Array 1 56687-57241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXMR01000002.1 Clostridium botulinum strain NCTC 11219 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56687 30 100.0 35 .............................. AGAGATTACATTGACTTGGTAGAGGAATATTTAGA 56752 30 100.0 35 .............................. AAATATTTTACAGATATATCAAATATTATTTCATC 56817 30 100.0 37 .............................. GGAACCTTATTCCAATCTCCAGTAACTCTTTGTTTAG 56884 30 100.0 36 .............................. GGATTTAATAACTTGTCTTTTGGAGGTTCTATACCT 56950 30 100.0 36 .............................. GGTACATGTAATGTTTAATCCAGTTAGCAAGTCTAA 57016 30 100.0 36 .............................. GTGACTAACCTATTAAAGAATCGTGATGCTATTCTT 57082 30 100.0 36 .............................. ACTAATAATGCTAAGGATTGTATGAAAAGTAATTAT 57148 30 100.0 35 .............................. ACTTATAATTTTATCTCAATATGTGAAAAATTTTC 57213 29 76.7 0 ...............-.T..AA..G.C..C | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GAGTTTTTACTTTGGATTTTTTATATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAAGTAATTAGTGTTTTTTAGGAACACTTAAGATTTAGTTATACTTGACAAAGTATCCCATCTAAAGAGTTATAATGATTTTTTTAATTGTTATGGCTCTTTATTTCTGTTTAAAAAAATATAGATATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCTTAAATTTATATAAACTCCCCTAATCCATTGAAATTACAGGTCTAAAGTGACCTTATAAAATTTTTTTCAAAATTTTATAAACGGATGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGGGGTATTATTGATTTTAGGGAATGGCTATTTTACTGTG # Right flank : CCTATGAATGTAAGTTTTCGATCATTTAAGAATGTAGTTTTTTAATCTTCGTCTTGCTTAAAATGATCTTTTAGTCTATACGACTTTCCATTAATTGTAACAACGTGAGCATGATGTAAAACTCTATCTAAGATAGTGCTAGCTATAACAGCATCATAAAAAATATCATCCCAAGAATTAAAATTTATGTTGGTAGTTAAGATAGTACTTTTCTTTTCATATCTCATGTCAATTAATTGAAAAAATAATTTTGAATCTTCTTTATCTATAGGTAAATAACCTAATTCATCAATAATAAGAAGCTTATATTTACTAAAGTGCTTAAGTCTAGCATCTAATCTATTTTCTAGATTTGCTCGCTTTAACTGCTGTAATAAATCATTGCACTTAATGAAATAAGTACTGTAACGTCGCTTCGCAGCCGCGATTCCTATAGAAGTCGCAAGATGTGTTTTACCGACACCACTAGAACCTAAAAATACAATGTTTTCTTGTGATTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 60990-61675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXMR01000002.1 Clostridium botulinum strain NCTC 11219 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60990 30 100.0 36 .............................. AATATTTTGATAATTGGCACTCCTAAAGCTTTTTCT 61056 30 100.0 36 .............................. TTCCTTTCATATTTTGTATCCGATTCGGACACAAAA 61122 30 100.0 35 .............................. CATAAATTTCTTAATGATTGTACAGATGATTTTAG 61187 30 100.0 36 .............................. TAATCTGCTCCATTCATTGCATCACAAGTTGTATCC 61253 30 100.0 35 .............................. AGTAATAAAGCAGCAGTTCTGTATTGTGAAGTCCT 61318 30 100.0 37 .............................. TTATTCTTTTATCCTTTCTGACTACCAACTTTCATTT 61385 30 100.0 34 .............................. GCAAATAAAAGGAATATAAAGGGATAAAGAGTTA 61449 30 100.0 36 .............................. GTTTCTTTAATAATTACATCTTCTTTTGATAAAAAT 61515 30 100.0 36 .............................. CTAGAGCACATATTTATATCTATTTTATAATCATAA 61581 30 100.0 34 .............................. TACTGTCTACACCTTCTAGCTGTAATAATTACAG 61645 30 90.0 0 .................T.....G.....G | G [61672] ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.1 36 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCCTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCAAAAAATACAGATATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAACACCTTAATCCATTGAAATTACAGAGCTAAGGTGACCTTTAAAAATTTTTATTAAAATTTGACAAACGGCTGGGAAAGTTTCCTTCAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATACAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTGAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //