Array 1 6213-6669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010000315.1 Streptomyces sp. SID11385 contig-7000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6213 30 96.7 31 .............................T TCCAGGGCTCACCGGCATTATCGCCGTCAGG 6274 30 96.7 31 .............................G GCGTCCTCTCGCAGCGCATCGCGGACGTCGT 6335 30 96.7 31 .............................G CACACGGGCGCCGTCGTGCGCGAGGAATCAG 6396 30 100.0 31 .............................. GAACGCGGTCAACCCGTACTTCTACCTGTCG 6457 30 100.0 31 .............................. ATGTCACTCCGTTCTCTCTGCTCTGTCTGCG 6518 30 100.0 31 .............................. CGCCGCGCGGACGGCCTCCATCGCGGTCTCG 6579 30 96.7 31 .............................G GCACCGGGTCGCCGTCCTCGGGGGCGTCGCA 6640 30 93.3 0 .....................T.......A | ========== ====== ====== ====== ============================== =============================== ================== 8 30 97.5 31 CTGCTCCCCGCGCGTGCGGGGCTGGACCCC # Left flank : GCGCCGGTGGGGAGGGAGGTGTGGGTGCGGTGCGTCGTGTGGCAGGACGGGCCGCTGCGGATCGAAGTTCTGGACGCGGACGAGGAGTTGCCGGACCGGGTGACGGAACTGCCGGAGCCGGAGGCGGAGGGCGGCCGGGGCCTGTGGCTGGTAGGGGCGCTGGCGGACCGCTGGAACGCGGAGTCGCGGGAGAGGGCGGCGGGGAAGAGGGTGTGGTGCGAGTTCGACGGGGCGTGTGCGGGGGAGGGGGTGGGGGGCTCGGTGGGGTGAGGGGGCGGCCGCCTCGCGGCGGGGGAGGCCGAAGCGAGGGCCGGCGCCCCGAGGCCCCGCAGGAACGCCCACCCGCAACCGACGGCTTTCCGCTGCGGACCCTGGCAACGGTTGGCTAGGCTCTGACGCGAACCACCCGGCCAACGGTTTCTGATACGCCCCAAATGCCCGAACCTTCAAAGCTTGCACATCTGAAGCCCCACCCAAACTAAACCCGCAGGTCACCGAGA # Right flank : AAGCAGACCGGTGAGCACTGCGACCTGGACGACGGCTCCCCGCCGCGCGGGGCCTGCCTCACCCCTTCAATCCCCCCGCCACCCCCGCTGGCACCCCCTGCAACGCAACAGGCCGCACGAACCTCTCCACCGCCGCCGTCCCCACGCTCGTCGACCACGGGGCCGACGTCGCTGGCCACGGGCCGCCGTGGACCATCACGTCACAGACCGCTACCCCCGTCGGGACTCCGTTCCAGATGATGCGGCCTGCCCGGAGGGTCAGGGCGCGGAGCAAGGGGGCCGCCGCCGGTTCGTCCTTCGGGGTTGCCAGGAGTGTTGCTGTCAGCGTGCCCGGGAGGGTGCGGGACAGCGGTCCGTACGACGACACCGGGGCCGTTGCTATGACCACCGCCGGGCCGAAGTGCTCCTCCAGGAGGGGGCCCCTCAACGCCGTTGACGGGACGCGGACCGCGAACGGGCCCTCCGGGGAGGCCGTGACCGTCGCGTCCGGGATCGCGCGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGCTGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 385-905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010001039.1 Streptomyces sp. SID11385 contig-20000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 385 30 96.7 31 .............................C CGACGTACCACGTGGATCGGTGGCTGATGGT 446 30 96.7 31 .............................G AGCCCCCTTGCCGCAGGAGACCTTCACGGTG 507 30 100.0 32 .............................. CAGCGGTCACCTGGGCCGAACGCACGGAGCTC 569 30 100.0 33 .............................. CAACTGCCGGATTCCAAAGGGCGGATAGGGCGA 632 30 100.0 31 .............................. AGCGCGAACGCCCGGCCGACTTTCACGGCCT 693 30 96.7 31 .............................T ACGACGAGTCCTGGCGGCCCTGACCGCACGC 754 30 93.3 31 ............................TC CGGGCCTCGCGGTGGCCCGCTGCCCCGACCA 815 30 93.3 31 ........................T....C GGCTCGTGCCCGTCTTCGTGGAGCGCGAGTA 876 30 83.3 0 ..........TA..C......G...C.... | ========== ====== ====== ====== ============================== ================================= ================== 9 30 95.6 32 CTGCTCCCCGCGCGTGCGGGGATGGTCCCA # Left flank : GGGGTCGCCGTACCCCGGGGGTTGCGCCGCTGTGCTCCGGGGGAGTCGGGGCGAGCGCCCCCCCTGGGGGCGGGGGTTCGGGCGGGGGCGAGCGCCCCCCCGGGGGGCCGGGCCGGGCTGGGCTTGGGGGCGGGGTGGTGGCGATCACCGTACGGGGTACGGGGGGTGGGCGTCCGGCGGTTGGTGGTTTCGGCGGGCCGTGGGCGCGATCCGTTGGGGGCGGCTCGGGGGGTGGGCCGGCTGCGGGTGGGGAGGTGGCGCGGGGCGGGCGCTAGGCTACGGGCGGTCCGAAGGACGCGCGCCGAACCTTTCGTCCGAAAGGCCGGACTCTCTACTTCTTGCTGCACCAGCCCCGTGGCCAAGGAAAAAGCGCTGCTCAGGCAGC # Right flank : AGCCATCTGGGCGCCTCCGCTCACCAGGGGCCGACTGGCAGTTTGTGATGTGCGCGGATCGTGTATCCGGATCGGGTGTCAGCCGCGCCGCGCTGTGGAAGCTGTGGACAAGCCGCAGCCCGAGCACACGCGGACCTGTGAGGTGGGTGAGGTCCGGGGTGTCTCGGGCGGCGAGTGCGTGGAGAAGGTCAGATGCGTGCGCTGTCGATGAAGCGGTGCCACGCTGTCGGGCTGAATCCGAGGTGTGGGGAGGCGGGGTCCTTGGAGTCGCGAACGGCTGGGCGCCCCCCGGGCGTGGCGACCTCGACGCAGTTGCCCTCGGTGCCGGAGTAGGAGGACCTGACCCACGCGGGATGCTGTGGATCGTCGTGCTGGTGGTTCACTCGCCTGCCATTTCGTTCAGGACTCTGCGGATGAGAGCCCGCGATTTCGGGGGGTCGAGCGCGGCCATGTTGAGACGCCGGAACAGGGCGGCGAATCGCTCCGTGTCGCCGGGCTCC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3239-3815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010001039.1 Streptomyces sp. SID11385 contig-20000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3239 30 96.7 31 .............................C GTTCGGCCGGGGTGAGCGGGACGCGGCTGGA 3300 30 100.0 31 .............................. GGTAGGGGCGGGGCCAGTGCGCGTCTGCGTC 3361 30 100.0 31 .............................. AGTATGGCGAGTCCTTGCCCAGCAGGTAAAT 3422 30 96.7 31 .............................C TCCGATCCCGTCCGGCAGTTGGGGCTGCCGA 3483 30 93.3 31 .........A...................C TCCCCGAGGTGCGGCTGCACGCCGACAGCTC 3544 30 100.0 31 .............................. ACTTCGGCGAGCGGCTCCTGGACCCCGCGAT 3605 30 100.0 31 .............................. GCGGCGGCTCAGCCGTCACGCGGCACCGTCC 3666 30 90.0 31 ..........T.................GA AGCTGTGGACGACCGAGGACCCCGAAGTGAA 3727 30 93.3 28 ..............C.A............. CCACCAGGCCGCCGACGGCGAGCGCGCT 3785 30 83.3 0 .G.T.........C........C...T... | T [3810] ========== ====== ====== ====== ============================== =============================== ================== 10 30 95.3 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : AACGCATCCGCCAACGGGCGGGAGGTGGCGGCCCGTGCGACCCCTGGCGCGTGACGCGGAACGGCTGCTGTACGAGGACACGGCGGTCCCGGGCCTCCGCGTCCGGAGCTGGTGCCTGATGTGCGGGACGTACTCGCCGGAGGGGGTGACCGCGGACTCGGTACGGACATGGTGCCTGGAGCACAACCGGACGACGGGGCACGCGAGTTACCGGGTGGCGGAGACGCAGTACTTGGTGGTGACCCGGGAGGTGGGCGAGCCGGGGCGGTGCCGGTGCGGGCGGGGCGAGCCGGAAGGCTGAGGGGGAGTGGGGGGCTGATCCGGTAGCGGGGGTGTCGCTGGTGGCGGGGGAGCCGTGGCGCGCCGGAGCGGGGTGCCCGGGGACTACGCTTCGAGCGGTCCGCGCCTTACCTTCCTGGATCGCTACGCCCGAAAGGTCCGGGTCTTTGATCCTTGCGCAACGGAGGCCACGCGCCGACTAAACCTGCTGGTCACGGAGC # Right flank : GCTCGGCTACGCGTTGTCCCCGGTCGTGGCCCCCACGTCCTGCCCGCCCCCGCAACCGGTGCGTACTTCCGGTTGCCTTCGGGCAGGAACACCCTCGTTGATGTCCGCCCGTCTTCGGGAGCCGCCGTGGTCTCCGTCTCCTCCCCTCCCATTGACACCCTTGTTCTCGGTGCCGGTGTTGTCGGTGCCTCACTCGCGCATCAGCTCGGGGTGCTCGGGCTCGGGGCAGGGGTCACCGTGGTGGACCGGCGTCCGCCGGGGCGGCATCCCGGGTCCAGTGGGCACGCTCCTGGGTTTGTGGGGCAGCTTTCGCGTACGCCTGAACTCGCCTTGCTCGCACGGGAGTCCGTGCGGCAGTACGTCGGGTTCGGGGAGAGCGTCTTTCGGCAGGTCGGGGGGCTTTCGCTGGCCACCGATCCGACGCAGCTCGGCCAGCTTGCTCAAGACGCCTAGCACGCCGCCCGGTTAGGGATTGACGCCCACCTTGTCGATCCTGAGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6058-7489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010001039.1 Streptomyces sp. SID11385 contig-20000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6058 30 96.7 31 .............................G CGATGTTGAGGGTGGTGTGCGAGGCCCCGGG 6119 30 96.7 31 .............................T CCTCAAGGCCCCGCGCCGTCTCCCCCCACAG 6180 30 96.7 31 .............................G TGAAGCTGGAGCAGCTGCCGCCGCTCGCGGG 6241 30 96.7 31 .............................A TCGGGCCGTTACGAGGCGCGGAACTTGACGA 6302 30 96.7 31 .............................G TCCTGGCCGCCGCCCACAGCGCGCCCGGACG 6363 30 100.0 31 .............................. TCGGCCTGCGCCCTCAACTGCTCTGCTTTGG 6424 30 96.7 31 .............................G GCGGCCGACGTTCTGCGCACGTTCGCGACCG 6485 30 96.7 31 .............................G GAATTGCCTTCAGCCGTGGTGGTGGTCCCGC 6546 30 100.0 31 .............................. CGAGCTGGAAGGCCAGCTCGCTGCTGGTCGA 6607 30 96.7 31 .............................A CCCAGTGGCAGGAGCGGAGCGGCAAGGTGCT 6668 30 96.7 31 ............................G. CCTCCTGCTACATGTGCGGGGATTCCTTCTG 6729 30 96.7 31 .............................T CCTGCCCGCTGCCCCGGTGCGCGGCGACGAA 6790 30 100.0 31 .............................. ACCCACCGTGCTCGGGCAGATGATTTCCGTC 6851 30 100.0 31 .............................. GCACTGCCTCCCATTCGCTGCGACGAACGTG 6912 30 93.3 31 .........................G...G AGGCCGACACCCTCACAGACGATCCGTGGGC 6973 30 96.7 31 ...T.......................... GCGCCGCCCCGCTCCCCGGCCCAGCGCTCCG 7034 30 93.3 31 ...T.........................T TGCGGGTTTCAGAGGGTGGTGGTCGGGTCGA 7095 30 96.7 31 ...T.......................... TCCACATGACGCCCGAAGCAGCGGAGGAGAG 7156 30 93.3 31 ...T.........................G TCACGGCGACGACTGCGGCCTGCCCCGCGAG 7217 30 90.0 31 ...T......T..................G CCTCGGCCTGCTCCAGGTGCTGGATCGCGAT 7278 30 96.7 31 ...T.......................... GCCGGTCCCCAGCGCGGTGGCGGCCGCGCGG 7339 28 86.7 31 ...T........--...............A AGAAGTCGACGAAGGCGCAGCGGGCGGCAGC 7398 30 100.0 31 .............................. ACCGCCAGGTGGACTTCCGCCCGGATCGGTA G [7415] 7460 30 86.7 0 .............C...C.......C...T | ========== ====== ====== ====== ============================== =============================== ================== 24 30 95.9 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Left flank : GTCGACGTGATGCGGGCTGCCGTGGTTGCGCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCGGGGAACCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGGTCGAATTCGGACCCGAGCATCGCGGAGCCGGGCGTCCCGCATCACCCGGAGATTTTCGAGGCCATCGAGCGGCGTGATGCGGACTTGGCGGTGGAGCGGATGCGGGCGCACCTGCGGCTCGGGCTGCGGACGTACGGGCGGGACTTGGACGTCCAGGTGGACGTGATGGCGAAGCAGCACATCGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGGGGGGACGGGGGTTCGGCCGCTATGGGTTGTATGCCGGATATGGCGGGTATGCCGGAATCCGCGATTGTTGCGCGAACGGGGCTGGGACGGGGGTAAACCCGCAGGTCGGAAAGG # Right flank : TTCTCGTCGCGGCCCCTGGTGCGACTCACCGACCCCGGGCAGTGGTTCCCGCTGAACTCGGTTGCGAACACCGCACGTACAGCGCTACCCGATCGCGAGGGCCCGTGCCGAGGGGCGCAGGGCCGGGTTCGTGGTGAGGCATGCGGTGATGATCTCCTCGAACTCGGGGAACGACCAGGGCCGTTCGGCGGCGAGGTCGAGTGCGTCGCCGCTCGCGATGCGGCCGAGCTTGTCGTTGAAGGGGGCGTCGCTCTCGTACCGGATGGGGCGGCGGCCGGTCCAGCACCAGAACAGCGACGCGCCGAGTCCCCAGACATCGGAGGGAGGGGCGGCCTGGACGTGGTGGTCATCCGCCGTGGCGAGGAGCCGGCCGGCGACCTCTGGGGCCAGGGTGTGGACGAGGGCGCCCCGGTAGGGCAGGCGGAGGGGATCGGCGGGGCCGCAGGCGAGGGCGTAGTCGATGACGGTGGCGGTCCCCGTGCCGGTGATGAGGGTGTTCG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25172-27149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010001055.1 Streptomyces sp. SID11385 contig-1000033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25172 28 100.0 33 ............................ CCATCCCCATGTTGGACATGACCGTCAGCGCTG 25233 28 100.0 33 ............................ CCTCAGCCGCGTCATGCCGACGAACGGCGACAA 25294 28 100.0 33 ............................ CGGAGAAGAGGACGGCGCCAGCGGTGATGGTCC 25355 28 100.0 33 ............................ CCCGATCGCCAACGCCAGCTCCCACACCTCCCC 25416 28 100.0 33 ............................ CCTCGGCGCTGACGTCGTGTACCTCGGGCCGGA 25477 28 100.0 33 ............................ CTCCACAGAGAACGAACCGCACCCAGTACAGAG 25538 28 100.0 33 ............................ CCCGATACCGCCCTCTGGTCGGTCGTGCGAGGC 25599 28 100.0 33 ............................ CGACGTCGTGCCCGCGGCGGCGCAGGCGCCGGG 25660 28 100.0 33 ............................ CCCCGGCACGTCGCACATGATGCTGTGGGACGT 25721 28 100.0 33 ............................ CCCGCTACACCGCAGACGTGATCGCCCTCGACA 25782 28 100.0 33 ............................ CTCCATCACGACCACGGAGAAGATGATGCGGAC 25843 28 100.0 33 ............................ CAGGGCCATCACGTTGCGCGCGCTGACCGAGGC 25904 28 100.0 33 ............................ CGGCGTCGCATCACAGCCGCGCGGATTCGGACG 25965 27 96.4 33 ....-....................... CACGGCGTAGGCGCTGACGGTTCCCGCGTTCAG 26025 28 100.0 33 ............................ CGACCCTGATCTATCTCATCGTCTCGCTGGTGA 26086 28 100.0 33 ............................ TGCGCTGGGCCTCGATGCGGCGGGCGGTGCGGT 26147 28 100.0 33 ............................ CACCCCATGTACCACCACGGTAAGGCCACCAAG 26208 28 100.0 33 ............................ TGCGCGGCGGTAGCCCTGGTAGAGGTCTTCCCA 26269 28 100.0 33 ............................ CAGCGGGTCGCGGCGGGTGAGGGCGAGGTTGCG 26330 28 100.0 33 ............................ CGGTGAAGCGCTGGCGGCGCGAACTGGAGAACC 26391 28 100.0 33 ............................ CGCTCAGACCCTCCGGGGGCCCGAACACGATCA 26452 28 100.0 33 ............................ TGCTCAATCGGCCCTTCCTCGTCGTGAAACGTC 26513 28 100.0 33 ............................ CCCGATCGAAGGTATGAGGTTTCCATGTCCTTG 26574 28 100.0 33 ............................ CCTCTGCATCTGCCCCTGGCCCGCATCGAAGAC 26635 28 100.0 33 ............................ CGGCCGCTGGCTCCCCCGCATCCCCCGCCCCCG 26696 28 100.0 33 ............................ CAGCACCAGCTCCGTCAGGTCGAAAGCCGCGAG 26757 28 100.0 33 ............................ CCGCGGCAGCGGGTCGGCGAGCAGACGCGCCAG 26818 28 100.0 33 ............................ CGGGGCCGAGATGAAGACGAAACCGCCGCGCGA 26879 28 100.0 33 ............................ CGGTTGTGAAGCCGGGCCCGCCGGACTGGCAGC 26940 28 96.4 32 .........................A.. CAAAACGGCACCACGCCGTGGGCGCCGGCGGC 27000 28 100.0 33 ............................ CGACCTGATCCGGCGACAGGCCGGACACATCTA 27061 28 92.9 33 ................G.T......... CCGGACTACGTCGACCTCATCCGGGCGCTCGGC 27122 28 71.4 0 A.A.....T....TC...A...C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.7 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : GACTCCGAACAGGGCTACGCCTTCCGCACCCACGACCACAAGTGGCATCCAGTCGACCACGAGGGCCTGACCCTCATCTTCCGCCCTTCAGGCCGCTCCCTGCCTGCACCCGCGGCGGCCTCCAAGGGATGGAGTAAAGCTTCCAAGCGCCGCCGATTCGGCAACAAGCCGTAGCTGACACGACCGATCGCGGCTCTTCGCCGCTGGCCGGAGGCCCGGCGCATTTGCGCGGCGGCGCCTGATCGCATCGGAGCACCTGCGCGCCGCAACGGCCCGCGTATGGCGCCTGGCGTCACGCCCAAGCCGGGAGGAACCGAACCAGGCGGCGTTATCGGTGAGCCGAGCGGAGCGCACCGGGCAGGTGGCTCGACGCGAGTGTCTCGCGTATGGCTGGTGGAGGCGCTCCGGGACCCCGAGAGCCCTGATTATTCTATATGTCCGTTTCTCTCATCCTTGCTCCACGAGGCACCGCACCTTGATAAAAGCCCAGCTCACAAAGA # Right flank : CCGAGACTGCCCTCACCGCTTCCCGGCTTTGGCCTGCCAGGTGGCTCCGGCATTTGCCCGAACGGTGTTTGCTCATAATCGTGGTGACGAAGCGTTGGTGCGTTGCATCGTGTCCGTCGAACAGCACCTGGTGTATCTGCCTCGCGCTCCCGCTACTTGCCTGCAACTTCCTGCTTCCCCGCCCACTCCCGGTCCAGGATGGCGTGGACGATGGAGTCGCGCCACTGGCCAGCCTTCTGGATGTGCTCGCGGATGCGGCCCTCCTCAACCATTCCCGCCTTGTTCATGGTGGCGGCGCTCGCCTCGTTGGCGGGGGAGCGGGCGCCCCACACGCGGTGCAGGGACAAAGGGCCAAACGCGAGGCCGAGGAGCGCTCGGACGGTGGCGGTGCCGTAGCCCTGGCCCCAGGTGTCGGGGCGGAGGGCGAAGCCCATGGTGGCGCCGCGTGTCTGGTGGGGGTCGAGGGCGAGCCGGCCGAAGCCGATGAGCTGGCTGTCGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11782-10162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010000817.1 Streptomyces sp. SID11385 contig-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11781 30 100.0 38 .............................. TCCGGGTTCGAGCGACCCTGTCCACACTCCCTGCTAAC 11713 30 100.0 37 .............................. AGCTGGTGCGGGTGGTGGTGGCCGAGCGGGTCGCGTG 11646 30 100.0 37 .............................. TGAGTGAAACGACGCTGGCTGTGCACGCTGCACGCGA 11579 30 100.0 35 .............................. GCCTCGGTCCCTGGCGAGGTGCTGATACTGCCGGT 11514 30 100.0 39 .............................. ATGAGGTAGGGGGTCCCCTCGGGCTTTGCGGTTTCCCGG 11445 30 100.0 35 .............................. CGCCCGTCCCCCGCCGTCACCCGTTCTCCCGCGAG 11380 30 100.0 37 .............................. CGGCAAGAACCGGATGGACCTGCGCATGGTCCTGCAC 11313 30 100.0 37 .............................. CTCTCGTCGTCAAGGAGTTGCCGCTCCGCCTGACCCA 11246 30 96.7 39 ....G......................... CCGAAGCACTCCTCGTAGAGCACGACGACCGGCTTGCGC 11177 30 100.0 35 .............................. AGGTCTCCGACCACCGTGACCTCCCCATCCAGCGC 11112 30 100.0 37 .............................. CCCGGCGCCGGAACGTTCGATGCGGTCGTCGCCCGGG 11045 30 100.0 36 .............................. CCTTCATGACGGGCGACCACGGGACGGCGACCCGCT 10979 30 100.0 35 .............................. CGGACCTGGAGCGCGTGCAGCGCGTCCAGGAGGCG 10914 30 100.0 37 .............................. ACGACGGCGCCCGCGTGCGCCGGGTGGGCGCCGAGGA 10847 30 100.0 35 .............................. ATGGGCCAGGCGGCAGGGTCCGCGCGCAGCGTCCA 10782 30 96.7 35 ...........T.................. GTCGCGAGCACGCCATCGAGCCGCGAGTCGCCGTA 10717 30 100.0 37 .............................. ATGACCGCGTGGGTGACGCCGATCCATGCGAGCGCGA G [10694] 10649 28 93.3 36 ..............-.......-....... TACGGGGCCGTGAAGGCCGGAGCGGGCCCGAGGCGG 10585 30 93.3 36 ....................C....T.... ATGTCGCGCATCGCGTCCTCGGACGGCAGCAGCCGC 10519 30 90.0 36 ....................AA...G.... ATGACCTGAAGCGGGTGGTACGAGGGCCTCAAGGGG 10453 30 90.0 34 ...........T.....T.......G.... CAGCGGGACGGCATCAGCAGCATCCGCGTCCGCC 10389 30 86.7 37 ........T...T....T.......G.... CGGAGGTCAATGCCGGAACGGGACTCCAGCCAGGCGG 10322 30 93.3 36 A........................G.... AGCGCGTACAGCACAAGGACGCGGTCGAAGGGCCGC 10256 30 80.0 35 ..........TT....AA.......G.G.. TACTCGCTGGTGGTGTCGGCGTCGAGCGAGAACGA 10191 30 76.7 0 .........T..T.TG.G.A.....G.... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 95.9 36 GTCCTCATCGCCCCCAGCGGGGGTCACAAC # Left flank : CGCTGGTGTGCCGCTACCCAGGCCGCCCGCGAGGTGTTCCACAACGCGTTCCTGACCTTCACCCAGCCCTTCGAGGACCGCACCGGCCTCGCCGAAGCCTTCGACCGCCAGTTCGACGGCATCGAAGCCGTGCTCCAGGAGGACCTCGCGGAATACGAGAAGCTGCTGACGACTGCCGATACGCGCAGCACCGGCCGTCTCCAAGCCGATCGTTACCTTGTCCCTCTCCCGCAATGGGCCGCCTCGGCTGCCCGCTTCGACAAGCGCCTTGGCGTCCACATCCTCAACGCCGACTACGACCCCGAACTCGGCCTCGTGTCGATCAACCACGACACGCGGCGCACCTACCAGGCAGGCGAAGTCCTCTGAAGGCCGACGCGGCTCTCCCCGCAGGGGAATTTCAGCGCCACGCCGGACTCGGCAGCACAACCGCCGGTCCGCTGAAAAATCGGCCCCGACAGACCATGACGGACATCGGTCTGCCTGCGGCTTTACCGTGG # Right flank : CCGGACCGCTACCGCGACGGTGCCCGTGACCGCCATGTCCTCAACGGCGTCGGCCGACATCGCAACTGTCCGGGAAAACCGTCACCGAGCGAGGCCCGAACGCCCTCGTGGACTGAGACATCCTCCATTTCCGCAGCTCACCCCGTGATGGGTGAACAAGCCTTGACCGACGTGACGAGGGTCCCCAGGCGGAGGTGGGTGGTGGCCGTGGCGGCGGCGGTCAGGGTGGGGAGGGCGCCGAACCAGGGGCCGTCGCGGAAGGTGCGCCAGGAGAGGTGGTCGTAGGTGTACGCGGCGTGAAAGCCGAGTTCCTCGGCGCGCACCCACTGGGCGCGACCCCCTTGCGACCAGCGGTTCACGGGGAGAATCACAGTGCTCAGACGCATGCGACGACTCTACGAGGCAGGTCGGGCGTCCGGCCGCAGGCCCCGTGGGAAGCCGTTCCGACGCTCCTCCGGGGCCGCCCGCCGCCGCGATGTTTCACGTGAAACATCCCCGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCCAGCGGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 21034-23312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLR010000817.1 Streptomyces sp. SID11385 contig-25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 21034 30 100.0 36 .............................. GTGCGTCCTCGACGCCGAAGACCGCGCCGAAGACGC 21100 30 100.0 39 .............................. GACACGGGGAGCTCCTCCGGGACATCCTGCGGAGGAACC 21169 30 100.0 38 .............................. GGCGTGGGCGGTCGGTGGGACCGGCCGGAGGCCGCAGC 21237 30 70.0 20 ............A.GG.TA....G...GCT CGGCCACCTCGGTCAGCGCC C [21256] Deletion [21287] 21288 30 100.0 36 .............................. GTGCGTCCTCGACGCCGAAGACCGCGCCGAAGACGC 21354 30 100.0 39 .............................. GACACGGGGAGCTCCTCCGGGACATCCTGCGGAGGAACC 21423 30 100.0 38 .............................. GGCGTGGGCGGTCGGTGGGACCGGCCGGAGGCCGCAGC 21491 30 100.0 34 .............................. GCCGCTGCGGCGTGCCGGGGCCGGGCGAGGCGGA 21555 30 100.0 35 .............................. GTGAGGGTCAGGGTCTCGGTTGCCACAGCGGGCCT 21620 30 100.0 36 .............................. CAGAAAGCCTTCGCGGAGCGGGCCACGAAGAAGCGG 21686 30 100.0 35 .............................. ACGCCGAGGGTCCCGCCCTCCTGCGTGATCCACCC 21751 30 100.0 37 .............................. AGGAGATACCGCGCGACTCACTGTCCGGCGGCCGGCC 21818 30 100.0 38 .............................. TCCGGCGGGGCTCTCTTCGGCCCTCCAAACCCCACCAG 21886 30 100.0 37 .............................. GCGAGCTGCGCGCGGGCTCGCGCGAGTGGGGCCCGGA 21953 30 100.0 38 .............................. AGCAGCAGCTCGACGCGCACGCCGAGCGGGTCATCGGG 22021 30 100.0 36 .............................. ACCTGGAGGTAGCCGGGCCGGCCCACGGCCGCAGGG 22087 30 100.0 37 .............................. AAGAGGAGACCGCCGGTGTAGACGAGGTACTGATCGG 22154 30 96.7 36 ...A.......................... ATGTTCACGCGGGTGACCGCGGCGGTGTAGGCGCGG 22220 30 100.0 35 .............................. GGATGTTCGTCGGGAAGCTGGACGGGGCGTTCACG 22285 30 100.0 36 .............................. TAGGCCGGTTTGCTGCCCGAGCCGGGGTTGGCGGGG 22351 30 100.0 37 .............................. TGCTACTGGTCACGAGGTGCCCCCTCGCCCGCCGGGG 22418 29 96.7 39 ..........-................... TCCGCTTGCTCGGCGAGCATCCGGGCCCGGTCCACGAGG 22486 30 100.0 38 .............................. ATGGTCTTCGACAGGACCGCGTACCGAGGCGTCGCGCG 22554 30 100.0 38 .............................. ACGATCAGCACGACCTACACGCGCGGCATCAAGCCCGG 22622 30 100.0 35 .............................. ACCTGCACTGGAAGCAGTGGCCCGACCGGGCCGCG 22687 30 100.0 36 .............................. GTCCAGATGCACAGGCGCGGGGTGATGTCGACAGCG 22753 30 93.3 37 .....................A..G..... AGGACCAGCTCACCGACGTCCGCGACGACATCCAGCA 22820 29 93.3 36 ..........-.............G..... AGCGGGGGCAGCAGGACCGCACCTCTCCACCCTGCA 22885 30 96.7 36 ........................G..... GTCGTACGCACCCCGTATCGCAGCGCGTCGCACGAA 22951 30 96.7 36 ........................G..... GTCGTACGCACCCCGTATCGCAGCGCGTCGCACGAA 23017 30 96.7 37 ........................G..... ACGAGCGCGTCGGCGCGCGCCTGCCAGGCGCCGCGCA 23084 30 100.0 36 .............................. CGCCGGGGGAGCCGCTGCGATGACTGCTCCCCGCCG 23150 30 100.0 36 .............................. CAGCCAGCTGTCTTTTCCCACCCCGGACGGTCCGCT 23216 29 86.7 37 ........AA........-....C...... CCCGCCACGACCCAGCGAGCTTCCTCGCCGAGGTCGA 23282 30 90.0 0 .......C.............C..T..... | C [23292] ========== ====== ====== ====== ============================== ======================================= ================== 35 30 97.6 36 GTCCTCATCGCCCCCAGCGGGGGTAGCAAC # Left flank : CTGCCTCGAAGGCACTCCCTACAAGCCCTTCCGCATCTGGTGGTGACCTCGGTCCATGCACGTCATCGTCGTCTACGACACCGCCGCCGAACGCAACTCCCGCATCCTGCGCACCTGCCGCAAATACCTGCACCACACCCAACGCAGCGTCTTCGAGGGCCAGCTCACCCCCGCACAACTTCGAGCCTTCCAAGCAGCCGTCGAGACGGTTCTCGACCTGACCTACGACAACGTGATCGTCTACACGTTCCCCCCGGGCACCAGTCCCGTCCGCCACGCCTGGGGCGCCACCGAGCCCGAGCCCACGGACGTGCTGTGACGGGCGTCGTGGAGCCTTGGCTTCTTGGGTGGAGCGCAAGCGTGGAGGGCGACTTTCGGAACACCGGCCGACCTCGATTTCAGCGGCGCACCGGGCCGGAGAACGCAACCGACGGTCTGCTGAAAAACAGAGCATGTATCGCCCTCCGCTGGAGCCTCGGACCAGCGGCTTTACTCTGGGC # Right flank : CCATCGAGGGTCCCGCGGAAGGGGGCCATCACGGCCATGATCACTTCAGCTGAGCGAGCGCCTCCGTAGCGATCCGCTCGAAGACCGTCTGGTCCACGGCGAAGTCCGAGTCCGGGATCGGCCAGTGGATCGCGATCTCCGTGAAGCCGAGTTCTTGGTGGCGGCCCGCGAAGTCGACGAACGCGTCGAGCGAGGCCAGCGGTCCGTTGCGGTCGGGGGTGAAGCCGTGGAGGAGGATCTTGTCGAGGGCGGCGATGTCGCGGCCTGCGGCCTCGCACGCCGCGCCGAGGCGGGCGATCTGGCTGCGGAGGGCCTCCAGCGACTGCTCCGGTGTGCCCTCCTCGTAGAGCTTCGGGTCGCCGGTCGTGACCCATGCCTGGCCGTAGCGGGCTGCCAGCTTCAGGCCGCGTGGGCCGGTTGCCGCGACCGCGAAGGGCAGGCGGGGGCGCTGGACGCAGCCGGGGATGTTGCGGGCCTCCTCGGCCGAGTAGAACGTGCCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCCAGCGGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //