Array 1 4704-5333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSO01000005.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4704 28 100.0 32 ............................ ACACTCGCCGGGCGTGCGCCGACTTGAACCAG 4764 28 100.0 33 ............................ AGCGACGAGAGCGCCCAGGTCATCCGCCTGCAC 4825 28 100.0 32 ............................ ACACCGAGCGCGGGCATGAGCAAGAGCCCATC 4885 28 100.0 32 ............................ CGGGCCAGGTGGCTGACCAGGATCTCGCTGGT 4945 28 100.0 32 ............................ TTTCTGACTGTCCGCGCGCACTCTGGGAGCTA 5005 28 100.0 32 ............................ ACGTGAAGTGCAGCAAGATCCGGCAGGCGCAG 5065 28 100.0 32 ............................ ACACCGACAGTCGTGTCGATGCTGAGGCGAAG 5125 28 100.0 32 ............................ ATCTGCCCAGGGGAAATCGGGCGGGAAGAGAG 5185 28 100.0 32 ............................ ACTTCTGCCCACAGCTGCTGCACGTCGATGCC 5245 28 100.0 32 ............................ TGGCGGCCAGCGTCCTCGAGGGGGTGGGGAAC 5305 28 82.1 0 ......................G.CTTC | C [5325] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAATGTCCTCGCCATGACTTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTT # Right flank : CCCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTGACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGACCTGCGCGGTCTGCCGGCCGACCAGTCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16504-15936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSO01000076.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16503 28 100.0 32 ............................ TGGAGCTGCCGCAGGATTCCAGGCCTGTTTTT 16443 28 100.0 32 ............................ GTCTGGCCTTCCTTGGGCTCGGCTGGAAGGAT 16383 28 100.0 32 ............................ ATTCTGCTGGGAGGGAATATCGGCGCTGTCGA 16323 28 100.0 32 ............................ TTCTGCATCTGATTCAGTCGACCGATGTGCTT 16263 28 100.0 32 ............................ TGGACCGTCAGCATTGGCACGGACGGCCCACC 16203 28 100.0 32 ............................ AGGCGCTGCTGCTAACGATGCTCGGCCTGGCC 16143 28 96.4 32 .C.......................... GCACCGTCGCCGCCGTGGAACTTGTCCACCAG 16083 28 100.0 32 ............................ AGTACGAAGCCGCCATGGCCGAGTGCTGGTAC 16023 28 100.0 32 ............................ AAAAGAGGGGCGCGATAGGTGCGACATTCCGG 15963 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTATCCTGACGCGGCGGGAAAGGCTCGAAAAAAGAGGGTTTCAGGCCGGGAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCT # Right flank : AACGGAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38890-39698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSO01000106.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38890 28 100.0 32 ............................ GTCATCGGCCATCGCTGGATCGGCATGGGCCG 38950 28 100.0 32 ............................ ATGCAGGTCGCCGGTTCGACCCCGGCCTCATT 39010 28 100.0 32 ............................ ACGCCCCGGTCCGCCGGGGCCAACAACGGCGA 39070 28 100.0 33 ............................ AGAACACCCACCCGATCACGCTGATGCCACCGT 39131 28 100.0 32 ............................ TCCTGCGCATCGGCCGCGTCCATCACCTGGTC 39191 28 100.0 32 ............................ AACGCACGTTGCCGGTTTCGTCTGCCAGAAAG 39251 28 100.0 32 ............................ ATGACCATCACCATAGACCTGAAAGAGGCCGC 39311 28 100.0 32 ............................ GTCAAGGACCAGCTCAACCGGGGGCGCCTGAA 39371 28 100.0 32 ............................ CCTCTCTCGACTCCATGCGCCAGCACTCCCCG 39431 28 100.0 32 ............................ AACACCTGGTCGACGTGCTGCCGGGTCTTCCC 39491 28 100.0 32 ............................ GAGCAGGCAGAGGCGGAGCGGCCGGAGGTTGT 39551 28 100.0 32 ............................ TCGGTGATGCCCCGGCGAACCGGGGCGGAATG 39611 28 100.0 32 ............................ AGACCGGAGTTAGACGGGAGTTATGTCTATGG 39671 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21259-21886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSO01000018.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21259 28 100.0 32 ............................ GTGCGCTCGCCCGGCATGGCGTACTGGACTCG 21319 28 100.0 32 ............................ AAGCAACCGTGCCGTCAGCCTCGATACAGACC 21379 28 100.0 32 ............................ ATATCCGGAGCGTAGGCGGGGACGGGCAGGGC 21439 28 100.0 32 ............................ TGTTTCAGCGACGGAATAATCACGTGCTCGAC 21499 28 100.0 32 ............................ ACCGGCGTGACCATGATGACGATGGCCTGGAA 21559 28 100.0 32 ............................ AATGCGATCAGCGACGACCCGACCCTGAATCG 21619 28 100.0 32 ............................ GGCTGCGACGAGCTCGAGGCGGCCTTGCAGGT 21679 28 100.0 32 ............................ ATCCTCCCAAGCTCGCAACCAGCGAACAGCAG 21739 28 100.0 32 ............................ GGAATGCAGTTGCCCGAGCGGCGGCGCCTCCC 21799 28 100.0 32 ............................ TGGAAATCCTCCGCCTCCGGCGCCACCACAAT 21859 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAACGTCCCCCCGCTTCATCCCGCTGCTGCCCGCCTCGCAGGCCAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGGTCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //