Array 1 1718049-1718768 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIA01000002.1 Micromonospora yangpuensis strain DSM 45577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================== ================== 1718049 28 100.0 33 ............................ CGGCTTGACGGTCGGATGCGCCACCCCGTCGAC 1718110 28 100.0 33 ............................ CGGCTTGACGGTCGGATGCGCCACCCCGTCGAC 1718171 28 100.0 33 ............................ CTGCCCGCTCCACCCTGGCCAGAACGGCCGGGT 1718232 28 100.0 33 ............................ GGTGGCGTCGGTGGGCACCCAGCCTGCGGCTTG 1718293 28 100.0 33 ............................ GTTCAACTCGGCCTCGGGTCTGGTGGCGAACCA 1718354 28 100.0 33 ............................ GGCCTCGGACTGGATCCGATGGCGCTCATCCTC 1718415 28 100.0 33 ............................ CTCCACCTGGTCGAAGCCGACCGACGTCTCCGG 1718476 28 100.0 33 ............................ CGGTCAGCGAGGCGCGGAGTCGCCGGACCCAGT 1718537 28 100.0 53 ............................ GGCGATTACGCGCGGGTCCTTGCTGGCACTGGCCTCTTCCCCGCCCGCGCTAC 1718618 28 100.0 33 ............................ CGGACATAGGGGGGATACCCCGCCCCCGGGCCG C [1718628] 1718680 28 100.0 33 ............................ CCCGGTGGACGTCAGCTACCGGCTCTCGCCCGC 1718741 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ===================================================== ================== 12 28 99.7 35 CTCTTCCCCGCCCACGCGGGGGTGATCC # Left flank : GCGTGACGGGCACGTCGGCGCGCCTCACCTCCCGAAGACGCCCATCGCGTTGACGATCCCCATCCGTCAGGACTGCCTCCACCCCGCCATCGGGGGCAACTTCCTTGTTGTAGTGGTCTCGGGGGTGCTCGTGGGGACTGTTTCCCGGTTGTTGTGGGGCATCCGTGACGGCAGATTCCCCTGGCTGCTACTTGGCGTCACACCCGTGACGTGTCGGATCCGGAAGCTGCGCTCGTTCCCGGCCGGCCGCGCGGCAGTACGAGGTGAGCCGGCGCAGTCGTCCCTGCGGCCCGCTCCTTCCCAAGGACGAGGGACCGATTGAGGATCGTCAGGGCGAAGCGTGTGTGCCGTCGGCTACTCGTCCCCAGTAATGTGGTGAGTTCGCGGCCGGCCTTCCGGTCTTCTGCAGCCTGTCACCACGGTTGACCTAGGAGGCGATCTTGGGCAGCAAAGTGAATGAAAACGAGGAACTTGATCTTTAGCGCCCCAGGTCAGGAAGC # Right flank : CCGCCTCTGCAGGGCCGGTCGTTATGGGGTCAGGCCGATCAGCATCGCCAGGCGGGTCACGCCGGCCACCGCCGGGCCGTCCCGGGCGATCCGGGCCAGCAGGGTACGGCCCACCGGTCGGCACCGGACCTCGGTCGGCGCGGTCCGGTCCGCCTCGACCAGCATCCGCCCTGCTCCGGCGAGGTCACCCAGATCCAGGTACGCCCGTGCCATATCGAGCAGGTACGCGGCCCGGTGCTCGGGCGGCAGCCGCTGCCAGTGAGGCTCCCTGGTTACCTGCTCGTGGCCGCGTACCGCCTCGGCGGGCTCGCCCAGCTCGACGGCCGCCGCCACTCGGGCCAGCGCCACCACGGTCGGTCCGAACGCGAGCTGATGGTGGTCGTCGCCGTCGCCGAGGCGTACCGCGATCTCGGTGGCTTGCCCGACCAGCTCCGCGACGCCGCGCGGGTCACTGCGACCGGCGGCGGCGAGGGCGGCCTGGAGCAGCAGCGACCCACCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCCCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2854761-2854201 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIA01000002.1 Micromonospora yangpuensis strain DSM 45577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2854760 30 100.0 35 .............................. ATGTCGGAGACCAGGGCGCTCGCCAGATTCTCGAC 2854695 30 100.0 37 .............................. GTGGCCCAGAGCTGGCCGTGGGCGGGCACCGCGTCGA 2854628 30 100.0 37 .............................. GTGGCCCAGAGCTGGCCGTGGGCGGGCACCGCGTCGA 2854561 30 100.0 36 .............................. AAATCGTAGGAGGGGTCGGCCCCGTCCAGGTCGAGG 2854495 30 100.0 37 .............................. ACGTAGAGCTTCGTGGCCCCGATCGGCTGCTGCGTAC 2854428 30 100.0 36 .............................. GTGTGCTCCGGGTCCCATCCCCAGGGGGTGCGGCAG 2854362 30 100.0 35 .............................. CCGTGCCCTCCGACGGCGTGCCTCGTGCCGTACGT 2854297 30 100.0 37 .............................. GCTGCGTCCTGGCTGGCCTCAGCGTGATCTACCACCA 2854230 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTCGCTCATCGTCCCTGGAGGGATCGCAAC # Left flank : GAACACGACGGTTCTGGTATCCCGCGCCAGGAAAACGTAGCAAGCCCACCGGTTCACCTCGCCAGCAGCGCGACGGGTTGTCGGTTAGTCGACAGAGGCTGCTGCGGTGTTGATCCAGCCGGCATGATCCAGCTTCGTGAGGGGGCGATGCAGGTCGCCACCTACCGGCCGGCAGTTCACGAGCGCACGACGAGAGCCAACCCGAGCGCCCACGTTTCGACGCTCACCGAGCAGAGAAGATCGGGTACGGCCACTTCCCGGTGATCACCAATGCCGCATCGTCATCAGTCCATCGCTGTTCTGCCACCCTCGGCGTCGGCAGTGAAGGTCCAATTGGGCGGAGGTTGGCCGGCGGCGCCCCGGACGGCTTGGGGTTCCACCTGACCGGACTCACCTTGGTCAGCGCTCTCACCAGCACAGATGCACAACCGCCGGTCCGCTGCAAAAATGGCACCAGCAGGCGCATCGACACCTACCCTGACCTGCAACTTAAGGTTCGG # Right flank : GGTCATCTCGGCGAGCGGTTCCCGGCGGTGGCTCGTCGCTCATCGTCCGGGCTACCCTGCCCGGAGGGTGAGCAGGGTGATCTCGCTCGGCGCGAAGATCCGGAATGGCGGACCCCAGAAACCGGTGCCCCGGCTCGTGTAGAGCTGGGTCCTGCCGTGCCGGCTGAGGCCCTGCACGACCGGCTGGTCGAGCCGGACCAGGTAGTGGAATGGCCACATCTGGCCGCCGTGGGTGTGCCCGGACAGCTGTAAATCCACACCGGCCGCGACCGCGTCGTCGATCTGCTTCGGCTGGTGCGCCAGCAGCAGCACGGGCAGCCGCGGATCGGTGCCGGCGAGCGCCGCGGCGTGGTCGGCGCGGTGACCGGCGACGCCGGACGAGGCGGCGGTCACGTCGTCCACCCCGGCGACGACGAGCCGGGCACCGTCCCGCTCGACCACCAGGTGCCGGTTGTGCAGGGGCTCCCAGCCGAGGGTCCGCATGTGGTCCACCCAGCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCGTCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 3731467-3733081 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIA01000002.1 Micromonospora yangpuensis strain DSM 45577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3731467 28 100.0 33 ............................ TTCGTCTCCACCGTGGCCAGTGCCAACCGCAAC 3731528 28 100.0 33 ............................ CGGCCGGACGGGCAGGGCCAATCCGAAGGCGAT 3731589 28 100.0 33 ............................ GGAACTGGACTTCGCGGTCACGCAGGGCAAGGT 3731650 28 100.0 33 ............................ TGTGGTCAGACGGTCAGCCGATCAGGGCGTCGA 3731711 28 100.0 33 ............................ TGCGCAGGCGGTATTCCGGGAGCGCGTCCCTCA 3731772 28 100.0 33 ............................ TCCGGGCGGAGCTGGACGCGGTCTACCCGGAGT 3731833 28 100.0 33 ............................ CTACGTCTCACCCGCTGCCGGCGTCTCGCTGGC 3731894 28 100.0 33 ............................ CGGCACATGCCAACGGGAGGGATGACCATGGAT 3731955 28 100.0 33 ............................ CAGCAGCTGCCTGTTGGCGGACATCCCGAAACG 3732016 28 100.0 33 ............................ CACGGGCCGCGCGGGCCGGTCGGCCAGGGAGAG 3732077 28 100.0 33 ............................ CGCCCAGCACGGTGCCGCGATGGTGCAAGCAGT 3732138 28 100.0 33 ............................ CTGGGCGTCCGGTTAAACTGCCCCCGATTGAGA 3732199 28 100.0 33 ............................ CGGTGTTTCTACGGGCCAGTCGGTGGCGGGTGC 3732260 28 100.0 33 ............................ CGGGCGCAGTAGACCCAACCGTTGGTGCTTGCT 3732321 28 100.0 33 ............................ CTTTGCCAGTTCCTCCCCGGATCGGTGGAGCGC 3732382 28 100.0 33 ............................ CCACCTCCGCCGACAGACCCAGGAGGGCCACCG 3732443 28 100.0 33 ............................ CGAGCGCACCAGAAGCTCTTCGGTGTCCTCGTC 3732504 28 100.0 33 ............................ GCGCCAGAGCCGCCTTCCTCCCGGCCTTGATCG 3732565 28 100.0 33 ............................ GGGGCCGGGCGGTATGGACAGACTGCTCGCCGA 3732626 28 100.0 33 ............................ GGACTGGCAGCATCCGCGCCCCCGGGGTCGGGG 3732687 28 100.0 34 ............................ GGAACCGTGAGCGACGTGGTCGAAGACCTGGGAT 3732749 28 100.0 33 ............................ GGCACCGGCGACCTGGACATGCTGGAGCCGATC 3732810 28 96.4 33 .....T...................... CGGGTCACACACCAGCCGCCGGTACGGCAAGTC 3732871 28 89.3 33 .........A....C.........G... CGTGGCGACCTGGATGGTGGCCATCGCCCTGGA 3732932 28 89.3 33 .............GCT............ CGTCGCGCAGCTGGCGTCGCCGACCACGTGAAT 3732993 28 85.7 33 ............T.C.T.......T... CCCGACGCTGCCGTCCACCGGGTCGTGCACGTC 3733054 28 85.7 0 G...........T.G.........G... | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GAACGCTTCATCCCGGAACAGCTCCTCCCCAGTAGGAGCCCCACTCGGGAAGCACTCGTCGCCGAGCACCAGCAGACGGTCAGCGACGTTTCGGCACCTGGAACGGTCCCCCCTTGCTCCCCGAACGACCCGGACCACCCCCGCGTACGCGGCGCAGGCACCACGCGCAGTGCTAATCGAAGATCTCGCACCGATCACCGCCGACACGTGACCTACAGGTGAATCTTGGACACTTATCTGGGGCCGTCGGGGGGCGACGGGCGCAAGATCGCGGATGGCAAGCGCGTACGCCAGGCCACGGGCCGGCCGAAAACTCTTCGGGTCACACCACAAGCGAGTCGACCGCCGCCCGGGCGTCGGCTGTGCCGGAAAGCCCACCGGTACGCTGAGCCCACCCGCACGCCCCACCTGCCCGACACCCGAGGGACTGCATGGCGATCCTCAGAACCAAAGTGAACGAAAACGAGGAAGTTGATCTCTAGCGCCCCAGGTCAAGAAGT # Right flank : CCGTTGACGCTGCTCAGAGACGGCGGATGTTGATCTCCACGGTGGCGTTGGCGGGGCTGCCGAAGGCGTCGAAGGAGGTCGGCTCGGCGCGGCCCGACTCGAACTGCCGCACCAGCCGGGAGCCCAACCAGACGCCCACTGCGCCGACGGCCAGCGCGGCCACCTCGACCGCCAGCAGCATCGGCGAGACGCTCCGCTGTGGCGCGGCGGCCCGGATCAGGCAGGTGAGCAGGAACAGCCCGGCCATGGCGGCGTTGACCAGGTTGAAGGTCAGCGCCGTCCGGCGGGTCGCGTCACCTGGTACGTCCCAGAGGTCGACCATGCCGGCGATCACCGTCAGCGCGGCGGCGACCAGGGCGGCGACGGTGGTCCAGTAGCCCACCTCGCCGAGGAACGCCGGGCCACCGGCCACATCGGCCAGGTCGAAGACGGTCGCGCTGACGAACAACCCGAACGGGAACGTCACCAGCATCGGTTGGATCGGATGACCGTGCACCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //