Array 1 15999-9742 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGOK01000008.1 Marinomonas shanghaiensis strain DSL-35 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15998 29 100.0 32 ............................. CACTGCAGCTTGGTGAATGGCGAGCGACCGCA 15937 29 100.0 32 ............................. GTCGGGATATATCGGAACGGGTCACGACGGCA 15876 29 100.0 32 ............................. AAGATTGCAGAAGGTGGGTTTGATCAGTTTGA 15815 29 100.0 32 ............................. CGCGATGTCTATTTCGATAAACGGCTCAAGTA 15754 29 100.0 32 ............................. CTGGAGCCTTATTTGGCTTCACTGTCTCTGTC 15693 29 100.0 32 ............................. TGCTTTATCAGAAGCGGGTTTCTTCGGACCTA 15632 29 100.0 32 ............................. CTGGAGCCTTATTTGGCTTCACTGTCTCTGTC 15571 29 100.0 32 ............................. TGCTTTATCAGAAGCGGGTTTCTTCGGACCGT 15510 29 100.0 32 ............................. TTTGGGTTGTGCCCAGACTGCAACAACAACAG 15449 29 100.0 32 ............................. GAATGATTTTGAACACTATCACGTTACGTCCC 15388 29 100.0 32 ............................. TAGTTCCAGACGTAAAAACTTACCGTGACTTC 15327 29 100.0 32 ............................. TTGTTGATGTGAACGGATTAAACGTGGAGTTA 15266 29 100.0 32 ............................. AGTAATGACGACGGGGTGAAGTTGGAAACGTG 15205 29 100.0 32 ............................. ATCAGAAAAGAACGTCGGGACCAGGCGTTATG 15144 29 100.0 32 ............................. TAATGCCGGACAAACTCTGCACCGCTTATGGT 15083 29 100.0 32 ............................. TCATTGAGAAGTAATTACAACGCGACGAGGAC 15022 29 100.0 32 ............................. TAATCATGAATGTCAGCGTATGAGTCAAGTAA 14961 29 100.0 32 ............................. TACGGTAAGACCACAATCCTTGCAGGACTCAA 14900 29 100.0 32 ............................. TAGCCTTTCTCAGTCTTAATGAGATAAGAATC 14839 29 100.0 33 ............................. TGTGATACTTGTAGAGATAGTCGATTTAAAGGT 14777 29 100.0 32 ............................. TAAACACATCATCACCGTCATTGTCAGACTTA 14716 29 100.0 32 ............................. TAATTTCATATTACACCAGTAAAATTAAATTA 14655 29 100.0 32 ............................. TCAATGAACAAACCCTTAAACTCAAGGACTTG 14594 29 100.0 32 ............................. CCTGCGCTCTAACGGTCTCCCAAGCTGGAGCC 14533 29 100.0 32 ............................. CAATCGCACTGCTGTGCCGCAGATAGGTACCA 14472 29 100.0 32 ............................. TTCGACCCAAACTCACTGGAGCGAGCTAAAGT 14411 29 100.0 32 ............................. TGCGCACGCTGGATAGAATCGTTGATCATGTC 14350 29 100.0 32 ............................. CGCGCCGCCATGTTGAAAATGTGCTGAAGCAG 14289 29 100.0 32 ............................. GTATTTTCATTATGATTTTCAATAAACAAAAA 14228 29 100.0 32 ............................. GGGATAGAAACAGCCTCACCTTTTTGAGGCCT 14167 29 100.0 32 ............................. GGGCGCGAACCCTACCTAATCCCTGCCACTTG 14106 29 100.0 32 ............................. TTCTTCGATGGCCGCTTTCAAAGCAGCTCGAA 14045 29 100.0 32 ............................. TCGCATATTAGCAAATTCCTGATTAACCTTTT 13984 29 100.0 32 ............................. AATGTTTCCATAAACATGTTGTCCATGATTGG 13923 29 100.0 32 ............................. CGGGTTATTTTGCGACTCCGTTTATTGCTCAT 13862 29 100.0 32 ............................. ATTTTGGCAATTTGCCTGTTCTTAATGAGGAA 13801 29 100.0 32 ............................. CTGAAATTCAGCGTTCGAGTTTTGATCGTTCG 13740 29 100.0 32 ............................. CGATTAATAACAATATTTCGAACGTGGAAGTA 13679 29 100.0 33 ............................. CCAAGTATATCATCCTGCGATAGGTCGCTTTTG 13617 29 100.0 32 ............................. TTAGAGGCTATATTTTGTTCATGCTCTGAGAG 13556 29 100.0 32 ............................. CAATGGCCTGCTTACGGGTCGGATATAGAAGA 13495 29 100.0 32 ............................. TACAGCATTTTAAATGTTGAAATTCCGTAATG 13434 29 100.0 32 ............................. CTGGTTTGGGATGCATTTGGAAAACTGGAGAG 13373 29 100.0 32 ............................. ACATCAGACAACAAAATATGTTGACGACCACA 13312 29 100.0 32 ............................. GCGACTACTCATTATTTGACGAATTAGTGAAT 13251 29 100.0 32 ............................. CATGGCTAACATTACTTTACCTGAACCAGCAG 13190 29 100.0 32 ............................. ATCTCTAATATACTTAGTATGAGTCTGACCAT 13129 29 100.0 32 ............................. AATTGGGTTCCACATATACCAGAGCCTTACAA 13068 29 100.0 32 ............................. CCGCTTAAAGGCAACGTCAAGAAGGCCAAAAC 13007 29 100.0 32 ............................. GCCGAAAAACTGACGGGCGCGGTAATGGATGC 12946 29 100.0 32 ............................. CATGGCGTTTAACAGTCAAAGCAGAAGCCAAC 12885 29 100.0 32 ............................. CTAACTTTCTGCCAAATGCCCGACTCCCTATC 12824 29 100.0 32 ............................. GCCGAAAAACTGACGGGCGCGGTAATGGATGC 12763 29 100.0 32 ............................. TAATGGCGTTTGACGCGGAACAACTGACACGC 12702 29 100.0 32 ............................. CATGGCGTTTAACAGTCAAAGCAGAAGCCAAA 12641 29 100.0 32 ............................. TAATGGCGTTTGACGCGGAACAACTGACAAGC 12580 29 100.0 32 ............................. TTATGGGTGCTGACGAGTCGCAGACCGATAGG 12519 29 100.0 32 ............................. AGACTCTCCAGTTCTAATGGATTCAGCCTTTA 12458 29 100.0 32 ............................. AAATTCTTATCTTGCTCCAAGTATCTCAAGAT 12397 29 100.0 32 ............................. CTGGAATGATTAAAGCCATGCAGGCGCAAAGC 12336 29 100.0 33 ............................. CGACCATGCCACGCGTGATTTTATTAAACGCCC 12274 29 100.0 32 ............................. ACGTACTTTGCCCCCAACGATTGGGCGCGCGG 12213 29 100.0 32 ............................. CGGGGTTTAACGGGGGGGTTTACCGTAAACTC 12152 29 100.0 32 ............................. CCGACGATAAACGGCAAACAAACGAGCGGGTT 12091 29 100.0 32 ............................. ATGATTCCCGCCTGCAGAAATCGTATGCAAAG 12030 29 100.0 33 ............................. GAGCTGATCTTTCTCAATGCCCGACTGCCCAGC 11968 29 100.0 32 ............................. CGATTCCAGTAGGTACGCCGCTTGATCATTTT 11907 29 100.0 32 ............................. GCCAAATCATCACGGTGCTGACCAACGGGGAT 11846 29 100.0 32 ............................. TAGCAATCCCAACCGTCACCAAATCTATGCCA 11785 29 100.0 32 ............................. TCTTTGAATGCGTTATTATCATTGGATCTAAA 11724 29 100.0 32 ............................. GGATTAAAACATGCGAATCTCGCGCAGCTTCA 11663 29 100.0 32 ............................. CTCTTAATGGGCTTTCTAGTCATTATGGTCTC 11602 29 100.0 32 ............................. CATTAATGATGATGTTTCATCTTTGGGTCTTG 11541 29 100.0 32 ............................. CCATTGATTTGTATATTAATTATTTTATTATC 11480 29 100.0 32 ............................. AAATTATTTCCAAAGAAAACTGGTTTGAGGAT 11419 29 100.0 32 ............................. GCCATTTACAGCGGGTCAGAAGGCGAAACAAG 11358 29 100.0 32 ............................. TCTTTTTATTCATCGCTTGCGTGTATTTAGTT 11297 29 100.0 32 ............................. CAATCCGAACGGATGAAACCCTTTTGGGGAGC 11236 29 100.0 32 ............................. CGCTGCTTGCTCGCAGAAATCAGCTAACGTAG 11175 29 100.0 32 ............................. TGATGTGCTGTTTGTAATGTACTCTTGCGAGT 11114 29 100.0 32 ............................. TACGTCTAGGCATGTTCGTAGTGACTAAGAGC 11053 29 100.0 32 ............................. GATTAAGCTCTTTTTTTGATCGAATCATCTTG 10992 29 100.0 32 ............................. ATCAAATTGCTTCAATACTAGGCTACATAGGA 10931 29 100.0 32 ............................. GCATCTCTTTTGGTGACGCATTACTTGATGAA 10870 29 100.0 32 ............................. CATGTGTTTGATCTTGCGAGGCGTCGAATGGT 10809 29 96.6 32 .................A........... GTCCTTGTGCATGGTTTGCGGTTCCCAATGTA 10748 29 100.0 33 ............................. CAAATAGAATGGATTGAGTGGGTTTGTTCGATG 10686 29 100.0 32 ............................. CCTCGTTATGCTTATTCAAGACATAAAAAAAC 10625 29 100.0 32 ............................. TTGGGATAGTAACTTTTCACGTCTCGTAATTG 10564 29 100.0 32 ............................. CGTCTTCAATTAATTTTTCAATTGCTTCGTGT 10503 29 100.0 32 ............................. CAAAGAAGGGTATTTAAACGCCACTTTATTTG 10442 29 100.0 32 ............................. CTTGGAAAGGGTCAGCAGCGACCACGGCAGAA 10381 29 100.0 32 ............................. AAAATCCGAGCGTTTCCGACCTAGCCATAGGC 10320 29 100.0 32 ............................. CGGACGCATTGAACACAGGTCATAACTCAGAA 10259 29 100.0 32 ............................. TTGACCAGCCTTTGTTTAGCATGAGTTTACGT 10198 29 100.0 32 ............................. CTAATCTCGCCTCCTCTTTAGTTATGCCTGTT 10137 29 96.6 32 ............................T CGCCAATTACATAGAAACCTTTATTGTATTTC 10076 29 93.1 32 ............CT............... GTTTTTTTATTGATCTGATACGTGGCGGTCAA 10015 29 93.1 32 ............CT............... GCATGAGCGTGAAAAGCCTTGCCGTTAAATTG 9954 29 89.7 32 ............CTT.............. AAAACGTCATACAGCTGCAGAACGAACTGATA 9893 29 93.1 33 ............CT............... TTTTGATATTACTGATTATGATGGCATTGATAC 9831 29 93.1 32 ............CT............... TCTTGAATACAAGTAGTCATTGATCGGGATAG 9770 29 93.1 0 ............CT............... | ========== ====== ====== ====== ============================= ================================= ================== 103 29 99.5 32 GCGTTCCCCACAGCCGTGGGGATTAACCG # Left flank : CTAATAGTGGTCATCGGAGCCATTAGAGGAGAAGTCTCATGAGCATGGTGGTAGTGGTAACGGAAAACGTACCAGACAGACTACGAGGGCGTTTAGCCATCTGGTTATTAGAGATTCGTGCGGGCGTTTATATTGGTAATACTTCACGCAAAATCCGTGAAATGATCTGGGAACAAATCAACGTATTAGCGGAACAAGGTAATGTTGTAATGGCTTGGGCGACCAATACCGAATCTGGTTTTGAATTCCAAACTTATGGTGAAAATCGGCGCATTCCCGTTGATTTAGATGGACTAAGGCTTGTCTCTTTTTTACCAAAAGATAGCTAACTAATTGATTTTAAATAAATTCTGGTGAAATGGTTTTTTAAGAAAAAGCTTTAAATAAAACCAATAAAAATCAAATAGTTACAGCTCTTTAAAAACTCAAAAAAGAGTAAAACTCTTGGTGGATTTTTTGTTAAAGAATTTTCCTTTGCAAAACAATCGTCTACACTAAGA # Right flank : CTGATGACAACGGTAATCGGAAATTGATCCAGCAAAGGAGTGGTCTCGCCAGTGGCACTCAAGCCGCCGTGTGGATTGAAGTATTAGTTGGTAGGTAATTAGGCGCTGGGTTGTTGTTCCGCCTCATAAGGTGATGGTTTATGCGTACAGTAACTGATGCTTATTTATTCTTTGTTTCTTGGATTTTAATTATGGCGAGTTCGCCACAGTTAAAATATCAGCAGACTGGGTCATTGTTTTTCAATGATGATTGAGCGGATAAACAGGAATGACGGGAGAATATTTCTGTCGTGGGATTGTGAGTATGAGGAGTTGGACTATCTATTGTTTTAATGTCATCGAATTCAATGATTTAGTTTTGGTCGTTAAGTCTGTTGTTGGCAGATTACGGTCGTGCCTCCCTCATGCTGCCCTACGGTGTGGTTGATGATGGCTTGGTGTGTTTTGGACGTAAAGGCCGCTGGCAGATTACGGTCGTGCCTCCCTTATGCTGCCCTACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACAGCCGTGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //