Array 1 3184-110 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEOS01000293.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 contig00317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3183 36 100.0 30 .................................... ATTGTGATTCATCCAAAGTAATCACCTCCC 3117 36 100.0 30 .................................... GAACACAATGAGTTGTTATTAAATATTGGA 3051 36 100.0 30 .................................... AATACCAGGTAACACATCGTTTGCTGCTTT 2985 36 100.0 30 .................................... CGACTTTACAAATTGGTTTAAGGATATGGC 2919 36 100.0 30 .................................... CACCGACCCAGTTAATATCAAGTATCGCTT 2853 36 100.0 30 .................................... CCAAACAACTTATACTTCATCGCTTCACCA 2787 36 100.0 30 .................................... CTGCAATCTGTCTAGCCCTTAGCTTGGCAT 2721 36 100.0 30 .................................... CGGAGATAAAGAAACTCCCGCCAAGTTTTA 2655 36 100.0 30 .................................... CAGGCTGGACTAGTTGTTTTTGAGAATGGC 2589 36 100.0 30 .................................... TCCATGGCTGGTGCGCAGTTTAGCTCTGGC 2523 36 100.0 30 .................................... CAGTGGTATGCTAAACCTTCGAAAGTTAAA 2457 36 100.0 30 .................................... TTAGTGACACCAGCTAAATTGCGTTGCTCT 2391 36 100.0 30 .................................... CGCGATCACCTCCGTAAATTTAACTTTTAG 2325 36 100.0 30 .................................... AATGGCGTCACAATTGGGCTACCGCTGTTA 2259 36 100.0 30 .................................... CACGCATTTCAACTTCATTAGCTGTTCCAT 2193 36 100.0 30 .................................... GAGGTAGGCATCACACTAAAACATGATGAA 2127 36 100.0 30 .................................... CATGGGGATGGACTATAATCCGTTAAATGT 2061 36 100.0 30 .................................... CTGGCTACCCCGCCATTAATACAGCGGCTA 1995 36 100.0 30 .................................... GAAAAACGACACCAGTTCTATAGGGCTTTC 1929 36 100.0 30 .................................... CCCGATTAATGCAACAACTAAAAAATTAGA 1863 36 100.0 30 .................................... CTTGACCGATGAGAGTAGCGACTTGGTGGG 1797 36 100.0 30 .................................... GATAAACTTTTGGCGGTGCAGTTTCTTGTT 1731 36 100.0 30 .................................... AGCACAACGAGCGTTATCGATTGAACCAGC 1665 36 100.0 30 .................................... GGTTCTGGGATATAGTGATACAGACCAAGC 1599 36 100.0 30 .................................... AATGGTATCCAGCTCATAAGAATTCCATAT 1533 36 100.0 30 .................................... CCAGGCTCACGCTCCCTACGGTGACCGCTG 1467 36 100.0 30 .................................... CCGGATAAGTTGCGTTACCGCGTTGTGGTT 1401 36 100.0 30 .................................... TGATGAATACTCCTTTAGCAACTTTTCAAA 1335 36 100.0 30 .................................... TACCAGTAACGGTGCCCTCCACTGCAAAAA 1269 36 100.0 30 .................................... CATCATACGGAACAGCATAAGATAGGCATT 1203 36 100.0 30 .................................... GGCTCAAGCCGGTTATATCGTTTTTAGGAC 1137 36 97.2 30 ..................G................. GCTAGTGCCGCCGGTAGTCAAGCTAGTGCT 1071 36 100.0 30 .................................... ATATGACTTAAAACTTGATAACTTAGAGGT 1005 36 100.0 30 .................................... CAGTATCTTGCGAACCATCAATACCAGTTG 939 36 100.0 30 .................................... ACTGTGGTTCTGAGCGCTCCTTAAGTTGTG 873 36 100.0 30 .................................... CTGAATGAAAGACTTATCAGTCAATGCTTT 807 36 100.0 30 .................................... GATTAATGTCATCATTAATACTATTCAAAG 741 36 100.0 30 .................................... CTCATCTTGCCCAGTATCATCAAGTGCAAT 675 36 100.0 30 .................................... ATTACGAGCCGACGCTATCAGCAAACAAGC 609 36 100.0 30 .................................... TCTTGACATCATTTGTTGCATCTTCAATAA 543 36 100.0 30 .................................... CCCAATGATTAACAGCGATACTGATTTTGT 477 36 100.0 30 .................................... CACAAGCCTAGCAATACAGCCTGATGGTAT 411 36 100.0 30 .................................... AGCTATGACTTCTATGAATTTTTTCTCTAA 345 36 100.0 30 .................................... AAGGCGCTACCGTGGGAATACTCGGCTTTA 279 36 100.0 30 .................................... AAAGATATTTTGCGGAATCTGCACGGAAAA 213 36 100.0 32 .................................... CAATGGGTATAATCAAGGCATGGCAATACTAG 145 36 72.2 0 .G...G......T.AG....A....A...T.G...T | ========== ====== ====== ====== ==================================== ================================ ================== 47 36 99.3 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GGGGAATTTCATTCTTTGAGCAATGCAGTTCATAAATTAGTATCGTCGTACACAACTTGTTGTCGTAATAATTCTGCCGCGGGTTTAAAGTTACCGGAACTGATCCCGCTGGTGGCGCACGAATATGAGTAGTAAGTATATGCGTTTATTAGTAATGTTCGACTTACCAGTAGTAAAGGCAAAAGAGCGTCGTGCAGCAGCAAAATTCCGGCAATACTTATTAGGTGATGGTTACGTGATGATGCAATATTCCGTTTATTATCGCATTGTTAATGGCTACGATATGGCTAAAAAGTATGAGCTGCGGCTCGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTATTAGTTGTAACAGAGAAACAATTCGATGAAATGCGTCTGTTAGTAGGTGATCCACTACCAAATGAAGAGAAACTAGATAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATCAGGTTCTTTTAGTATACTG # Right flank : TCACTCTTTATGGATAAGTTATATTGATAATCATAATTGCCTTTTGTAATATCCCTTAGATTCTTAAGATATTTTTTATTCATTATTTTTGAATAGAACAAATACTTATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 10369-7890 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEOS01000293.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 contig00317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10368 36 100.0 30 .................................... CTGCGGAAGAGATTACCACGTATTACTAAC 10302 36 100.0 30 .................................... TTACATCAAAGAAGGTGAAAAAGCAGCACG 10236 36 100.0 30 .................................... TGCACCTTGAATTACGATTAACAATTTGTT 10170 36 100.0 30 .................................... TCTTTCCATGACTATTTACTTTTGAATAAG 10104 36 100.0 30 .................................... TATAGCCCCGACATTAGCCAATCAGGCATT 10038 36 100.0 30 .................................... ACTGCCGACCAAGTTATTTATCATATTCGA 9972 36 100.0 30 .................................... AACGCCATAATTGGGCGCCATTTCCTCAAT 9906 36 100.0 30 .................................... TCCCGTTTTATCCACGTGAAGGAGCTGAAA 9840 36 100.0 30 .................................... AATTGGCAGTCCTGCAATTTTACCAGCACA 9774 36 100.0 30 .................................... TGGTAAAGGTAAAGACAGTGTCTCACAAGG 9708 36 100.0 29 .................................... CTTTGCAACTCCGCCCTTGTTATTATAAA 9643 36 100.0 30 .................................... ACGTTGAGTCCGTTAAAGACAGCATCAACT 9577 36 100.0 30 .................................... GGAACTATCTAACTACTGTAAAACGTTTAG 9511 36 100.0 30 .................................... GCGTGTTTTGCAAACCTGACAGGGCTTGTT 9445 36 100.0 30 .................................... CAATCCGTCCTTTAATGAATTTACAAGAAA 9379 36 100.0 30 .................................... GTGGAGCTACGGTCACAGTGCTAGTGGGTA 9313 36 100.0 30 .................................... GTAAGCCAAGTGCAAACGTAAATTCAATAA 9247 36 100.0 30 .................................... GTCAAAGGCTGATGAGCTTACGAAAGCAAT 9181 36 100.0 30 .................................... TCAAAACGCCCAAGCCTATGATGCTTTACT 9115 36 100.0 30 .................................... TCGAGACATGTATACATCTGCATTGACTGG 9049 36 100.0 30 .................................... AAGAATCCTGTCATTCCAACGTTTATCGCG 8983 36 100.0 30 .................................... CAGCAACTTCAACACCATTCCCAACAAGTT 8917 36 100.0 30 .................................... CCAAAACTCGACAAACCGTAGTTCGCGATT 8851 36 100.0 30 .................................... TATTTGGCTTTAATCTGAATCTTGGCGATA 8785 36 100.0 30 .................................... TGCTTTGGTCGTTGCTGTTGCACTGGTAGC 8719 36 100.0 29 .................................... GAAAAGATAGAAGCACCCAAACTAATTCT 8654 36 100.0 30 .................................... TCCAGCAAGCCTTTTAACTCGTCTTGATTA 8588 36 100.0 30 .................................... TAAATCAGTTTCAAGTTCTAACTCAGATAT 8522 36 100.0 30 .................................... CCTCAGTTACCATAAGCGGATTGCCGTTAT 8456 36 100.0 30 .................................... CCTCAGTTACCATAAGCGGATTGCCGTTAT 8390 36 100.0 30 .................................... ACTGCGGTTCTGAGTAAATCTTCAACTGTG 8324 36 100.0 30 .................................... AGATGCGATGAACCTATTGTTTGCCGATAA 8258 36 100.0 30 .................................... ATAGCTCTACTGGCTTCATGGTTGGGTGAA 8192 36 100.0 30 .................................... CATGTGGTATCCATGACTTTTCAAGCATGA 8126 36 97.2 30 ......................C............. AGAAGTATCTTTGACCATTCGGCTGCTACT 8060 36 100.0 30 .................................... GTCCGGCACGTTTAGAGATACGGTCAAATG 7994 36 100.0 30 .................................... GCCATTGTTGATGGTGCTAAAGCTGCTGCA 7928 36 80.6 0 .....................T..T....A..ATTT | A,TC [7897,7900] ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.4 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : TTTAGCCTTTTGAATTGCGTCTTGATAGGTGGTTTCTAGCCCAGCTATTTTCACTTTAACCTGTCCCAGCATAGTAGTGTTTAATGTAGTAATCGGTTACATTTAGATACTTAGAAGCAATTTATACTCTGAGTACGTCATTACCAGCAATGGGGCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTGTTTGTGTACCTATGATTATAGTTGAGCAATTATCAAAGAAATTGGAAATGCGAAGTGTAGAATTAGTTATATAATCTCATTATTTATGTGAATAGCGATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGCAATTTAGTACCACTAACTGTGATTTCTGGGTGTTTTAGTCCGAACTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGCCCAGTATCCGTGTGATATCGGGCTATCGCGGTGTACTA # Right flank : ATCCAATAATCAACTTTTGCAACCGGCATCATTATGCTAAACTGAAGTAAATTAAAGAGATGGAGTTGATACTATGGGCTATCGAATAGGCTTAGATGTGGGGATTACGTCAACTGGTTATGCTGTTTTGAAGACTGATAAAAATGGACTACCATATAAAATTTTAACACTAGACTCAGTAATTTATCCGCGTGCTGAGAATCCACAAACAGGGGCGTCATTGGCGGAACCGCGGCGGATAAAACGAGGATTGCGGCGCCGTACGCGGCGAACCAAATTCCGTAAGCAACGAACGCAGCAATTATTTATACATAGTGGCTTATTGTCTAAACCTGAGATTGAACAAATCTTAGCAACACCACAAGCTAAATATTCAGTCTATGAACTTCGGGTAGCGGGTCTCGATCGTCGATTAACTAATAGTGAATTATTCCGCGTTTTGTACTTTTTTATCGGACACCGTGGATTTAAATCCAATCGTAAAGCCGAGTTAAATCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //