Array 1 96499-94678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXU010000002.1 Streptococcus parasuis strain BS27 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 96498 36 100.0 30 .................................... GGCAACCATCAGCAGCAATTCCATTTCTTC 96432 36 100.0 30 .................................... AATGGTATTCCAGTAAGTCTTTTCAGCCTC 96366 36 100.0 31 .................................... CTCCTTCAGGGATAGAATCGTAAACTGCTTT 96299 36 100.0 30 .................................... ACTAGTACTTTTAGGTAAAACTTTGAACGT 96233 36 100.0 31 .................................... CATCTCTGCTCATGTCTGGTGCTACCTCGTA 96166 36 100.0 30 .................................... TTTTTTTATTTTTTTTGCGAATTGATAAGT 96100 36 100.0 30 .................................... ATCCCAACCCATTTGCTTTGCAATGTAGCT 96034 36 100.0 30 .................................... CCCATCACGCACACGATTTAACAATCCAGT 95968 36 100.0 30 .................................... CAAGAAGCTGAAGCAGGATTACACGCCCGA 95902 36 100.0 30 .................................... AGATAGACTTCTCAAAGCCCAGATGGAGAT 95836 36 100.0 30 .................................... CAAGAAGCTGAAGCAGGATTACACGCCCGA 95770 36 100.0 30 .................................... AGATAGACTTCTCAAAGCCCAGATGGAGAT 95704 36 100.0 30 .................................... TTTGAATTTAGCAGATTATTCCAGGCTATT 95638 36 100.0 31 .................................... ATTACACGATAGAATTAATGTCCGCTGCATA 95571 36 100.0 30 .................................... GCGAGCTCTTACCTCTTCCTGTGTTTCCTG 95505 36 100.0 30 .................................... TTTATCAATTTTAGAAAATACAGGTGTAAT 95439 36 97.2 30 ...............A.................... CAGACTGTGGGACGGGCTTTTTTTATTTTT 95373 36 100.0 30 .................................... TGCCGTCATTTCTGAATTGTCACAGACTTT 95307 36 100.0 30 .................................... GAAGTCTGTTTTATTAAAGAATTGAACTTT 95241 36 100.0 30 .................................... CTGTTGCCAAGCGTGGAATACAATCATGGC 95175 36 100.0 30 .................................... TGCCGTCATTTCTGAATTGTCACAGACTTT 95109 36 100.0 30 .................................... AAAACACAGACTTTTTGCGAATAAACAGAT 95043 36 100.0 30 .................................... GGGTAGGAAGATAGTTGTTATGGCATTATT 94977 36 100.0 30 .................................... AGTACCATGAAATTGGCTGAGCTGTTGTTG 94911 36 100.0 30 .................................... TGGATATCGATGATGACGGATTGCCGTTTT 94845 36 97.2 30 ...........A........................ GCAAGTGTGGCAAGATTTCCTTGTGATTGT 94779 36 100.0 30 .................................... TCATTGATAGACTTAGCCATTGCAAATGTT 94713 36 94.4 0 ..............................T....T | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTGCAAGTTTATCAATTTTTGAATAAAAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTTTGTTTTGGATAAAGACTATTTCTTACTAATGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : ATACCTACGATATTTTTGGTAATATTTTCTAATTTTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTTCATGCTATAATAGTTATATGAGTTTTTAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACAGCCTACTATTTTGTTAAGGAAATTGGCCGTCGGGTTGCTGAGGAAGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGAGCAGCCTTATTAATGGAGAAAATTGTTGCGGTCAATAGTAAAGATTGCATCTGGATTGTTGATGAATCCAAAGTAGTTGAAACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //