Array 1 7399-3036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLZ010000002.1 Clostridium perfringens strain CP-40 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7398 29 100.0 38 ............................. AAATTCATTTAATTTTTCCTCCTTAATCATTTTTATTA 7331 29 100.0 36 ............................. ACATTCTCAAAAATGCCTAGAGGCTCTCAAGTATTA 7266 29 100.0 37 ............................. ACGTTGTGGAAAAATGCTTCCCAAGCTGTAAGCTACT 7200 29 100.0 37 ............................. TTGTCAACAACTTTTCCAGGTTGAGGAGTTTGTCTTC 7134 29 100.0 37 ............................. TAATAAGGCCTTTAATTGCTTCCTAGGAATGTTTTCC 7068 29 100.0 36 ............................. TTGACATAATAAATTAATTATGGTAATATAAAAATG 7003 29 100.0 36 ............................. ATACACACTAAGGAGATATATAAGCCTAAGGTGATC 6938 29 100.0 37 ............................. CTCTATAGAATGTTATTCTTAACCAGCCCTTAGTTCT 6872 29 100.0 37 ............................. GCATTAGCTAAACATATAGGCTGTGACTCCTGCTTTG 6806 29 100.0 37 ............................. AATAAAGTGATATCTGAACCAAAACCTTGAACAGGTG 6740 29 100.0 37 ............................. TGATACAAATAGACTATTCATGAGGGTAGCCCAAAAC 6674 29 100.0 37 ............................. TGGCATAAATCCTTGAATAGTAACTATAACAGGTTCT 6608 29 100.0 37 ............................. AAAAGAAAAGGACCTTGGAAACACTTAAAAATTATGT 6542 29 100.0 36 ............................. AAGCTTAGTGTAACTATTTGGCATCAGAATATTAGA 6477 29 100.0 36 ............................. ACCGCATAAAGCTCAAATACAGGTTCGCTTCCAATT 6412 29 100.0 38 ............................. TCTAACTATCTCATTAACATCACCGCTGTAATTTTTCA 6345 29 100.0 37 ............................. TAACTGTTGATAGCTCTTACCCTATAATACCAAGTTT 6279 29 100.0 37 ............................. CAGGATAAGTATTGCACTCACCTTTGAATTTAGCATA 6213 29 100.0 36 ............................. TTATTACTTTAGTGTCATGATTAAAGCTAACTTGAA 6148 29 100.0 37 ............................. TATTTTAACATTTTCTTAATATCCTCAAGTTCAGATC 6082 29 100.0 36 ............................. AAGAAGAGCTACTAGGGAAATGATACTAGAAACAAG 6017 29 100.0 36 ............................. AGGGTAAATAAAGGAGGACCTTAAAGGCCCTCATAT 5952 29 100.0 36 ............................. AAGGTAAAATGCAGGCAATGAAATCAGCGATTGAGG 5887 29 100.0 37 ............................. TTGGAAAGAGCATTTTGTTGCTATGGGACTAAAGACA 5821 29 100.0 36 ............................. GGAAGAAGATGAAAAGGGGTTAAGGTTTGAGATTGA 5756 29 100.0 37 ............................. TTTTAGAAGAAGGAGAAAATTTTGTGTATTTTGCAGA 5690 29 100.0 37 ............................. TTTTGAATTCGGTACGAAATTCGTACTGAATTCCCTA 5624 29 100.0 37 ............................. GATGAAAGATTAGCCTTTACTTCTATTGATATAGTAT 5558 29 100.0 37 ............................. ATCATAGGAAGTCAGAGAAAATTACAAAGAAAATTAA 5492 29 100.0 36 ............................. TGGCTCCATATGTAGGAAGTAAACAAATTGCTAAAA 5427 29 100.0 36 ............................. GCACTATAAGTTGGATGATATTTCCCAGTACTACTT 5362 29 100.0 39 ............................. TTAAATGAATTTATCATCTCAATTAGATTTTGTTTATCA 5294 29 100.0 37 ............................. TGTTAGAGCAATAACATATTGGAAAAGAGAAAACTTA 5228 29 100.0 37 ............................. TTATTCCCACTAGCAAGCAATTTAAATTTATCAATGA 5162 29 100.0 36 ............................. GATTTACATATATACCTTTGAACTGAACATCCTCAT 5097 29 100.0 37 ............................. GGGATAGATCGGCTTCAATGAATACTCTTCCAGGAGA 5031 29 100.0 36 ............................. TTTACTGATAGTGAATTACACACTGCTCTATTATCA 4966 29 100.0 37 ............................. ATTGTGAAGACACTCACATTTTATAGGGCTGGTACTA 4900 29 100.0 36 ............................. TTGACATAATAAATTAATTATGGTAATATAAAAATG 4835 29 100.0 37 ............................. GTACTACAATGGTGTCTTAAACTTAAGAATGAGAAGC 4769 29 100.0 36 ............................. CTATATTTTATATTCATACATTTTACATAAAAGTCT 4704 29 100.0 36 ............................. TTTTACATTGAGGTATTATTGTAGACTCCCTTATAA 4639 29 100.0 37 ............................. TAGCAAGGTTCCTTAATTGTTTAGGATGTGTAAAGGG 4573 29 100.0 36 ............................. GTTAATTTAAATGATAAAAGAGGTCAAGCTAGACTT 4508 29 100.0 37 ............................. TAGGTTGTGTATCTCTTATATCTTGTATTACTTCTTC 4442 29 100.0 36 ............................. ATATCAGTCTGATATCCCACATATCAGTTGAAACTA 4377 29 100.0 36 ............................. ATGATATAGAAACTAGAGGCTTAGATAGGTTTAATA 4312 29 100.0 36 ............................. ATGTTAATAGACTATAAAACAATTCCAAATCCATTC 4247 29 100.0 36 ............................. TTCTGTAATTTAAGGGAATAAAAAAAGACTATCTCT 4182 29 100.0 37 ............................. TAAATAATCCACCGTACTTTCCATCAAGACTAATATC 4116 29 100.0 37 ............................. CAAGGTATAGTGTCTTTAATATATAATTTTTCATTTA 4050 29 100.0 37 ............................. GTAACAAGATGTTCTCCTATAACTCTATTAACCTTAA 3984 29 100.0 36 ............................. GATGTAACATGAGCATTTTCTATAGTTGTAACTTGT 3919 29 100.0 37 ............................. TTCTAATACCAGGAATGTTTTGGCTTCCATCTAAACC 3853 29 100.0 36 ............................. TATCTTATAAGACTTTTTAAAAATTTTGATGGTGTT 3788 29 100.0 37 ............................. AAAAGATACATGAATATTTTACCATATATATTTTTTT 3722 29 100.0 36 ............................. GTTTTCAAAATATCAGAATTAAGCTTTGATAATTTA 3657 29 100.0 37 ............................. AAATAATCAGGGTGAGATGCACGAGAAACCCTTGCCC 3591 29 100.0 38 ............................. TTAGTTCACACTCAGGATTTTTTACATACAATATTGTA 3524 29 100.0 37 ............................. GAGAGAGCAGCAAAATTTGTTGGAAGACAAATGTTAG 3458 29 100.0 36 ............................. TTAGCTGCATTTAAATCAGTTATATCAGCTTTCATG 3393 29 100.0 36 ............................. CGGTGGAATGGAGGAATATGGTTACACTATAGAAGA 3328 29 100.0 37 ............................. TAAGCTGAACTTCATGATTCGTTTTTGCACTCACGAC 3262 29 100.0 37 ............................. ACCGAAAAACCGACCAATAATGAAAACATTACAGAAG 3196 29 100.0 37 ............................. CATTTGTTAGGGCAATAAAAATATATTTTTCTAGTAC 3130 29 100.0 37 ............................. TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 3064 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ======================================= ================== 67 29 99.7 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAATAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAATGAAAAAAAGCATCTTAAAAAGATACTTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATAGATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //