................... ATGTTCCCTCGAGATCCATCACTTTCGCCA 339340 36 100.0 30 .................................... ATGCTTTACAGCGCAATGGGTTTGAGCGTC 339406 36 97.2 30 .........A.......................... TGTCGATGTACAAAAAACGCGAAATCAGCG 339472 36 86.1 0 ..........................TG.A..C..A | A [339501] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGTAATTATACACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTGGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTACACCAAACGATTTTGAAAGAAAAACGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGCGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACATCAATATTAAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 194144-195941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWF010000002.1 Listeria booriae strain FSL L7-0818 NODE_2_length_724849_cov_76.857958, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 194144 30 100.0 35 .............................. TTCTATGCAAGGAACAGCAGGAGCAGAAGCCTTAT 194209 30 100.0 36 .............................. TTGCATATCTTGCTGGCAACATATATGAAAGCGAAA 194275 30 100.0 36 .............................. TTTTTCGCATCACTCCCTTCACGCCAGCGATTAGTT 194341 30 100.0 37 .............................. TACGATATAGATAATACTGCCCTTGATAAAAAGTAAC 194408 30 100.0 35 .............................. ACATTTCTTTTGCTATTTTTTCCGTTGGTGCTTTT 194473 30 100.0 35 .............................. AAATCAGTCTAAGACAGCTTTTCTTAATGATTTAG 194538 30 100.0 35 .............................. TCACAACAAACGACTTAGGTGATGTTGGGAAGAAA 194603 30 100.0 36 .............................. CAAACACTCGGCGAGAAAATCATGGCGCCCCTTACG 194669 30 100.0 34 .............................. TTTTGCTTGTACTTAGGTAACAATTGTTCATCCA 194733 30 100.0 34 .............................. TATCTTTCATGCTATCTCCGCGGACCTTTAGCCA 194797 30 100.0 36 .............................. TAATATTTTCGTTATGGGACAATGTCTCTATAAAGC 194863 30 100.0 36 .............................. CAGTCAATTTTGCCTTGATGGTGTGATAAGTCTACA 194929 30 100.0 36 .............................. CCTCTTAGAGTGCTTGTAGAAGGGGTACACGGAGTT 194995 30 100.0 33 .............................. CCCCCCCCCTATTATACCTTATACACCGTTATT 195058 30 100.0 35 .............................. CTGGCTCTGCTAGGGGATAGCCTAATACATCCCAA 195123 30 100.0 36 .............................. CTTTATACCCGTGTTGAGGTGTTAGAAGAAAAAGAA 195189 30 100.0 37 .............................. AGCTACATAACCTTTCAAATATTCGTTTGTGGACGCA 195256 30 100.0 36 .............................. CGATTAAGCGGCTATGTCATAAGATTGAAACGGATG 195322 30 100.0 34 .............................. GCAAACACAGAACTTTCTTGGCGCAGTGTCCCTG 195386 30 100.0 38 .............................. CCTATTCGTGAGGGTTCATTATTGATGACATCAATCAA 195454 30 96.7 35 .................A............ CAGCACAACGGAACAGGCGGCGATGGACAATCTGA 195519 30 96.7 35 .................A............ ACAACATCCTTATCGCCCCATGATGGCTTCCCATA 195584 30 96.7 36 .................A............ ACTGCATGGGCATCCACCCAGCCAACAATCTTGCCA 195650 30 96.7 35 .................A............ CGATTACCTCGCGTAGCTTTTAAATGCTTTACAAA 195715 30 96.7 35 .................A............ GACGGCACATATAAATACGCGGCTGTATCTAAAAC 195780 30 96.7 37 .................A............ ACGCTGAAAACAGAATGAAGGAGCGCATTTATCGTAA 195847 30 100.0 36 .............................. AATTCTGACGGGTCTATCAATGAATCTGTAATACTA 195913 29 83.3 0 .................A..-...C..G.C | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 98.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATAAAATCCTAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTATTTTTGGAGGTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : CTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACCTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGATGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //