Array 1 665488-666508 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066702.1 Staphylococcus pseudintermedius strain HSP138 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    665488	    36	 100.0	    30	....................................	GGTTAAAATAGTTTTTTGAAGATTGAAAAT	
    665554	    36	 100.0	    29	....................................	CAATCAAGTGCAGATTTATCAAAAAAGTT 	
    665619	    36	 100.0	    29	....................................	ATTAATGGAAGCTGTTAAAGCTAGGATAC 	
    665684	    36	 100.0	    29	....................................	TCATTGTAAAAGAATCCTTGACGATAGCC 	
    665749	    36	 100.0	    30	....................................	ATCTTCACTTGTCATAACGTAAAGGTTTAC	
    665815	    36	 100.0	    30	....................................	TTGATATCAGAAATCAGAACATTCAAAAAA	
    665881	    36	 100.0	    30	....................................	AAAAATGCTTGGTCTTTACTGATTGAAGTT	
    665947	    36	 100.0	    29	....................................	AACTGTCAATAATACCCCCTACAAGATGT 	
    666012	    36	 100.0	    29	....................................	TGTACATTTAAACGATTTATTCGGTCAAG 	
    666077	    36	 100.0	    29	....................................	TTGTGAAGGAAAAATCGACTTCACGTTGG 	
    666142	    36	 100.0	    30	....................................	ACCGTTCCATAGCTACATGTCCGCTAATTG	
    666208	    36	 100.0	    30	....................................	CGTTAAGATTTGTTCAAAATCTTTTATTGC	
    666274	    36	 100.0	    30	....................................	AAATAGATGAGGAAACTTTTAATAGTATCA	
    666340	    36	 100.0	    30	....................................	GTAAACACTGTTTATCATGTTGAAGTGGCC	
    666406	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    666472	    35	  86.1	     0	.........T................-.CA.C....	|                             	TC [666505]
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.0	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCCGAAAACATTGTCATTCGCTGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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