Array 1 156841-158088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPES01000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain SE89N NODE_9_length_235626_cov_63.0356_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156841 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 156902 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 156963 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 157024 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 157085 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 157146 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 157207 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 157268 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 157329 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 157390 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 157451 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 157512 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 157573 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 157634 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 157695 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 157756 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 157817 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 157878 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 157939 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 158000 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 158061 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174249-175516 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPES01000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain SE89N NODE_9_length_235626_cov_63.0356_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 174249 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 174310 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 174371 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 174432 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 174493 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 174554 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 174615 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 174676 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 174737 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 174798 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 174859 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 174920 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 174981 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 175042 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 175121 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 175182 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 175243 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 175304 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 175365 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 175426 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 175487 29 96.6 0 ............T................ | A [175514] ========== ====== ====== ====== ============================= ================================================== ================== 21 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //