Array 1 66197-61608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBE010000010.1 Streptococcus uberis strain GCPRG119 Contig_10_248.478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66196 36 100.0 30 .................................... AATTTGAAAGTTATTTAAATCAACCTGACG 66130 36 100.0 29 .................................... TATTTTAGGTATTTCTAGCGTTAACATTG 66065 36 100.0 30 .................................... TTTTTTCTGGTGGTTTAAGTGGTGCAATTG 65999 36 100.0 30 .................................... GCTCTACACTAAATAAAGTGAAGACAGACA 65933 36 100.0 30 .................................... ATTGTGAAGAATCCAACCCAACAGTAACTT 65867 36 100.0 30 .................................... ATAATGTAATGACATTGATAGATGCGTTTG 65801 36 100.0 30 .................................... TTGTCGATAAAAATTTCGCTAATACTTTTA 65735 36 100.0 30 .................................... ATTTGGATTTCGAAGAATTTCGAATGAACG 65669 36 100.0 30 .................................... TGCGCTTATTTTTGATATAACTTTATCTCC 65603 36 100.0 30 .................................... TTTTCCCATAATGCGTATAATAACGACGAT 65537 36 100.0 30 .................................... ATAGTAAATTATCTGGCGATTGGGAACTCG 65471 36 100.0 30 .................................... AAAAGGCCTGATAAGAAAGTACCGTTATTA 65405 36 100.0 30 .................................... AACTAGTATCAGAAGATAACCCCAAAGGCA 65339 36 100.0 30 .................................... TTTAGATGAAGACTTACCAACTTATATGCT 65273 36 100.0 30 .................................... ACACTTACTTGTTAGCAGAACAAGGCATTT 65207 36 100.0 30 .................................... CCTGACGGTGTCGCACACTCTACGACATAT 65141 36 100.0 30 .................................... GTTATGTCGACGGCGAAGACTTCACTTCCA 65075 36 100.0 30 .................................... TTGCTGTAGAAGACAATGCTGGAGAAGCTA 65009 36 100.0 30 .................................... CGAATATTGATTTATGGCAAGCCAGGAAAT 64943 36 100.0 30 .................................... TTAAACCAGAACTAGTAAAACAAATGATTA 64877 36 100.0 30 .................................... TTATTATTTCAAAAGGAGAAACCACATTGA 64811 36 100.0 30 .................................... AGAGAGACCAGCAACTAAAAAGAGAACGTG 64745 36 100.0 30 .................................... GTGCTTTGACAAAAGAAAATATCATGGCTG 64679 36 100.0 30 .................................... GTACTGATTACAACTGGTCACAGTTCGGTT 64613 36 100.0 30 .................................... TACTCTGATAAGACAACAAAAGCCGACTCA 64547 36 100.0 30 .................................... AGCTTGGGAAACAACACAAGAATTAACACT 64481 36 100.0 30 .................................... ATTTGACAAAGCAACAATCAGACGAAGTCA 64415 36 100.0 30 .................................... GGCAAGCTAAGTAGTGAGGTTAGATAACTT 64349 36 100.0 30 .................................... ACATGAAGCAATTAAGAGAACAAGAAATGA 64283 36 100.0 30 .................................... AATCAACCCCCAATTATTCTGTAATCCATT 64217 36 100.0 30 .................................... ATTGCAACTGCATTTTCATCGTAAGCCGTT 64151 36 100.0 30 .................................... ATAATGTTTCGATGTCAATTGCAGTTAGAA 64085 36 100.0 30 .................................... AGATTCCTTTTGGTATCTCTCGTGATTGGT 64019 36 100.0 30 .................................... ATGCTTTGGAAGAGAATGAACCAATAGACT 63953 36 100.0 30 .................................... AAGCCTCAATAGTGATTGAAAGTGTCTTCT 63887 36 100.0 30 .................................... CGAGTCATGAAAATTTGCGTGCATCTGCTA 63821 36 100.0 30 .................................... AAACCGCTGAAATTCTATCCGACTACACTT 63755 36 100.0 30 .................................... TAATTCCTTGAGCCTGTGATCCAGCGATGG 63689 36 100.0 30 .................................... AATTCGATAACTGGATTATAAGTTCTTTCT 63623 36 100.0 30 .................................... TACTTTACCCAGAACGTATCGACGGTGTTG 63557 36 100.0 30 .................................... TGCAAATTTAACAACGGAAAATATGATTTA 63491 36 100.0 30 .................................... TCAATAAACAAAACATCGAGTACGAGACTG 63425 36 100.0 30 .................................... ATGGGATGAGTAATGTTATCAATGGAGGGT 63359 36 100.0 30 .................................... CAAACAGTAGAGCCCAGCTTCTACCATGGT 63293 36 100.0 30 .................................... AATCTATCTCTAAGCTGCTTCATCAACTTA 63227 36 100.0 30 .................................... TAATTCCTTGAGCCTGTGAACCAGCTATTG 63161 36 100.0 30 .................................... GTATTTTAAAAAACTCATCACGACTGATAA 63095 36 100.0 30 .................................... ATACGTTACGGTTAGAGGCCGAAAAGGTCG 63029 36 100.0 30 .................................... GTTTTAATACAAGAAGCGATTAAACTTCTT 62963 36 100.0 30 .................................... TTATTGAACTAAAATTAAACTGACCAGAAT 62897 36 100.0 30 .................................... CAAACTTGGTACAACCTCAACACAGCAGAT 62831 36 100.0 30 .................................... ACCATGACAAAACAGGAATGGTAGCAACAA 62765 36 100.0 30 .................................... ATAAAAACGTCATCTATGACTGGACTGGTA 62699 36 100.0 30 .................................... TCCATAACCCCAACCTTGCCTTGTGATGTG 62633 36 100.0 30 .................................... AATTAAGTGATAGCTTGACTATTGAAATGC 62567 36 100.0 30 .................................... CACTTTTCCAAAACCAGTGGACAGTCCACC 62501 36 100.0 30 .................................... ATGGAAATAATGGTGCTGATGGTATTGCTG 62435 36 100.0 30 .................................... AACATTTATGAAACAGAAAGCGTGGAAGAA 62369 36 100.0 30 .................................... GGAAACGACAAATGAATATTGAAAAATGGG 62303 36 100.0 30 .................................... ATCTTAGTGTTAAGATAAAGAGGTTCAATA 62237 36 100.0 30 .................................... CAGTCCAAAATAAATGGTTTGATGAAAACG 62171 36 100.0 30 .................................... TGTTAAAGCTGCGATACAGATGCAAAGAAA 62105 36 100.0 30 .................................... CTCAAGATAAAATTGTAGAATATGGTACTA 62039 36 100.0 30 .................................... TTATGGAAACTGCAAGGGATAACTGGGATG 61973 36 100.0 30 .................................... AAATACGTTGATAAAGTTGGCGGTCGGTCT 61907 36 100.0 30 .................................... TAGTTACTGCAATGCCTGAAGGCGTAACTC 61841 36 100.0 30 .................................... CTCACTCAAAATGGGAAGCAGAACAACAAA 61775 36 100.0 30 .................................... ATCATGTTGATATTTACTCAGATGGCACTA 61709 36 100.0 30 .................................... AGATAACTGGTAAGTCATCAGAGAGCACTG 61643 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ============================== ================== 70 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTAGATGACTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTACCCAACTAATGATTATCCAAACGAAGATCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATGATGAAGTAACTTTTGAAATTCCACATGTGAATTCTATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : AGTGTTCTTAAGTAGATTTGGCAACTGTTTATTTTTAAATAATTCCATATTACCTCAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATATAATGGTCTTAAAAATGTATATCGAGAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //