Array 1 108950-108188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000014.1 Nocardia farcinica strain BJ06-0126 NODE_14_length_127170_cov_41.051345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108949 29 100.0 32 ............................. CGAGGCAAGTACTGCACGAATCCATGTGCGCA 108888 29 100.0 33 ............................. TCGAACGTGGTGTCGCTCATGCGGATTTGCCTT 108826 29 100.0 32 ............................. GGGTGGGATCTCGGGCCAGGTGGGCGTGCCCG 108765 29 100.0 32 ............................. GCAATGGACGCGCGTAGCCGTGCACCTCACAT 108704 29 100.0 32 ............................. GAGGACTTCCTCGCGCGCAGCCGCTACAACGA 108643 29 100.0 32 ............................. ACAAGATCCAGCTGCGAGCCGTCGACCGTGGT 108582 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 108521 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 108460 29 100.0 32 ............................. GTGTCGAAGGTCTTGACGTGGAGACGGACCCA 108399 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 108338 29 100.0 32 ............................. TCCCCTCTGGAGCCTGGCACGAAACGCTCGGC 108277 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 108216 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCGACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCACCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGCGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117024-116143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000014.1 Nocardia farcinica strain BJ06-0126 NODE_14_length_127170_cov_41.051345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117023 29 100.0 32 ............................. AGCCGCAGCGCGATCACCGGCAAGTGCACCGC 116962 29 100.0 32 ............................. TGTGAGCTTCTACATGCAAGACCTTGACGACG 116901 29 100.0 32 ............................. CCCTACCCGGTGTGGCCGCACGAGACCGTGGA 116840 29 100.0 32 ............................. ATCAGACCGGGACTCCGGCCTTCTCGCAGGCG 116779 29 100.0 32 ............................. GACGCCGCGATGGAAGCGTTCGACCGCGACTA 116718 29 100.0 32 ............................. ACCGGGCAACTGACGGGAAGTGGCAAGCGTCC 116657 29 100.0 32 ............................. TGCCGGAACGGCGGCCCTTCCTTGACGACGAC 116596 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 116535 29 100.0 32 ............................. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 116474 29 100.0 32 ............................. CGCACGGTCGACATCGAGATCCGCGTCAACGG 116413 29 96.6 32 ...............A............. AGATCCACGAACTGACCGGCGCGGTCATCGCT 116352 29 100.0 32 ............................. AAGGCCGCGACCTCGTGATGCCGACACGCGTG 116291 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 116230 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAA 116170 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCAACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 739450-737408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000001.1 Nocardia farcinica strain BJ06-0126 NODE_1_length_884850_cov_41.036429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 739449 29 100.0 32 ............................. GCCTCCCAATACCCGTGGGGTGTTGACGCGTC 739388 29 100.0 32 ............................. GAAGTCTCGCGCTTGTCGCTGTCGGCTCCGGC 739327 29 100.0 32 ............................. CGGTGCGCCCACTGCGCGCGTGCCCGGAACAC 739266 29 100.0 32 ............................. ACCAGGATCGGAGTGAGGAACAAGCTGGCCGC 739205 29 100.0 32 ............................. GCGGCAGAACGCCCCGGCCTAGCTCCAATAGG 739144 29 100.0 32 ............................. GAGCTCAATCCTGCGTTGGGGCCGACCAGGCT 739083 29 100.0 32 ............................. AGTCACATGGCTACGACGCTCGGCACGCTCAA 739022 29 100.0 32 ............................. GACACCGGGACGTTCTCGGTGCCGGTGCCGTT 738961 29 100.0 32 ............................. GCCGGGATCTGATCGACAGCGAGATCCTCGAC 738900 29 100.0 32 ............................. GAATGGCTCGGCTGGAACGACGAGGAGGTGGC 738839 29 100.0 32 ............................. CGATAAATGCGGAAGCTCAAAAAGCCCCTGAC 738778 29 100.0 32 ............................. ACATCGGCCGCGGATGCGCTGCCTCTATCCTG 738717 29 100.0 32 ............................. TCCTCGCCGCGGCATTCAGGGAGCACTGCCCG 738656 29 96.6 32 ............................G CCGTGGCCGAGGCCGGGTGAGCGATTGTGACA 738595 29 100.0 32 ............................. CCGAACGCGCCGAGCTTGTGCGCGCGGCAATC 738534 29 100.0 32 ............................. GCCCACACCGAGTGCGCTGACCCCGGGGGTGC 738473 29 100.0 32 ............................. GCGCCATTGGCCGCATCGGTCAGGGGGCCGAG 738412 29 100.0 32 ............................. CAGGCGGTCGCGATGACCAGGTAGGCGACGCC 738351 29 100.0 32 ............................. TGTACCTGCGCTGCGTTGACCCGGAGACTGCG 738290 29 100.0 32 ............................. ATATCCACGTCGCCGAATCTCATCGCGACGCT 738229 29 100.0 32 ............................. TCGGCGCGCTCGGCGAGGTCTTCGGTCAACGG 738168 29 100.0 32 ............................. GCCAGAACTCAGGCTTGGTGCTGCGGATGCGC 738107 29 100.0 32 ............................. ACCCAGACCGCCGCCATCGCCCGCGCTGACCG 738046 29 100.0 32 ............................. TTCGCGGTCGTCTCGACGCCGTCGACCGAGGT 737985 29 100.0 32 ............................. CCGGTCAGGACCGTCCGGCTCACACGTCCTGC 737924 29 96.6 32 ..............T.............. GAAAAGACCGGCAACACCGCGGTCGCCGTCTT 737863 29 93.1 32 ..............T.......C...... CCGGCTTCTGATCGTGAGGCGGTGTCGGAGAT 737802 29 96.6 32 ..............T.............. GGCAGCTGGCGCATCTGGGCGCGCCAGTGCGG 737741 29 96.6 32 ..............T.............. CGGGCGGCGATGTGTTGCTCCAACCGCTTCAG 737680 29 96.6 32 ..............T.............. GGTCAGTTCGGCCGCGCGGAGGCACGCCCCGG 737619 29 93.1 32 ..............T.............G TACGACCACTTCATGGTGACCGGCCACGTCAA 737558 29 96.6 32 ..............T.............. GGCTCCACGATCTGGAAGCGGCAGGACTTGGC 737497 29 96.6 32 ..............T.............. CGGGGCACTTGGGACCACGTGGATTCAGCCCG 737436 29 89.7 0 .....................GC...T.. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTCGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GACGACAACAACCTATGGGTGTTGTGCGACAGGTGCTCCCGCACGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCGCGCACGTGGAACCGCCTTCTTCGGTCGGGCAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 860630-858421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000001.1 Nocardia farcinica strain BJ06-0126 NODE_1_length_884850_cov_41.036429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 860629 28 100.0 33 ............................ CGCGAGCATCGTCGACGAGGAGCGGCTACGCGG 860568 28 100.0 33 ............................ CTTCCGGGAAGGGTGCAGCTTCGCCAGGATCCA 860507 28 100.0 33 ............................ CTCCCCTCGATGCGCCGCTTGGCAGACGAGTAC 860446 28 100.0 33 ............................ CGACATCAGCATCGGCATCATGCGGGGCGGCGG 860385 28 100.0 33 ............................ CACCTCGACCAAGCTCGAGGTGCTCAAGCGGCA 860324 28 100.0 33 ............................ CCGGGATTCCAGGACTGGAAGGACGCCGACCTG 860263 28 100.0 33 ............................ CAGAACGCCGCCTGACCGCGAACCCCACTCAAC 860202 28 100.0 34 ............................ CAGGGGCGTCACCACGTACAGGACGGCGCTGAGC 860140 28 100.0 33 ............................ CCGTGGGGCCTCATGCACCTCGACCGGCCGGAA 860079 28 100.0 33 ............................ CTGCACCGCCGAGACGTCGCCGAGCGCAAACAC 860018 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 859957 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 859896 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 859835 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 859774 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 859713 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 859652 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 859591 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 859530 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 859469 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 859408 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 859346 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 859285 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 859224 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 859163 28 100.0 33 ............................ CTGGTCGTGAGCGCCTTCTTGATAGCGCTGGGC 859102 28 96.4 33 .................T.......... CCCGTTCCTCACCGACGCAGCGCACGAGGAAAT 859041 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 858981 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 858920 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 858858 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC A [858837] 858796 27 96.4 33 .................-.......... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 858736 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 858675 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 858449 28 71.4 0 ...G..TG.....CG.TC..A....... | G [858422] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 34 28 98.9 38 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGTTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 870316-869784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000001.1 Nocardia farcinica strain BJ06-0126 NODE_1_length_884850_cov_41.036429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 870315 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 870254 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 870193 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 870132 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 870071 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 870010 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 869949 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 869888 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC T,C [869860,869879] 869811 28 72.4 0 A.......G..AC.T..C..-.C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 882953-881336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000001.1 Nocardia farcinica strain BJ06-0126 NODE_1_length_884850_cov_41.036429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 882952 29 100.0 32 ............................. CGGTTCCTCGAAGTCGACTACGCGCCCCGGGA 882891 29 100.0 32 ............................. GGGAACGTTCGTCTCGGGTCGTAGCTCCCACT 882830 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 882769 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 882708 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 882647 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 882586 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 882525 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 882464 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 882403 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 882342 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 882281 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 882220 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 882159 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 882098 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 882037 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 881975 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 881914 29 100.0 32 ............................. CGGCTCACGATCGGCATCGAGGCCGAGAACAA 881853 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 881791 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 881730 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 881669 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 881608 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 881547 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 881486 29 93.1 32 ................C...A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 881425 29 96.6 32 ................C............ CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 881364 29 86.2 0 C...............C...A..T..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.9 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GAGAAGCTGATCGTCGCCGACCTCTTCACGCTGTGCTCCCCGCGCATGCTGCGTCGCGGCCGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 284-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000055.1 Nocardia farcinica strain BJ06-0126 NODE_55_length_309_cov_0.373626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283 29 100.0 32 ............................. GAGCTCAATCCTGCGTTGGGGCCGACCAGGCT 222 29 100.0 32 ............................. CGTCACATGGCTACGACGCTCGGCACGCTCAA 161 29 100.0 32 ............................. GACACCGGGACGTTCTCGGTGCCGGTGCGGTT 100 29 100.0 32 ............................. GCCGGGATCTGATCGACAGCGAGATCCTCGAC 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAACGCCCCGGCCTAGCTCCAATAG # Right flank : CGAATGGCTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3764-4036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000015.1 Nocardia farcinica strain BJ06-0126 NODE_15_length_119900_cov_40.731617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3764 29 79.3 32 A.GAT......GT................ GGCAACTCGACATCGATCCGCTCACCGCCAGC 3825 29 100.0 32 ............................. GTCGCGCTCGGGCTGTACGAGTACAGCCGCCG 3886 29 100.0 32 ............................. GCCACGGCGTCGGCCCATTCCTCGGGTCGGTG 3947 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 4008 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCGCAGGATCATCTGGCGACTGGACTGCTTGCTGGGGCTGATCAGCGGATTGCCGACGCACCACGCGGCCGGTGCCGTGACGGCATACACTCCGAGCCCGGTGGTGGTCTGGTCGAGTTTCCAGTTGCCTAAGGCGCCAGAGGTGGGTTGTTGGTTGAGGACCACGAGCGCGGCGTCACAGTCGGCGGCACGAACGAAGTCTGTGATCAGCCGCCGCGCTCCGGCGACGGCATCGAGGTTGGTAAATCGGGTGATGCGGGCTCGGGCGACGGTCAACACCTTCCGACCCGATCCATCGTTCGGTCAACGGAGAACGAGTAGCGGGTACCAGGGTATTTGGCAGCGACCGGGCTGCCTGCCACACCCCTCCAGCGAGGGATGATCCCCGCGTGCGCGGGGCCGACTGATCGAGGAAGCGAAGGCCGTCGAGGCGCTGGGGATGATCCCCGCGTGCGCGGGGCCGACCATTACACGGAAGATAATTGAGATGGGGCGATTGG # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTTAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCCGCATACGTTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCCGCATCAAGCAATCCGGCCTCGGCCGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGCGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCTGACGCGGGATGAGCAAGGGGGGAGTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACCCCAGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67917-68676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPX010000018.1 Nocardia farcinica strain BJ06-0126 NODE_18_length_70004_cov_40.362380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 67917 28 100.0 33 ............................ GTACCGCGAAGCCCTGGCCGATTGGGAAGTCCT 67978 28 100.0 33 ............................ CAGCGGCACGCCGCGGTGGGGAACCACCGAACA 68039 28 100.0 33 ............................ CACCCGCTCCTGCTCCGGTCCGTCCGTGGAGTA 68100 28 100.0 33 ............................ CGGCGGCAACGGCGGCAACGGAATCGCCTACAT 68161 28 100.0 34 ............................ CCCCGCCAGGTCGTTTTCGTGCCAGCGGGTTTGG 68223 28 100.0 33 ............................ GAGCTGGCAGAAGAAGGCTGATCAGGAGGCGCG 68284 28 100.0 33 ............................ CCGGATCGCCAAGGGCGTGAAGGTGTGCGACGA 68345 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 68406 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 68467 28 100.0 33 ............................ TCCTGCCACGCAAGCGCGGCGCTACACCGTGCG 68528 28 100.0 33 ............................ GGTACGACGAAGGCCAGCCCGGCGAACGGGCTG 68589 27 96.4 33 ....-....................... CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 68649 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.2 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGTCGAGTTGCCGTGCCCGCCGGGGTCTGATTCTCACCACAGGCGGTGGGGCCGATGTTGTGGGGTCGGGTAGCTTCTGGATCAGGTTTTCCAGGGCTTCCGCCTGCGTTTCAGGGCTTCTACCTGCGCTTTTAGGGTTGTAGTAAGGTCCCCCAAGGTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGTGATGACGGGGTGACGTTGGAGCAGGTCGCCGCGGATTTCGGGATCCACCCGATGACGCTGTCGAAATGGATGCGGCAAACCGATGTCGACGATGGTGTGAAACCGGGCATGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //