Array 1 97137-94129 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYU01000008.1 Ruminococcus sp. TF12-2 TF12-2.Scaf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 97136 32 100.0 35 ................................ CCTCAAAATCCCACACCCCTAAAGGCTTTTCAATG 97069 32 100.0 33 ................................ TATTTTTGTATGTAGTGCTGTTAAACTGACCAT 97004 32 100.0 36 ................................ TATCATTGGAATATAATCCCATTGAAAACTATTCCA 96936 32 100.0 33 ................................ AAATAATGTATGTTCTTTTGCACCGCTACCGAA 96871 32 100.0 33 ................................ TTAATACAATTTTGTAGGGGTCATTAATATATG 96806 32 100.0 35 ................................ CGTACGTTACCTTACTATCATAAAATTTTGACTGA 96739 32 100.0 34 ................................ GAAATGAAAGGCACTGAGGAAGAGGAAGCTGAGG 96673 32 100.0 33 ................................ GACACAACGGGACTAAAACGCGGCGATAATAAT 96608 32 100.0 34 ................................ ACTATATGAACCATAATTTGACATTCTGTCAGTG 96542 32 100.0 34 ................................ TACAAAATAGTTGCAACGTTGCAACTATTTTAAT 96476 32 100.0 35 ................................ GCCATAAGGAGCATTTACCAACCAGTCAACAGTGT 96409 32 100.0 35 ................................ CTGTAGGTTGTTCGGCTAATGATTGAACGTGTAGG 96342 32 100.0 34 ................................ AAACGGCATATACGGAAAGGGTACTGAAAAAGCC 96276 32 100.0 36 ................................ GACGTGTAAAATTTGCCAATTGATAAATGTTCATAA 96208 32 100.0 33 ................................ TGAAAAATTCTGCCACGCAAGCAGAACCCATTG 96143 32 100.0 34 ................................ CGTCCATATATTGGCAATTCAACTACACGTGGCT 96077 32 100.0 34 ................................ TTCCGTCAAAAATAATATCATCGTTTACGGGGTT 96011 32 100.0 33 ................................ GCGTCATATTTATAAAAATAGTTCCAGTATTCG 95946 32 100.0 33 ................................ CGGTATTTGTATTATATAGGTAAAATTCTCTAT 95881 32 100.0 34 ................................ TGTTAATCTCGTCAATACAATTTTTGTTATATTC 95815 32 100.0 33 ................................ GTGTCTGTTCCTGTTTCTGTCATGGAATAGTTT 95750 32 100.0 34 ................................ CTGATATATCTTTCTTTTCTGTATTCCATTCTTT 95684 32 100.0 33 ................................ TTATGGATAAGGATTTTCTGAGATATGCCATAG 95619 32 100.0 35 ................................ TTGTGCAACAGACAAAACAAATCTTTATCAACTGG 95552 32 100.0 37 ................................ CACAAGAATGGTAAACGTCGAGGACAACAAAAAGGCT 95483 32 100.0 35 ................................ GCAGTGCTTGTAACTCTTGACAATGAAGTTATTGA 95416 32 100.0 34 ................................ GTCAAGTCTTCCGCTGTTTTTGCCAAATTCATTC 95350 32 100.0 34 ................................ GAAAAACGAGTGGCAGAACATAACAATTTTGCTA 95284 32 100.0 35 ................................ CGTCCATATATTGGCAATTCAACTACACGTGGCTG 95217 32 100.0 33 ................................ TCTTTTTTAATTCAAGATTTTCCGTCTTTGTCT 95152 32 100.0 33 ................................ TTGACAAATCAGATAGTTTTATCAATGATACAA 95087 32 100.0 34 ................................ GACAGAACCAACAGAGGAAGAACCGGCAGAGGAA 95021 32 100.0 35 ................................ TTTACGTTGAGCTTGCCGACAAGAATACAAGCAGC 94954 32 100.0 34 ................................ GAACTATATCCGTGAATATGTCGAGCTGATTAAA 94888 32 100.0 34 ................................ TTTTAAAACAGGTACGAAAGGCGAAAATCGTGCA 94822 32 100.0 34 ................................ GACATAATCTACGGTCATTAAGGTCAGCTCTAGA 94756 32 100.0 35 ................................ TAAAGATGTTTTTGCAAGAAACGCCCGACACCCTA 94689 32 100.0 33 ................................ CTATAATATCTTTTTTTTCCGTATTCCATTCTT 94624 32 100.0 34 ................................ TATACAGACTATTTTTGATAAGGTATCAGCGGAC 94558 32 100.0 34 ................................ TTATGCAGTAAACAAAATAAATCTTTATCAACTG 94492 32 100.0 35 ................................ ATTAAGTCGTTCATGTCGTTTTCTGTTTTTGCTGA 94425 32 100.0 36 ................................ TTCCAGTTTGACCCCTGCTGTCTGAGTATTCCAAAG 94357 32 100.0 33 ................................ TTGACAAATCTGATAGTTTTATCAATGATACAA 94292 32 100.0 34 ................................ TTTAGGAGGTATAACATATGGCAAGATACATCGA 94226 32 100.0 34 ................................ GTAGTACAGCATTACGCCTGACATTGCCTGCTTG 94160 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 46 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGACGTGTCTACCACGGATAATAAGGGCAAAACAAGACTTAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCTGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAACGCACAGTGAACAAAATCAAACCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : ACGATAATGTAAAAAAGAGAGAGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACGTAGATGAAATGTCAACTGTATGTAGGGATAATCAGAATAATGTAAGTATCGCTGTAAATCCCAATTCTGAAAGGCAGGGACATCCTTATTTCAAATTTTATAATAACGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGATAATAAAAATGCAGAAGACCAAAAGCTTTGGAAACTTTCGCATAATGAAAAGAAGTTGCTTAAAGAACTTTTGAGTAGTCCTTCTGCAGAATATTCAGATATGACTATTTGGGAAGCTTGTAAATTTGAGTGGAACTTTGAATATTTAGAGCAATCTATTAACTTAGATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCCTACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139911-140094 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYU01000001.1 Ruminococcus sp. TF12-2 TF12-2.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================ ================== 139911 23 100.0 32 ....................... ATTACGCTCAAAACGAGTAATTACTCGGGAAT 139966 23 100.0 31 ....................... TAATATCTTAGACATTATTTTTGTAAGGTAA 140020 23 87.0 29 T.A....T............... TAGTATTTTGAGCATAAAAAACATTAAAA 140072 23 95.7 0 ..........T............ | ========== ====== ====== ====== ======================= ================================ ================== 4 23 95.7 31 AATTACAATTCATAATGAGATAT # Left flank : TCCGGCTCCATAGGTTCGCCGCCTAAGAGTGTAAGTCCTTTTATATAGCCCTTTGAGAGGGCGTTAATTATCTCGTCTGCGGTGGTATCTGTGAAAGGCTTGCCGTAGTCAAAGTTCCAGGTGTCAGGCTGAAAACAGCCCTTGCAGTGGTGTCTGCAGCCTGATACGAACAGCGTGACCCTCACTCCTGAGCCATTGGCGATATCGGTTTTCTTTATCTCACAATAATTCATTTTCCGCTCCTTTCATACATACAACGCAGGGCAATACGATTTTGTATTGCCCCGATAGTTATATGCTGTTTGCTGTTTTATGTCAATAATAATGTTCATTATTTTCGGATTTTGCAGTTTTGAGTTTTTGAGTTTTCCTTGCTATAATGTTCATTTTTTTGACGAGTTTTGATTTTTGAACTTTTGGGTTTTAACGGCTATAATGTTCACTTTTTTGAAAATCGCTCAAAAAAATTTTTGGGTTTTTGTCATATTACATGGGTGTTT # Right flank : TAATAGATGTATACTGTATCTCATTATCTTCTACAGAATATTATAACACTTTTAAATGAGAAAGTCTATATATTTTGCGATATTAATATTAATGCAGCCTATTAAAACTTCATATTTATATCGCAAAGCTTCTTGTAGCGTTCTTCACTTAGCTTTCCTATGTTGTAGTTCCTTCTTTGCAGTACCACCCAAACGCCAAGTTTTTCACCCTCAAAAATAGTTCGTTTTGTTATATCTGAACTTCCGTTATTTTGTTGTATATATCTTTTATATTGTTCGTATCTTCTTTCCCATTCTGCAGCTAATGGATCAAGTGTTATTCCTAATGATACAAGAGCGTCTTCTTGTGATCGAGTCAGTTTACCCGCCTTATATTTGTCTCTCTGCGATTGCAACCAATTGCCTAGAAAGACACCTTTATAGTGATCACGCTTTGGTATATTGGCAGTGCCACATTCCTCTTTGTATTCACAGAGTAAGGCATACCCTTTTTCCCAAGA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTACAATTCATAATGAGATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //