Array 1 665960-666660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079201.1 Rothia dentocariosa strain LPB0409 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 665960 29 96.6 32 ............................T ACGAAGAAGACAGACCCGAAGCTATTCCGTTT 666021 29 96.6 32 ............................G TCATGCTTACGTTCCTGTACCAAATCCCGCAA 666082 29 96.6 32 ............................G ATTCGCCGCGTGACGATACCGAGAACTTGTAC 666143 29 100.0 32 ............................. GTAGTGTGCCAAATAATCTTTGCCATTGACAC 666204 29 100.0 32 ............................. TGTTCCGGCAAATTAAGTGCCTCTAGCGCTTC 666265 29 100.0 32 ............................. CGTGGCATCCTGATCCCAAACTCCGCCACCCA 666326 29 96.6 32 A............................ GAAACCACATGTATTTATGGTTCCATGTGTTT 666387 29 100.0 32 ............................. CGGTGAATATATCGCTATCGCCGGGGGGTGTT 666448 29 100.0 33 ............................. CGGGTGGTGACCTGTGAAGAAATCTTTGAGCTT 666510 29 100.0 32 ............................. GGCAGACTTGCAGGAGATAGCACGCAAGGCAG 666571 29 96.6 32 ............................T TCTTGTTGAATAATCCGCTTCGCCTCAAGAAA 666632 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Left flank : GGGGAAGAATGTTGCCCAAAAGTCTGGGTTGAACCGGGTAGTTTTGGATGCGGCATTCGGCGTGTTCCGTAACCAGCTGGAGTATAAGGCTGTCTGGTATGGTTCTGCGTTTGAGAAGGTTGACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGTGGGAGGAAAGCGAAAACCAAGCTGACTCTGCGCGACCGTGTCTTCGACTGTGCGTACTGTGGGAATATGATGGATCGTGATCTTAACGCGGCCGTCAATATTTGCCGTGAGGCGCAGAGGCTTTTTGACGAAAAACTCGCCTCAGAAGATAGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCTCTTCGGGGTGCTGAGACTGTGGAAGCGTCAAGACCACCTGCGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCATCTGCCCATCTATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGTGGGCGTTATACCTAGTCAGCAAGT # Right flank : CGGTTCCCACAAATTCTTGGTCTTCTTCAGACCATTCGACGCGGTATGTGTATAGTTCTTCCCGAGGAATAGACATTTTATTCTGCCTCCAATTTCTTACAAAGCAGTTTTGTTTGCTTCTATATGCGTATCTGGAAATGTAGATAATTGCAGAGGGTGGAGTATGCGCGCGGTATAGGGTAAGGTAGTAGCAATACGAGTGAGCACCCAGGTTCGCTAAAACTCTGAGTGACCACCCTGTGAGGACGTTATACTAGCCAGCGGCTAATAGCGTCGACTAACTTAGCGACCGCCTAGATGAATCGTGAACCTGCCTCAACAAGTCGCACGATCGTCCGGGCGGTTTCGCGTTAAAGCTGCACCGCCATTTCGTGCTCAACCAGACACAGCCCAAAGGACTGGTCCACCTTTGTGGCGCCCGTACACCGCCAGCCTTGCCGTTCGTAGAAGCTGATGGCGCGGGAATTTCCCTCCAAAACCCAGAGAGTCGCGCGCTCACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1926000-1924568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079201.1 Rothia dentocariosa strain LPB0409 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1925999 29 100.0 32 ............................. TACAGCGGTGTGTACGACAACTCGATACGTGA 1925938 29 100.0 32 ............................. CGGTCAATCTTCTTTGCGTACCGGCGGTAGCG 1925877 29 100.0 32 ............................. TGTGCCCCGCCCTGTGGCAGCAGGAGGTATAA 1925816 29 100.0 32 ............................. AACGACATTACCTGCTCCCATGTCTGCTGCCA 1925755 29 100.0 32 ............................. AACGACATTACCTGCTCCCATGTCTGCTGCCA 1925694 29 100.0 32 ............................. AACAAGCACGTAACAACCTACTGCCAGAACCG 1925633 29 100.0 32 ............................. AAGGAGCCGAAAAATGGCAAAGCAAGCCAAGA 1925572 29 100.0 32 ............................. CACTCCTAGCTTTCGCGGGCAATTCCACAATA 1925511 29 100.0 32 ............................. CGCCCGAACTTTCGTTCGTTCTTGAACGTGTG 1925450 29 100.0 32 ............................. CTGACTCTAGGGAGCTAAGCTGTGAAACACTA 1925389 29 100.0 32 ............................. TTGAGAAGCTATCTCAGTTTCGTAGTCCTCCA 1925328 29 96.6 32 .........A................... ACGCGGTACGCGCCGGGCTATCGAAGGCGAAA 1925267 29 100.0 32 ............................. TTGTGTTTGATGAGCGTGCGAGTGAGCGGAAA 1925206 29 100.0 32 ............................. GTGTAATACTATGCGTATTACTATTGAACTTG 1925145 29 100.0 32 ............................. CCACGTAAACACGGGGCCTACGATGTTCTGCA 1925084 29 100.0 32 ............................. GGTTCGAGACGCGCCTTCACCTTGACCGCCTA 1925023 29 100.0 32 ............................. CTGACTCTAGGGAGCTAAACCGTGAAGCACTA 1924962 29 100.0 32 ............................. CCCTCAGGTGTAGGTGTAACGTTGATGCCGTA 1924901 29 100.0 32 ............................. ACGCGAAGAAGGTTCTAAAGCAGTATATGAAC 1924840 29 100.0 32 ............................. ATGCCGCGTGAGGTTGTTATTGGTACGCAGGT 1924779 29 100.0 32 ............................. ACGATGAGGGATGCGGCGGGTTCTAGGATCGT 1924718 29 100.0 32 ............................. AAACATCAAACCGCCATCGCGGGTTTCGATCT 1924657 29 100.0 32 ............................. ACCGGCGTGTTTCACACGGGCACTTACAATAC 1924596 29 79.3 0 G......................A.TTTT | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 ATTTTCCCCGCACCTGCGGGGATGAGCCG # Left flank : TTTGGGATGAGAAAACTGGTGGCACATCTGCTCGACACAATTTTGAGATGGATGGGGACGCATGATTGTAGTGGTTTTATCTGCATGCCCAGTTGGGTTACGAGGCGATCTTACGAGGTGGTTATTAGAAATTAGTGCTGGCGTTTTCGTAGGAAAAGTGAGTGCGCGCGTGCGTGAACATTTATGGAATCGCATTACGGTTACTTGTAGTGATGGTCGTGCTCTTATGGTGTATTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGAGTCAAACTTATGATGCGTCCATCTACTCCCAAAGAAAAATTGGGACTTCGAAAAGGGTGGAGTAAAGCGAGTCGATATAGGCGTGCTTCCCGGCGACGCTACAGTTAAAAATCATGTAGGGTTAATAGAGGCTTTGGGCTCCAAACTAATTCTAAAACTTGCTTTGTGGGGATAAAGCCCCATATCAGCAAGG # Right flank : TCAACCCTATGAGGAATACTCCCTTAAATCTAGTGACGCATATCATGCTTACTGGAGTTGGTGGGGTATTTCCTTAACTGTATAGTTATATATGTTGTTCGGGCAGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCAGGGAATTCTCTTTATTTTTATAAATGTCGAAGCGGGTCAGGAAAAAGCACTTATATAACCTTTTTGGCAAAACCTAACCCGCTTGCATCATAATGTGAATAACTAGAAACGGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCCTGCGCACTGGCAGAAGTACCCGCCGCAGCAGGGGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCTGAGACAACACCGCTCGGCACCTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCCCCGCACCTGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //