Array 1 98211-100313 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPD01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1116-2 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98211 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98272 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98333 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98394 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98455 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98516 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98577 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98638 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98699 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98760 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98821 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98882 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98943 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 99004 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 99065 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 99126 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99187 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99248 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99309 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99370 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99431 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99492 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99553 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99614 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99675 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99736 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99798 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99859 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99920 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99981 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 100042 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 100103 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100164 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100225 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100286 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116446-117250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPD01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1116-2 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116446 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116507 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116568 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116629 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116690 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116752 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 116813 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [116855] 116855 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116916 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116977 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117038 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117099 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117160 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117221 29 96.6 0 A............................ | A [117247] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //