Array 1 1562294-1560526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031514.1 Chromobacterium sp. Rain0013 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1562293 28 100.0 32 ............................ TCAGCGTGTTTAATAGAATTTTCAAATATAAG 1562233 28 100.0 32 ............................ TGTCGAAGCGATAGCCTGTTGGGCGGGATTGG 1562173 28 100.0 32 ............................ TGATGGCAACCTCGAAGCGTTGTACAACATTC 1562113 28 100.0 32 ............................ TGACACGCGGGCCTATGATCTACACGATGGTG 1562053 28 100.0 32 ............................ CATTCAATCCGCGTGGAACCATGCGGCCACCA 1561993 28 100.0 32 ............................ TTCGGCGTGTCAGGGCTACCTCCTGCTGTCGC 1561933 28 100.0 32 ............................ GCCCACTCTCGATCAAGCTGCGACTCATGAAA 1561873 28 100.0 32 ............................ AGTTCGCCGCTCTGGCAATGTCACGCCTCGCT 1561813 28 100.0 32 ............................ AAACCCCTTTAATTCCACCTGGGTACTTCTGC 1561753 28 100.0 32 ............................ ATTTGAGCGTGGCGCATGGCGCCGCCGTTGCA 1561693 28 100.0 32 ............................ AGTTCCTGGATCTGCTGCAAGACGAGGCCAGC 1561633 28 100.0 32 ............................ AGCCCCCAGTTTGCCGCAAACAACGGAAAAGG 1561573 28 100.0 32 ............................ CAAACGATAACAGGAGAAAAAACATTTTCTCA 1561513 28 100.0 32 ............................ GCTGAGGATGGAGGCACTCGAGTAGTTCCAAG 1561453 28 100.0 32 ............................ ACCCACCCTAAATGCTCCTTGCCATAATCCGT 1561393 28 100.0 32 ............................ GCCTGCGGTGACTGCGGTTTCGATATATGAGG 1561333 28 100.0 32 ............................ TTGAAGAGGTCGAAAGGAGGGGGGCTGGTGAC 1561273 28 100.0 32 ............................ ACCAAAGCTCAGATGACCATAGCAAACATCTT 1561213 28 100.0 32 ............................ GTGCGGGCGGCTGGTTGATTGGTGCGCCGGGA 1561153 28 100.0 32 ............................ TGCAGGCTGGCGGTATGGCTGCCGACCGTGGT 1561093 28 100.0 32 ............................ ACTAAGTTGTTTGTGGAGGTGCAACTGAATGA 1561033 28 100.0 32 ............................ TTTGCGAGCGTGATTTGCGACTTGTACGGGTA 1560973 28 100.0 32 ............................ ACCGGCAACTCAGCGACTTCATAGCCAACGCC 1560913 28 100.0 32 ............................ ATTCTCGCCAACAAGCTGAACCCCAACTGCGA 1560853 28 100.0 32 ............................ TGGGTGCTGCGGATCTCGTCCGCCGTCAGCAT 1560793 28 100.0 32 ............................ AAATATCAATGCCTGTGTGGCGATGGGTTTCA 1560733 28 100.0 32 ............................ TACCATGATCGGCGTCGGGTTGGCGATGACAT 1560673 28 100.0 32 ............................ TGCCACGGCAGTCACCGCTGTCCTGGTGGTGG 1560613 28 100.0 32 ............................ TGGCCGGTAGATGGCGCGCAGCCCGGCAAGCG 1560553 28 92.9 0 ..................C..C...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.8 32 GTTCTCTGCCGGATAGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCTGGTGCCGCCTCAGGCGGAAGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTAACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGTTGCACATCGAGCAACGCCCGGCCCCAGCCACCCGCAGCGGCCGCTTCAACACCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTCCCAGCCCCGCCGCCAAGCCTTTTAAATCAATGCCTTGGCGCGGGGCGGGATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCGGCTGGCGCGGGTTTGCGGGAGAAAGGGTCTA # Right flank : GGCTCCCCAACCCCTCCCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATTTTGTTTTCCAAAATCAAGAAAGGGCCGGCCCAGCCGGCGTTCCACGATGGCATATCCACATTTCACTCTCTCCGCGCTGGCGCTGGCCTTGGCAGGGCAAGCCTTGCCGGTACTGGCCAGCGACGGCAACACGCTGGACAGCGTCACTATCACCGGTTCGCGCATTGCGCGCGCCGGCAAGGAAGGCGCCACCGGGGTCACGGTGTTGACCGGGGCCGATATCGAAAAACAGGGTTACACCAATGTTTACGACGCGCTGAACAATCTGGCGCAGAACACCGGCTTCACTCAGGGCGCGGATTTCGGAAATACCTTCACCCCGGCCGCCAACGCCATCAGCCTGCGCGGACTGGGCCCCAACCATACGCTGACCTTGCTCAACGGCCGCCGCATCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1574179-1572049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031514.1 Chromobacterium sp. Rain0013 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1574178 28 100.0 32 ............................ GTCCCGACTATCAAGAAAGCATGCTCTTACGC 1574118 28 100.0 32 ............................ ATCGCAGGCTTACAACGATTGGAAAAATATTT 1574058 28 100.0 32 ............................ AGTCGAATCGCCCATTCAGCGGATGCTCTATC 1573998 28 100.0 32 ............................ ATCCGGCCCCTGAAGTCCATCACCGAGGCCGC 1573938 28 100.0 32 ............................ ACGCTCCGGAAAGTCTTACGAATCGACTGTTT 1573878 28 100.0 32 ............................ ATGCCGTCCAGCACCAGCACACAGGGCACCGG 1573818 28 100.0 32 ............................ CTGTCGCCGGCGGTCTGCTGTTGCCCGTCGCA 1573758 28 100.0 32 ............................ TTGAAGGTAATGGCCGATGGAGAGCTCGTGCT 1573698 28 100.0 32 ............................ TTGGTAAACCACTGACCACGCATGGTTCTCCA 1573638 28 100.0 32 ............................ CACTTTAAAACCTGAGCCGCATGCGCCCCAAA 1573578 28 100.0 32 ............................ AAAACCAGAGAAGAAGGCAAAGAAAAATACTA 1573518 28 100.0 33 ............................ AGCGTCAGGCCAAGAGCCTTGTCTTTCAGAAAT 1573457 28 100.0 32 ............................ TGCCGGCGGCGGGTACTGATTACGCGAAAACG 1573397 28 100.0 32 ............................ ATCCACACCCCCGTGGCCAAGCTGATCCAGCC 1573337 28 100.0 32 ............................ TTACGCAGCCATTTGAAGCCGGCAATGCCAAC 1573277 28 100.0 32 ............................ AGGCCTCGACCTGTACGTGATGCAGCCCGGGT 1573217 28 100.0 32 ............................ GCTGCCGACGCCTGATCCGAATAGCAGGCATA 1573157 28 100.0 32 ............................ ACGTACAGGTCGAGGCCTGGCCGATGCAGTCC 1573097 28 100.0 32 ............................ GTTATGGTAACGAATAATGGAAGTTATTTAAT 1573037 28 100.0 32 ............................ GTGAGAGAAAAAAAGATAGGGTGCAGATAGAT 1572977 28 100.0 32 ............................ CATAGCGCTCTCACGTGCTCGCTTCCGTAGCC 1572917 28 100.0 32 ............................ TTAAAGTGCCCTCCTACTCTCTGTGCATATAT 1572857 28 100.0 32 ............................ GGCTTGTTGATTATTGATGAAGGTCTGTTCTG 1572797 28 100.0 32 ............................ TCGATACACTCACGAACGAAGTCACGCAAACC 1572737 28 100.0 32 ............................ AGAAATCAACACCGGTATGGCGGTGCGTTTCA 1572677 28 100.0 33 ............................ AACTTGGAACCACTCGTGCACTGCCATCTTCAG 1572616 28 92.9 33 A...T....................... ACACCGAAGTGATCCAGCCAGCCCCGGATGAAT 1572555 28 100.0 32 ............................ AAAAAGTAAGGGCCGCGTGAGCGACCCATCGA 1572495 28 100.0 32 ............................ ACCCCAGGCGTCCGATCCGGCTGCGTTAAACT 1572435 28 100.0 32 ............................ TCTTGCTCAATGCGGATATGAAGCATGTCAGT 1572375 28 100.0 32 ............................ TCGCCAATATATTTGTCCAAGATTTTCAACTG 1572315 28 100.0 32 ............................ AGCCTCTGCGCGTCTAATCACGAACTGCAACA 1572255 28 100.0 32 ............................ AAGCAAGAACTATTCGTCCGCGAATACTTAGT 1572195 28 100.0 32 ............................ GCCGGCTGATGTCGGACAAGCTGTTCCCGCTG 1572135 28 100.0 31 ............................ AGACAGCAAGCTAGCCGTATTGTCGGGCATG 1572076 28 82.1 0 .C....G....A...A..C......... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAACCCACCATCACCCCGGCCTTGGCCAATTCCCGCATTGCAGCCTGCGTCACTGAAGTGCCGGTGCCCAGCAGGATGCAAGTGGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACGCGGCAGTGCTGCAGATAGTAAAGGTTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGTCATACCTATGGGATGTGACGCGATAACACATCTTGCCATGAGCATGAACGGAGGAACAGGCAGCGCGGTAAAACCCTTTTTTTCAGGCCCCTCATCAGCCCCAGTAAAAACAACCACTTAGCCTTTGTCTGAAAATTTGGGTCAAACCCGGAAAAATCGCCGCAGATGCCTACGCCATAAGGCGAGGGGGCGGTGTAAACTCTA # Right flank : ACCGAGGCGGGGTCATTCAAGCTGCTATGTACTTGAAGACGAGCACAGCAAGAATCGGGTCGTCCACAAGGGCGCGCCGCCATAGACTTCGAGCATTTCAATGTTACGAAGGAGAGCGACATGGCTTGGCAACTGGAAACCCTGGACCCGGCTTTCGTCGAGCGGGCACGACACAAAGGAATTGATGCGCTCGGCCAAACCATCCAACGGATGACGGCCGCTGGCGGCGAACCCTTCCGCGACGCGCTGCGCCGCGCCACTCCGGGAGAGGGGCTGATTCTGGCGAGCTACAGCCCATTCCACCAAGCCGGGCCATACCGCGAGTATGGTCCGGTTTTCCTGGCGGCTGAATCACAGCCAGAACCTCTGCCCGAGCTGTCGTCGCTACTGCTCCGCGTCGGTGGGAATGCCTACCTTGGCGACAGCGTGGCGCTGCGCGCTTACGGCAAAGAACAGACCATGCTGGAAGCCGCATTGCTGCCAACACATCAGGTGGAGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //