Array 1 987206-988698 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014983.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-2059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 987206 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 987267 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 987328 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 987389 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 987450 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 987511 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 987572 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 987633 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 987694 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 987755 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 987816 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 987877 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 987938 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 987999 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 988060 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 988121 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 988183 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 988244 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 988305 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 988366 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 988427 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 988488 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 988549 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 988610 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 988671 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1004830-1006672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014983.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-2059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1004830 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1004891 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1004952 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1005013 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1005074 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1005135 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1005196 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1005258 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1005319 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1005380 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1005441 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1005502 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1005563 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1005624 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1005685 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1005746 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1005807 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1005868 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1005929 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1005991 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1006094 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1006155 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1006216 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1006277 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1006338 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1006399 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1006460 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1006521 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1006582 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1006643 29 96.6 0 A............................ | A [1006669] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //