Array 1 186152-183191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCD010000008.1 Salmonella enterica strain F2-13 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186151 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186090 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186029 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 185968 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 185907 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 185846 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 185785 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 185724 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 185663 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 185602 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 185541 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185480 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185419 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185358 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185297 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185236 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185175 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185114 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185053 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 184992 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 184931 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 184870 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 184808 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 184747 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 184686 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 184625 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 184564 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 184503 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184442 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184381 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184320 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184259 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184198 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184137 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184076 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184015 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 183954 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 183892 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 183831 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 183770 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 183709 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 183648 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 183587 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 183526 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183465 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183404 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183342 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183281 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183220 29 96.6 0 ............T................ | A [183193] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203784-202411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCD010000008.1 Salmonella enterica strain F2-13 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203783 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 203722 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 203661 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 203600 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 203539 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203478 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203416 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203355 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203294 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203233 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203172 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203111 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203050 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 202988 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 202927 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 202866 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 202804 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 202743 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 202682 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 202621 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 202560 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 202499 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202438 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //