Array 1 321-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHR01000036.1 Lactobacillus acidophilus strain DS13_1A DS13_1A_41_length_368_cov_44.652921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 320 28 100.0 33 ............................ CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAA 259 28 100.0 33 ............................ CGGGTAAACAAGTCAGAGTTACTCGCAGCAAAT 198 28 100.0 33 ............................ TTAGGCGAAACCCCGAGAGCAATTTCAAGCACG 137 28 100.0 33 ............................ TAAAACGTTGAAGCTTATTGTCCGCTTTAACGT 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : ATGTGGAGGTGATCCTATATACATAGTTGTTTGTTTCAAAAATTGCC # Right flank : CTGTTTACAACATCATGGTTAGAGCAAAACTTGTATTTTCTCCACGTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 49-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHR01000009.1 Lactobacillus acidophilus strain DS13_1A DS13_1A_9_length_65110_cov_23.003906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 110 28 100.0 33 ............................ CGGAATGTATGATAAAAATTGGCTATTTGCCTA 171 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 232 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 293 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 354 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 415 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 476 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 537 28 71.4 0 ..........AAA.A......C.C..TA | A [560] ========== ====== ====== ====== ============================ ================================= ================== 9 28 93.3 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : ATGTGGAGGTGATCCTGTTTACAACATCATGGTTAGAGCAAAACTTGTA # Right flank : AACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 19721-20785 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHR01000016.1 Lactobacillus acidophilus strain DS13_1A DS13_1A_16_length_20786_cov_23.441885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 19721 27 100.0 34 ........................... TAAGAGAAAACGGTGGTTTCCTCTTATTTTTATG 19782 27 100.0 34 ........................... TAAATCCGGACAACGCTTGCCACCTACGTATTAG 19843 27 100.0 34 ........................... TCATTGAGACACACATTGCGACGACTAAACTCTG 19904 27 100.0 34 ........................... TTTTAATGAAAGGTGCTAGTTTTGTGACACTTTG 19965 27 100.0 34 ........................... TGATTTTCCAGATTCGGCTACTATTTTGGCAGAG 20026 27 100.0 34 ........................... CTTAGGCTATTCCGCACACAATATGTGGCGTGGG 20087 27 96.3 34 ..............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAAG 20148 27 100.0 34 ........................... CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCG 20209 27 100.0 34 ........................... TGCTGCTACGAGCGCTTTTGGTCACATTAAAGAG 20270 27 100.0 34 ........................... TCATTGATGCACCGGTACTTAACTCAAATCAAAG 20331 27 100.0 34 ........................... TGACTACGATATTTTCTTTTAATTATATCTTGGG 20392 27 100.0 34 ........................... CAATATCATCAGCATTTTTCACACCAGAAAATAA 20453 27 100.0 34 ........................... CGATTTGCGTGGCAAATGAATGGTTGATCTTGAA 20514 27 100.0 34 ........................... TATTCTTTTTCACTATCAAAATCAAATATTTCTA 20575 27 100.0 34 ........................... CACAAAAAAGCCACCTAGAAGATAAAATTCTTCA 20636 27 100.0 35 ........................... CCTTAACTAGTGCAAATTTAATATTTGGATAGCTA 20698 27 100.0 34 ........................... TGTTTACAACATCATGGTTAGAGCAAAACTTGTA 20759 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =================================== ================== 18 27 99.8 34 TTTTCTCCACGTATGTGGAGGTGATCC # Left flank : CGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGTG # Right flank : T # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //