Array 1 455-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUJ01000042.1 Salmonella enterica subsp. enterica serovar Ohio strain CVM N29382 N29382_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 454 27 93.1 32 --........................... TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 395 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 334 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 273 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 212 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 151 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 90 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31366-30420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUJ01000040.1 Salmonella enterica subsp. enterica serovar Ohio strain CVM N29382 N29382_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31365 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 31304 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 31243 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 31181 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 31120 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 31059 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 30998 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 30937 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 30876 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 30815 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 30754 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 30693 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 30632 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 30571 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 30510 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 30449 29 96.6 0 ............T................ | A [30422] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17673-16301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUJ01000043.1 Salmonella enterica subsp. enterica serovar Ohio strain CVM N29382 N29382_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17672 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 17611 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 17550 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 17489 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 17428 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 17367 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 17306 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 17245 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 17184 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 17123 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 17062 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17001 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16940 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16878 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16817 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16756 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16695 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 16634 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 16573 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 16512 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16451 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16390 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 16329 28 93.1 0 ............T............-... | G [16309] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //