Array 1 18021-14334 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000014.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 18020 30 100.0 37 .............................. CTCCAACCCTTTGGCTTTGGCATTTATTTCACCTCAA 17953 30 100.0 37 .............................. AACAATTAAATGACTTTTACGAATTTAAAATATTCGA 17886 30 100.0 35 .............................. TTATTTTCAAGATACAAAGCCATGCATAATACAGA 17821 30 100.0 36 .............................. TTTTATATATTTTGAAACTTTTTTATTATTTGCATC 17755 30 100.0 36 .............................. ATCCTCTTTTACAATTTCTTTATCTGCATCTGCAAT 17689 30 100.0 37 .............................. GTGGACCTCTGTATAATGCCAAAGGAGCTAAAATACC 17622 30 100.0 36 .............................. GCTTTTTATCGATGTTTGTACATTATCTGCCAATAT 17556 30 100.0 36 .............................. TACATATCTTGTAAAATATAATAAATTGGATGGAAC 17490 30 100.0 36 .............................. TTAGAAAGGTATTCTTGAGCAAGCTTCCATGTTTTT 17424 30 100.0 36 .............................. ACCTAATAAAGCTCGGCTTTGCGCCGAGCCTACTAT 17358 30 100.0 37 .............................. AAGCTTACAATCTTTCGCTAATAAATCCTAATTTTGC 17291 30 100.0 38 .............................. ATAAATGTTTTTGAAAGTGATTCTTTTAATATTTCTTC 17223 30 100.0 37 .............................. ATATTGGTAGTGAATTTCCTGCTGTTGTTCAGTTAGC 17156 30 100.0 36 .............................. GAATACTTTATAGGAAAATTAGCAATAACATATCTA 17090 30 100.0 40 .............................. TGGAATCATAGACACTTACAATTTTTTGAGCATAATTTGG 17020 30 100.0 37 .............................. ACTACAAATGCTATATATTCTCCAAATTCCTCATTGT 16953 30 100.0 35 .............................. CGAAATATCAAGTACCCGGAGTAAGCGAAGTATTC 16888 30 100.0 37 .............................. ATATATTAAAGTGGAGGAGAATATGAATTGTTGGAAT 16821 30 100.0 35 .............................. TAGACTGGAATTCTCAGTTTGCAGGGATACAGACG 16756 30 100.0 37 .............................. ATGAAAATGTCCCAGATGTAGAAGGTATAATTTACCA 16689 30 100.0 37 .............................. ACATTATCAAGGTCAATGGCAATTTCTTTAAAAGCAT 16622 30 100.0 35 .............................. TTTCTCCTACTTCGTTTGTAGTTTCAACTAGTCTT 16557 30 100.0 36 .............................. AAAATATAAATTTAATGAATTGTATGACAATTTAGA 16491 30 100.0 36 .............................. ACAAGTTCTATTCTTGTATTAAATTCATCATTTGTA 16425 30 100.0 36 .............................. ACATTATTTGACCTGTGCTATTTTTTATAATAAAGG 16359 30 100.0 37 .............................. TTTATGAGGAACTGTAACAACTGCGTCTGCTGCCTGA 16292 30 100.0 38 .............................. AAGGACTTTGCGTATTGTCTACATTAAACTTCTTGTCT 16224 30 100.0 36 .............................. AGTGCAAAAAGCAGTTCAAGGCCTTGCAACAGATAT 16158 30 100.0 38 .............................. TTTAATTTCTTTGCTAATTTATCACGTTTTTGAAGTTT 16090 30 100.0 36 .............................. GCTTAAAACAAAACAAGGAGTGACACAACAACAACT 16024 30 100.0 35 .............................. ATTTGTAGACAGTGCGGAAATTTAGTTCCAGAGAA 15959 30 100.0 35 .............................. CGCTTAATTATCCTGATATAACACAAGTGACGACG 15894 30 100.0 37 .............................. TTGGGATGCTATCGCTAACCAATATCGGAAATTGAGA 15827 30 100.0 36 .............................. CTATTTTTGCTTTGCCTCGCTTAAGCAGTTTCCTTG 15761 30 100.0 36 .............................. TAATGCAATTAAAACAATTAAGTTAAATTAAAATTA 15695 30 100.0 37 .............................. AAAGAAATAAATAAGCAAAAGTATAAAAAAAGAAAAA 15628 30 100.0 36 .............................. TTAGATATTTGGGAAAGTCAAAAATTTATAAGGTTA 15562 30 100.0 34 .............................. AAAATAAACAAAAAAATAAAGCAGGCTTAACCTG 15498 30 100.0 38 .............................. ATAACTCCTTTCCTTAACTCTATATATATAATAACATA 15430 30 100.0 38 .............................. TTGACTGAGAAGTTTCCTTTTAGTTTGCCTTGGGATGT 15362 30 100.0 37 .............................. AATGTACTATCTGCTTTATCCCAACTATTCATTGGGT 15295 30 100.0 37 .............................. TGACTATGGATGAGAAAGCAAATATAATTCTTGAACA 15228 30 100.0 38 .............................. TGGTAAAGTTACAGCAATAAATGGTTCAAATATTACTC 15160 30 100.0 37 .............................. CTTGTATTTTGTAATTTCACAAAGTACATATCATATT 15093 30 100.0 36 .............................. ATTACAAAATTTATTGAATTTGCAATACTTGGACCA 15027 30 100.0 37 .............................. GTTAATCAAGCTATTCCATATATCCTCTGCACCTTGG 14960 30 100.0 38 .............................. TTGTTTTATCTATGCTGCCTTTTGCCTTTACTAATTTT 14892 30 100.0 35 .............................. ATGGTTTGCCTAATATGTTTATCCATTCTCTTAAA 14827 30 100.0 37 .............................. TTTGGATAAATTGCTATGAAAGGTTTATTGACATCAT 14760 30 100.0 36 .............................. CAAATATGACATTATTCGTAGCACAAAACAATACGG 14694 30 100.0 37 .............................. TTGAAACTTAGCCAATATTCCATCTTAAGCACCTCCA 14627 30 100.0 35 .............................. CTTATAAACAAATTCGGTTATAAAGTGTATGGCAA 14562 30 100.0 37 .............................. TTCATAATAATGTTAATATTGGTAGTGAATTTTCTGC 14495 30 100.0 36 .............................. TTTTTATTTCACCTCCATATTCTTGAGTTTTTCTAA 14429 30 100.0 36 .............................. TGGATTAGAAATCTTAATAAAGAAGGTAAATCTGCT 14363 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 56 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : GTACGACAGTGATGATGATACGCCGAGCGTAAGCAATTTTAAACTTATTGATGATGAATACTACAAAGTAGACGTGTTTATAGAGTATAATGAAGAAGCAATTAACCTATGGCAAAGGTATATCGATCTTAAAAAAATAAAAAATTTGTATAAAAGGCGGAGCACATTTGATGAATTTAAAGCTGATTTCTATAAATACGTAATATCAATACCAGAAAAGACAGAGAACATGCCTGCAGAAGTAGAAGGATTCAAATATGTCAATGCCGATTCTTTAAAAGATTATTATGATGCTGAAACAGGGTTTAAGCCAAGTGGCGTATTAAGCATCTGGTAGATGTCGTCGATATCCAATAGTGCAAAAAATGCTGGACATCGACGACACTTTGCCATAACGAAAAGTTGAATTTTCGGCAATTTGTGGTATAATAAAGGCATAAGCTTTACAAAAGACACCTTTTATGCAAGATAAAAGTGTTGAATTTTCTGTGCTCTAACGC # Right flank : GGAGGGATTCTTATGTTTAGAAATAAATACAAATTAATGGTATCTATCAGTATAATTGTATTGTTTTTATTCGTAAATGTATATGCTGTACCGTATATAAAGTTAGTAATAAACGGACAGCAAGTCAATACAGATGTACCGCCACAAATAGTAAATGGTACAACATTAGTACCAATACGTGTAATATCCGAAAGTTTAGGTGCTAAAGTTGACTGGGATGGAAACACCCAAACTGTCAGTGTAACAATGCCGAGAGAAACTTTAGAAGCTCACACAGTAGATACCTTTTGGGAAGCGTGTGAATCAGATACCGTCACAGAACCTATAATAGACGATTCTGTAACACCAGAATTTAAAGCTGTTTTACAAAAAGCTTTGGCACTTCTTAAAGAAAAAGATAATACTACGTATAAGTTTGTTTGTGTATACATTCCAAGAATAGCTGTACAACAATACAAAGATAACATTGTTGGTTCTTGGGTAGATTATACAACACACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13374-12629 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000018.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13373 29 100.0 38 ............................. GAAATTTTTTCGACCAACATTTCAGCCTCTGGCTCATT 13306 29 100.0 37 ............................. GAGCAGTTAGGAGCTATGCCTTATATAAAAGATGGTA 13240 29 100.0 36 ............................. AAATTGGCTGCAAATGTGTTAAGCGACATACCAAGA 13175 29 100.0 37 ............................. TCTAAGTATCTCACAACTGCTCTTAAACAGTAAGCTA 13109 29 100.0 36 ............................. TGTCAAAGTTGCACTACTGCTTGTCACATTGCTACT 13044 29 100.0 37 ............................. TGGGTATATTCTGGCGATTACTTCTATAAACAACCGA 12978 29 96.6 36 ..................G.......... TCGAAATAACTTATCTCTACTTTTTTTACATGTTTG 12913 28 82.8 36 .......-.G..T.G...G.......... TTATATCCAATCTGGAATTGTGCTTTGCAGCCTTGT 12849 29 79.3 37 .......T.T......T....A...A..T GATATAAAAAAAACTAAGATATTATCTCGAATTAAAA 12783 28 79.3 29 ....A..T.T.T.C...........-... ATGATAAAGGGAAAGCGGATGGAAAGGTA G [12763] 12725 29 82.8 37 C....G.......CT...G.......... ATTACATACAGGACAATCTTTATGAGTTCAATAAAAG T,T [12713,12718] 12657 29 79.3 0 A...T.........C......A...A..A | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 91.7 36 GTTTGAAATATCCTATGTAGGTTTAGAAG # Left flank : CTAGAGATAGGAAATCAAATGATTTATTACACAAAACAAATTCCAACTGGTACTTTAATGATACATGGATTCCATATTAATAAAGCAAGCGATATTGAAATTTCTTGTTTCTATGCTTTTTTAAAAACATTTATTGAGGTTGGTCATGTTGGAGGAAATATATCAAAAGGTCATGGCCAAATAAAATGTGAGTACTATCTTGAGGATGGTACAGTTCTTGACGATAATACATTAAATAATTTATCTGAACCATTTTGGACATATTTAAAGAATAATAAAGATAAAGTATTAGAGCAATTATCTAACTTGAAAGATATATTACAAGCTAAAGTTAAAGATAAAAATAATAAAAGCAAAAAAGAAAAAAACGAGGATGAAGAAGAATAAAGTCAGAAATATTCTTGTCGAAGTCCCGATGTTTTTGCATCGGGAGACATCGACTTGATATTTTGATTACTTTATACTTTAAAAGCATTGATATTATCGCTTTTGCTTTTAGG # Right flank : TATAAGATGATTTGTAATATAAATTCCCTTTTGGGATATTGAGAAAGGAAGATATAAATGACGTATAAAATAACTATTTTCCTAAGAGCGCCTATAGCATTTCAAACAAAGAAAAAAATACAACCAATTCATTTTGATGGTTTATTAACTGCTTTAAGTGTATTTAACAATGGAATATTAGACAATCCTATTCCCCAGGAAGAAAATAATATTGAATTGCCCATAGTAAAAGTAGGTAATGAAAAAAAAATATATAAAGCATCTTGCATGAAAATAAATCAATCTAAAAGTAAGGTTTATAGAGATATATGGGTTGGATCTACTTCATGGGTCGATTTTGTACCTTTTAAAGGTACACTAAATAGTTCTTCAGGAATATACAGAGCAAAAGCAGGTTTGCTAATGCTTTTATCTACTCCATATATTGAATTTTATTTTGATAGCAATGACATAAATGCTGTTATTAGTTTGCTCAATAATTTGACTCACATAGGAAGTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAATATCCTATGTAGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 19409-19769 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000004.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 19409 31 100.0 35 ............................... CACCAGTAGAGCCGAAACCGGAGAAACCGAAAAAG 19475 31 100.0 36 ............................... TAGTAAGGCGTGAAAACAATATAGATTTAGGCTCAA 19542 31 100.0 35 ............................... AATGTTTGAGCGTCACTCTCGCCTTCTACAAGTAT 19608 31 93.5 33 .....................A........G AAGTATTCGCTGGAGGATTTGAACTCGTCCCCG 19672 31 100.0 35 ............................... TGAAATAAACACTCATAGATTTTCACCGCCTTTAA 19738 31 93.5 0 ...........................T.A. | T [19764] ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.8 35 GTTTAGGTAGAACCATTGTGGGTTATAAACT # Left flank : AAGTATACAGTAGTTATGATTATGAAGTGTTTTTAGATCCGAGGCTACATAACTACTTAAATGAATTGCTTACCGAAAAATATGACAATAAAGACTTAAGAAAACAGTTTTATGAAGAGTTTGACGGCATAACGGTATATCCTTTTGCTTTCAAGGATAAAGTGATAGAATCAATAGATAGCAGGGATTTTTATGAGTTGGAACTTTATAAAATTTCGTTAAACCTGGGAACTGTACTGGGATTAATGAAAAAAAGATTAATAGAACAGGAAAAAATAAATGGTATTCCGATAAATTTTGTAAAGTGCTATTATGACAGTGAGATTGGTTTGGACAAAAACAGGCCACTGGAAATCAAAAAGTAATAGAAAAAGATTTTATATAGCACATATACATTGTGAATCGTCTAACAAGATGGATTTTTACATTGTCAGAGGTCGACGACGATTTTGAGGTTTTTGTATCCTGAAAGCCTTAAAAAATAAGGCTTTCAGGATGGG # Right flank : TAATACCAGAAAACTAGACAGACAAAAAGTCAAAAATAAGTTAGAATATAGTTATGAATAAGAAAGGTATGCATCTTACGACACATACCCTCGAATACGCTATTTTACTGGTGCGCCCGACAGGATTCGAACCCGTGGCCTTTTGATTCGTAGTCAAACGCTCTATCCAGCTGAGCTACGGGCGCACACTTACATACTTTATGATACCACAATTTATTTTAATTTGCAAATCTCTGCCGAATTTCGTTTGCTTAAAAAGGGCTATAGATTTTTATCTATAACCCCTTACTTTATTACTGCATTCCTGTTTGTGTTGTATTCTGCTGATTTGCTTGCTGATTTAAGAAATTGGCCTGTGCTTGCTGAGCTTGTTGAGCTTGTAATTGTGGTGTCAATTGTTGCAATTGCTGATTTGACGAATCTAATATTTTGCTCATCTGAGCAAATACTTGGTTTGCCTGTATGCTTTGCTGAGCCTGTTGAAGTGCAGCCATAGCCTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2690-1789 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000048.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2689 30 100.0 37 .............................. CTTGCTAAACTTGTTTGATCTGTGGAAGTTGTTGCAA 2622 30 100.0 39 .............................. ACTAATTAAATATATTGACGCAAAAGATTATGAAAAACA 2553 30 100.0 37 .............................. TTATTACTGCCCCATTGTTAGCCATTGCTCCAGTTTG 2486 30 100.0 36 .............................. GAAGTTGTAACATTGAAATCCATGATAACTTCTGTC 2420 30 100.0 36 .............................. GGAGAAAGAATAAAAAAACTAAGAATCCAAAAAGGA 2354 30 100.0 37 .............................. GTTGTAATTGTAAATATATCACCAACTGTCAAATGAA 2287 30 100.0 37 .............................. TTTCTTATCAAATCAAATATTTTCTCATACATTTTTA 2220 30 100.0 37 .............................. GAAGCAAAGGGCTTTGTTGTAGCCTTCACAATGGAAG 2153 30 100.0 38 .............................. TAACTTATCATTTGATTATAAAGTGATAGCATTGGTCC 2085 30 100.0 37 .............................. TGAAATTGATATAGTAAAAAGGAGTGAAATAAATAAT 2018 30 96.7 38 A............................. AGTCGATAGTAATGGGAAAATCATATCAGGACAGGCAG 1950 30 96.7 36 .................G............ AGATGTAATTCGTTACAAAGGATTTGCCCCTGCGGA 1884 30 93.3 36 .................G...G........ AAAGCTTGTCCTGCAATTGTTGCAGAAAAGTTCCCT 1818 30 93.3 0 .................G...G........ | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.6 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ACGCTAAGCGATGACGCACTGGTAAAAAGCTGCATAAATCATTATAAATATGAACCAAAGAATGAAAGAATAATATTTGTAGAAGACTTTGGACGTAAGCCTGCTGATTTGCCAAAAGCAATAAAAGTACATAGACAGATTTTAAATGGATCTTATGAGTATCTGCAAGACATAGAAGACGAGAAATGGATGAGTATAACAGAAAAGAGAGCTTTAAAATAAGTCTTAGGTAATATTGAATTTAGAAAATTTTTTAATGCAAGAAGGAATTTAGATGACCATGTAGAATATATATCATATAAAGTTGTTACATTAAGTAATAATTTGTCGTCTACCTGAGATAATGCAAAAAGTACAGGGTATCGACGACAATTTAGCAATTTACGTTTTAAGTTTTTATTTAGAGGAAAGAGGGCTTGTGAAATCATCAAGCAATAGAGCTTAACATTAACTTGGTTTTTTGCAAAAAGAGAATGGCTTCATAAGAGGAAGTGAATGAG # Right flank : AGATTTCTACAATTTGCTGTGGATAATAGCTTAACCAAGTGTATATGCTAATATAAAAGTGAGCCAAAAAGTAGCTCTGTGCTAACGAAAAAGTGATCCACTTTTCACAAAGAACCTGTAAAATTTATTATACAAGATAAATTTTACAGGAGGTCGGAAGGTGTGATTATTGATGTGAATTTATACCAAAAGATTAGAGAAATGTATACAGTACATCAAATGTCTCAAAGGGCTATAGCCAGGGAATTAAAAATTTCAAGGAACACTGTAAGAAAATACTGCAAAGGTGACAATGTTCCTTGGGAGAGAAAAGAATATTCCCGTGAGCCTGATGTCTTAACACCTGATGTTATGGACTTTATCAGACAGTGCATTAAAGAAGATGAAACAGAAGGAATAAAAAAACAGCAACATACAGCTAGAAGGATATATCATCGTCTAGTAGAAGAAAAAGGATTTAAAGGTGGAGAATCTACAGTAAGATTGGCTGTGTAACAACT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12410-11175 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000049.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 12409 30 100.0 37 .............................. AATTGTCAGAATTTTTTAGCTGTCAATTGTGCGAATT 12342 30 100.0 36 .............................. TAGTTATTCCTCCAGAAATACCCAACAACGAATTAG 12276 30 100.0 39 .............................. TCTAAAAATAACATATCTGATAACAAATTCTCCGAATTT 12207 30 100.0 38 .............................. TGGGTATAGTTAGAGGTCTTAATTATACCCATGATAGG 12139 30 100.0 36 .............................. ATATCTTTTTCTTTTGCTCTCAACATCAACTATAAA 12073 30 100.0 36 .............................. TTCTAAGCCCAGCGTTTCGCCTCTACGTGTGCCTAA 12007 30 100.0 36 .............................. AACGTTGGGAGTGAAATAAAATGACTTATCAAGAAT 11941 30 100.0 39 .............................. TCATATAAAACCTCTGCAACTTGTTTAGGGGAATTTAAA 11872 30 100.0 38 .............................. TTGGGCTTTGTATGGAGTAGAGAAAAACAAAAATGGTA 11804 30 100.0 36 .............................. TACTCTTCCCCTTCATTCCATAGCATCTCCCAATGT 11738 30 100.0 37 .............................. AGAGATAAAAATGATAGAGTTGCACTTGTAACAATGA 11671 30 100.0 36 .............................. ACTGCATTTTCATAATCAATGTTTTTTGCGTTTTGA 11605 30 96.7 37 .....................A........ AAATTATTTTCTTCATAATTAAATCCTCCATTCTCCA 11538 30 100.0 38 .............................. AGTTTTATAAATTTTGTTAAAAAACAAGATTTAGGGAA 11470 30 100.0 36 .............................. AAAATAAAGGAGGTAACTCAAAATGGCACAAATTGG 11404 30 100.0 37 .............................. TCAGATACAGAATTACGTCTTAATCTCCAGGCTGGGT 11337 30 100.0 36 .............................. TTAGGCATAATTATCAATCCTCCAAAATTTTTATTT 11271 30 96.7 37 .......................A...... GCTATATCATAAGCTTGTATAGCTGCCTCAGGAATGT 11204 30 83.3 0 ........C........A...A...A...T | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.8 37 GTTTTTAGTCTACCTATGAGGGATTGAAAC # Left flank : TATTATCACTACTTGTTACTGTCTGTGTTGATGTTGTTGTGTTGTCAGATGTACTACTTGTTGTATCATCTGCAAAAGCCATGAATGGAATGACAACTAATGATAAAATTAACATTGTTGCAATTATTTTTTTTAACATAACATCCCTCCTAAAATATTTTTTTAAATTATACCATAAAATTGTAAACAAACTGTGAACAATTTATAGCTAATTTGTGAACAAAATAAAAATATACAATGTAGGTATAAAAAGTTAAAATGAAAGGAGGAATTTGGAGAATTATGTAGAATATATATCATATAAAGTTGTTACATTAAGTAATAATTTGTCGTCTACCTGAGATAATGTAAAAAGTGCAGGGTATCGACGACAATTTAGCGATTTATCTTTTGAGCTTTTCTCAGAAAGAGCAAGACTTGTGGAATCATCAAGTATGAGAGCTTAACATTAACATGGTTTTTTGTAAAAAGAGAATGGCTTGAAAAGAGGAAGTGAACGA # Right flank : TCCATAGAAAGAGGTGCATACATATCTTAAATTACGAGAATTAAATCCAGTCTTTTTTAATTTTTAGTCTACTTAATGAAAGTTAATAAAATATGTTTTTAAAAAAAGACAAGGGAATAATATGCCTAATTATTCATTTAAACGTAAAATTTGTACGTTAATAAAAAATGAACCAAATTTAGTTTAGGAGGATTTAAAATTATGGGAAATAAAGTTTTGGTTTTAAGTGTGGGTACTAATCCATTGCCTAATTATGTTGTGGGAAGTTATCTAAAAGAAAAGTATGATAAATTTGTATTAATTTATTCTGAGGAAAATCAAAGAATTAATCAAAATGGTACGGGTAATTTTGCTAAAAAATTAAAAGAACATTTAAATTTAAATGATAAATATGTTTTTCTTCCTCTTTCCGATGTTTCGGACTCAAAACAAATAAGAAAAGATTTGAATAGTTTATTTCCAAATGATAATTTTGAAGAAATCCATTTAAATTATACGGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 4628-3527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000030.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4627 30 100.0 36 .............................. ATTGATATAACTTGCATTCATTGGTGTTAATTTTGT 4561 30 100.0 36 .............................. ATAAGCAGATTTTTATAAGGGGGTGTGTTTTTATTG 4495 30 96.7 36 ............T................. TTAATACCTATAATCAAGTAAAGTATATAAACGCTC 4429 30 100.0 39 .............................. GCTATTGCGCTTAAGTCTGATTTTTTGATGTCTTTTGAA 4360 30 100.0 38 .............................. TTTCACTTACTTTTCTAACATCTTCTAATGAAAATTCA 4292 30 90.0 40 A................T...G........ TATAGATGTAGCTGGTGATATTGTTACAGGAGTATTGCTA 4222 30 93.3 36 .................A...G........ TAATTTGACAATTCCTCAATAGCACGTTGTACTTCT 4156 30 93.3 35 .................A...G........ TAGTTTGCCCAGAACTAACAGCATAACCAAAACCT 4091 30 93.3 36 .................A...G........ TGCTTTTGTAAGAATTAAGCACACTGTTGTCATACG 4025 30 100.0 36 .............................. TCACAGCGGACATAATATTCTTCAAGACAGTCCGGA 3959 30 90.0 38 A.......T............G........ GGTGAAAAGCCCAGTTTATCCGCTTCGATGTATAACTT 3891 30 93.3 36 .................A...G........ GGATTTTCCCATTTGTTTCCGATGATTTTGACATAT 3825 30 100.0 38 .............................. ATGTATGTTGTAATAGCAGTTGCTTATCAGGTAGATAA 3757 30 96.7 36 A............................. TCGCAAAAATCTATATCATCAGGATGCCAATCAGCG 3691 30 96.7 39 ........T..................... TTGTTTATCTCTCCTTTAAAAATTATCTTAGTTTTTTTC 3622 30 86.7 37 ........T........A...G.......T ATTTTTTTATTTTTGACAGATAATCGCTGTATGCTTT 3555 29 93.3 0 .........................-...T | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 95.5 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CGAAGATTTTTGACCATGTATATGCAGATGGATTGTGGTGGTATAACAGACATAGTAACCAAAGATTAGGGAATTTGCTTGATTTTCGTATTGGAATTATTTATGAGATATCAAAGATTAAATATCAAATTGAGAAAGAAGAAGGGAAAAAATAATCACTCTGTCTTATATGCAGAGTGGTTAAATAAATTTTTCACTGTATTGCAATCGTGCTTTGCGGTGCCAATTACTTACACAAAATAAGCAATCATTTTTTTTAATGCAAGAAGGAATTTGGATGACCATGTAGAATATATATCATATAAAGTTGTTACATTAAGTAATAATTTGTCGTCTACCTGAGATAATGCAAAAAGTGCGGGACATCGACGACAATTTAGCGATTTATCTTTTGAGCTTTTATCAGAAAGAGCAAGGCTTGTGGAATCATCAAGTATGAGAGCTTAACATTAACTGGTTTTTTGCAAAAAGAGAATGGCTTCATAAGAGGAAGTGAATTA # Right flank : AAAAACCTTAGCGAACATTCTTTACCTTCTATGGATAAAAAGTTCATCAATTAAAATTTTTTAAAGTGGGTGTAAAGTGTTATGACAACATATTATGATGAAAGTGCTAAAAGACAATTTTTTTTACTAAAATTTAAGGTTATGCTTTTAGAGTCTGATGGAAATGCATTTGAACAATTTGTGAGAAAATTATTTCGTAAATATGATCCAGATATACGATTTACAAAACCGCAAGGTTCAAAAGGTGATGGTGGTAATGATATGTTCAAACCTCTTTCTGGAGAATATTATCAAGTATATGGTCCGGAATTTTTATCAGGAACAAGTATTAAAAAAGCTGCAGAAAAGATAATAGATGATTTTGATAAAATATATAGGAATTGGAATATGCATTATCCAATAAAATCATATTATTTTGTTTATAATGATAAGAAAAAAGGTGTGTACCCAGATATATACGTAGCATTAGAAAAAATAAAAAGCAAGTATAATATAAAGTG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 26620-26128 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSN01000030.1 Thermoanaerobacterium aotearoense SCUT27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 26619 29 100.0 37 ............................. TTTGTTTTTTGCTCATCATTCCATCCACTTTTTGAAG 26553 29 96.6 37 .......C..................... GGTTCAGAAGAATTATAATTTTTAAGTATTTCATTTG 26487 29 100.0 38 ............................. ATACATCAATTGTCAGATTATTTTGTTTTTAGTGAGTG 26420 29 96.6 37 ....................G........ AACGTCCTCATTATCCCTGAAGGATAATTATTAGGAA 26354 29 93.1 38 .......C........A............ ACCTTCCTTTGTTTAGATTGTTATTGCATATTTCTGCA 26287 29 89.7 36 .......C........A...G........ TTTCGAGATACTGTTATATTGCTTGTTACATGTATG 26222 29 93.1 37 ................A...G........ GGAGTTTCACCCAGTACTATTAGATTATATGAACAAA 26156 29 89.7 0 .......C.........G..........T | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 94.9 37 TTTTTAGTCTACCTATGAGGAATTGAAAC # Left flank : GCTAAGCGATGATGCACTGGTAAAAAGCTGCATAAATCATTACAGATATGAACCAAAGAATGAAAGAATAGTATTTGTAGAAGACTTTGGACGTAAGCCTGCTGATTTACCAAAAGCAATAAAAGTACATAGACAGATTTTAAATGGATCTTATGAGTATCTGCAAGACATAGAAGATGAGAAATGGATGAGTATGACAGAAAAGAGAGCTTTAAGATAAGTTTTAGGTAATATTGAATTTAGAAAATTTTTAATGTAAGAAGGAATTTAGAGGACCATGTAGAATATATATCATATAAAGTTGTTACATTAAGTAGTAATTTGTCGTCTACCTGAGATAATGCAAAAAGTGCAGGGTATCGACGACAATTTAGCAATTTACGTTTTAAGTTTTTATTTAGAGGAAAGAGGGCTTGTGAAATCATCAAGTAAGAGAGCTTAACATTAACCTGGTTTTTTACGAAAAGAGAATGGCTTCATAAGAGGAAGTGAATTAGGGT # Right flank : TAAGGAAATAAAAATTAAGGAAATAAGAATAATAGAGTAGGTATCTAAAACCTACTCTATTGGTGAGTGTTAATGATTTTATAGTCTTAGGAAACTTTTATTCCTTTTTCTTCTGCTTTTCTCTTTTTGCTTTTATACCTTCAAGCAAAGTTATCACATTCTCTTTTTCTTCATCAGTCATATTAGGAAGATCATAAAATGCCAAAAGAACATCTGGACCTAATTCTTGCATAACTTTATGAAGCCTTTCATCTACGTCATTTGATGTATCTATATTTCTCTTATCTGTTCTACCCAATAAATAATCTACTGATACGTCAAAGAAGTCGGCTATTTTTTGTAAAGTTTCGGGATCTGGTTGTCTTCTGTTTATTTCATACATAGATAATGTAGAACGACTAATATTTATTAATTGAGATAATTCTTCTTGACTTAATTTTTTCTCTTCTCGTAAAGATTTAAGTCTATTTGCAAAGTTCATATAACCACCTATCTAAATT # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //