Array 1 217694-216623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWJ010000001.1 Listeria seeligeri strain FSL L7-0802 NODE_1_length_441953_cov_50.632424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 217693 29 100.0 36 ............................. ACTGTAGTTGTGAATGACCAGTTGCTAAAATCCCGA 217628 29 100.0 38 ............................. ACAAAGAAGTTCCGGGCGACACAAGTATGGGACTGGCT 217561 29 100.0 36 ............................. AAAATTATTGACGCAGGTGTGAAGCTTATATTTGCG 217496 29 100.0 37 ............................. CTAAGTCCTTGCGATTATCCGGTAGCGGAAGTATAAA 217430 29 100.0 36 ............................. ACATATGTTTTTTCATGTTAGAATCCATGAAGCATT 217365 29 100.0 35 ............................. ATCTTCAAAGGTCAAGAAGTTGCCGACATCTCCAA 217301 29 100.0 37 ............................. CATATGATTATCATGAATCAGGATTTAAGAGATGTAA 217235 29 100.0 34 ............................. AAAAATAACCATCTGATCCACTTTAGCGAGCTGA 217172 29 100.0 34 ............................. ACGGGTCTAACACGCCATGACTATTTTTATCATC 217109 29 100.0 35 ............................. CATGGATTTACTATGTGGGATTCTATCTTGTTAAT 217045 29 100.0 36 ............................. TGGAGCGAAAAAGAAGATGAGTTTATCAAAAAATAT 216980 29 100.0 36 ............................. TTGGCTAAACTAATCAATCCGTGGTTCGTATCTCTC 216915 29 100.0 38 ............................. TTGATAGCTCCTACCAAACCCGCTATTTTAGAATAAAC 216848 29 100.0 36 ............................. ATGATAAATCTCCCTCACTGAATCGAGGAAGATTAT 216783 29 100.0 36 ............................. ATATTATCAATTAACGCCATCACAATAGCAATTATC 216718 29 100.0 38 ............................. TAAGAACCGTTGACACCTGTGCTTGAGTAACCTAAACC 216651 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGCATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 227894-226322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWJ010000001.1 Listeria seeligeri strain FSL L7-0802 NODE_1_length_441953_cov_50.632424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 227893 29 100.0 34 ............................. TTTTCAATATATAAACTTTATAATCAGCCTTCAA 227830 29 100.0 35 ............................. ACGATAGCATAAGCAAGAGCCTTATTTTTGTCGGT 227766 29 100.0 36 ............................. ACATCATTTAGAAATCATGTTGCGCGAGAAACCAGC 227701 29 100.0 34 ............................. TTCTGTCCTTTGCCTTTTTGACAATAGAGTCCCA 227638 29 100.0 39 ............................. AGTAGTATACTTATCGTAAACGGCTTTGGGTTTTAGTCC 227570 29 100.0 36 ............................. AAAAAAATATTGTCCTCGGAAATGTGATATAGTTCT 227505 29 100.0 36 ............................. ACTTAACAAGTCCTACCTTAACGGAGACTATTCACC 227440 29 100.0 37 ............................. TTGGTTGTCACTCCTATATACCGATTTGTTAGTTTTT 227374 29 100.0 35 ............................. GCGTTTAGTTTGTCAAATGTAGATCAAACAACAGC 227310 29 100.0 34 ............................. ACAGTCAAATAATTTATGAAGTCGCATTTCATGA 227247 29 100.0 38 ............................. AAAGCAGTTGAAAATGCTAGCTCTGAATATAAATCAGA 227180 29 100.0 34 ............................. GCTGATATGCTATGACATCGCCTAAAATGAGTTC 227117 29 100.0 34 ............................. CCAGATTCAGAAATGACCTGTACTGAATCGTTGA 227054 29 100.0 35 ............................. GTTTTTTGTAATGCCATTTAACTTTCTCTCCTTTC 226990 29 100.0 36 ............................. AATCAAAGTTGATATTGACCCCCAGACCAGACCAGT 226925 29 100.0 36 ............................. ATGCCACTCACATCTTGATTTATATCGCTCGATACT 226860 29 100.0 35 ............................. TACCATGCGTAAGTATTTCCTTCTGTATAGCCGCC 226796 29 100.0 34 ............................. ATAAAAAATGGAAAAGAGGAAAAACAATGACAAC 226733 29 100.0 34 ............................. CAATACCAGAAAAAGCACTAGACATTTTCCTAGT 226670 29 100.0 34 ............................. CTCGCTATCGTATTTGCTACTCTATTGTTCTGTA 226607 29 100.0 35 ............................. ACTTTTCTGGAGTCAGTACAACAGACTCTTCTTTC 226543 29 100.0 34 ............................. TCGCTTTCAACAACATGACCATGCCCACGCTTTT 226480 29 96.6 37 .................C........... ACTGTATTATACAGGAGCTCGTATAGGCGAAATAACG 226414 29 96.6 34 ........................C.... TATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 226351 29 86.2 0 ........C....C..A...........G | T [226324] ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.2 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 234659-234115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWJ010000001.1 Listeria seeligeri strain FSL L7-0802 NODE_1_length_441953_cov_50.632424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 234658 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 234592 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 234529 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 234465 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 234401 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 234335 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 234272 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 234208 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 234143 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //