Array 1 79550-77587 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000036.1 Ligilactobacillus agilis strain SN10121 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 79549 30 100.0 38 .............................. TTTCACCGGGATAAGCATTACCGTCAACCAAGAGTTGA 79481 30 100.0 37 .............................. GCTCCACTTAGCCGTTCCTTACCTTGCATTGCGATTG 79414 30 100.0 37 .............................. ACGCGCGTAATGTTTCTGCTGTGTCAGACGTAGTGTT 79347 30 100.0 35 .............................. CCGTTCAGCAATGTTGTCAGCCTAAAAAATCCGTA 79282 30 100.0 37 .............................. ACCCCCGAAGAGTTTGCCTTGGTCATAAACCTAATCT 79215 30 100.0 37 .............................. ACTTCGGCAAGCCCAAGATGACAAAAGATGAAATCAT 79148 30 100.0 36 .............................. GATTATGAACCTAGTAAACACAGTTCTTACAATCGG 79082 30 100.0 36 .............................. GATTATGAACCTAGTAAACACAGTTCTTACAATCGG 79016 30 100.0 37 .............................. AAATGAGTAACACTACCAGCTAATTCGTCCGTCTTAT 78949 30 100.0 39 .............................. TATAGTAGTAAAGCTTGGGCTGATGCAATCGAACAAATA 78880 30 100.0 37 .............................. CCCTTGCCTAGTGAACCGCTAGCGCATTACGGGGCTT 78813 30 100.0 37 .............................. TTTAATTCCCTACCGTCAAAGGTATCAGCTCTAGGGA 78746 30 100.0 39 .............................. ATTTTAGGAGGTGGTTACTATCATAAGTAGAATTACAAC 78677 30 100.0 36 .............................. CGAATAACATACGCAGTTTAGCAACGCACTTTAAAA 78611 30 100.0 35 .............................. CTTTTTGCCTGACTTATACTCTTCAAGCTCAGCTT 78546 30 100.0 35 .............................. AACTTAATAGGGACGATACATTTTACAAACTAAAA 78481 30 100.0 36 .............................. CCACAGGTAGCAAACACAGCTAACGATTGCGGTTTG 78415 30 100.0 42 .............................. TTGTCGATAGCAAAGAACTTTTGTTGTTTAGCTAGTTCATTG 78343 30 100.0 36 .............................. GTATCTGACCGTGTAATAAGTCACGGTTTGAGTTTG 78277 30 100.0 37 .............................. ATAATCTTATATCTAGCCAAAGTGACGTCTGACAACT 78210 30 100.0 40 .............................. CACTACTACATCATCAACGAAGATTACACCTTGAAGAAAC 78140 30 100.0 36 .............................. CAAAGAACTCTTGGCCGGTAAGACCCCACAAAACTT 78074 30 100.0 36 .............................. GAGTTAAAAAGGGCGATAAAAGAGGCGACGCGTCAT 78008 30 100.0 35 .............................. AAAGAAAGTGCCCGATACGTACCCGGTCAAGGATA 77943 30 100.0 36 .............................. ATGGACGAAGAAGAAGTCGAAAAGGCTCAGAAAGCC 77877 30 100.0 36 .............................. CTCATCAAAGACTTCTTTTAAGTCTTCGTAAGTTGA 77811 30 100.0 35 .............................. ACGTTGGACAAGAAGACTCTGACCCAAGAAAGCAA 77746 30 96.7 36 .......................C...... GTTAAAGTCAGCTGTTGCCTTGACGGTATAAACAAC 77680 30 100.0 34 .............................. AAGCCCCTTTTCCTCAGCGGTGAAATCCTTGCTT 77616 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 30 30 99.9 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : ATAACCTAATTTTTTAGCCGCTTGAACATAATCTTCAATTCTCAAACCAGATTGCAACAAACTATAAGAACTAATTACCTGTAAGGGTGAAAACATTCTCTCACCTTCCTTTGCCCTTTACTCATTTAACTACTAAGGTTATTATAACAAATTTCTCGTAAAAATTTTCTTATGCTTTTTCAGGACAAATGTGTTAAACTACTTATATATTGTGAGGTGCTCATGATGGGAAAACAATTAACAATTTTATTTTGGGGATTCATCTACGGTGAAGTTTTAGGCTACATCGTTTCCGCTTTAAGTGGCTACACCTTTGACGCTAAACTTTCCGGCTTAATTCCAATGATTGGCGGTTTTATCGTTATTAACTGCTTATCTTACTTCGTCAAAGATTCCCAAGAAAAATAGAACTTATTTAAGGTGCTAACTTCTGAAATCTAAGTTGGCGCCTTTTTTAGTTAAATTTAAAAAACAACAGATAGGCTTCTGAATAGAGCCCT # Right flank : ACTGCACCTTAAAAGCCTTGTATTATCAACAACTTAATCCATATATTCTGTCTATCACCTTATTTACACCTACAGTCACATATTACCTTCTCCTTCATTTTCTTTCAACCCTTGATATTTCGGGCTTTTAATCATCTGTCGATGTTACCCCTAATTTGCTTTATCTATGGTCGACAGATAAATAATTAGAAAAAGTTTGAAGTTTCATCAGACATATCCATTCCTAAAAACTGTTTATCTAGCCATTTCTTATTACGATTTTTAAAAATAATTACAGAGTCTTTATCATCTACTATAAATCATCACACTCACACTTTTCTCAAATATCTATACTTAATCCTCTATCGCCGTCATAATTATATTTAGAACTTAAAACTGGAATACTTTGATAACGAGACAGTTTAACCTTATCTACTATCTTTTTCTTACCTTCATTTTTGTTTTCTTTCTTTTCAAGTTTATAAAACTTGTCAGCGAGTACTTGGACCGTTAAATCCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 165767-164328 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000036.1 Ligilactobacillus agilis strain SN10121 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165766 29 100.0 32 ............................. AAACTCATTGACATTATCCGGCCTAGCACTAT 165705 29 100.0 32 ............................. AAATCGACTACCGATAAAAAGATTATAGACGA 165644 29 100.0 33 ............................. TACCCCCCCTAAGACTTCTACGTCAATCAGAAC 165582 29 96.6 32 ............................C GAAGAGCGCCTAAGTATCGTTGGAAAGATTAA 165521 29 100.0 32 ............................. GGTCACTTCTGCTTGTTTGTAAGTGACACTAG 165460 29 100.0 32 ............................. ACCCCGCTTTGAATATCTACAAAAAAGTATAG 165399 29 100.0 33 ............................. ATGATGAGGATTTTAAGGGTATTGATTTTGATA 165337 29 100.0 33 ............................. CTTTTTCATTTATAAACCCTCCGCAAATTGTTT 165275 29 100.0 32 ............................. ATGATTTTCGCATATATACGAGTCAGCACTGA 165214 29 100.0 32 ............................. ACACTCCCAGGCAACGAACCTTTTTTAAACAG 165153 29 100.0 33 ............................. ATATAGCGACTAATGACGTGGATGTATCTGAAA 165091 29 100.0 33 ............................. ATCCACACGTGCGACATCTTTAGCGCCGATTAA 165029 29 100.0 32 ............................. ATACGATTGTTTTCATCCCGTTGGCAAGTTTC 164968 29 100.0 32 ............................. ACGTTATTTGGGAAAAGGGGACGATGATAGAT 164907 29 100.0 33 ............................. GCAAGTGGCCCGGCTAACGCGGCATCAAGCGCG 164845 29 100.0 32 ............................. AACAAAACAGAAATAATCTCATATGCCACTAA 164784 29 100.0 33 ............................. GAAAGCAAAACAATTACAATCAAAATTTCTAAA 164722 29 100.0 32 ............................. GAAGCTTTTCATCATTCCGCAACTTAAAGTTC 164661 29 100.0 32 ............................. TAGACATCGCCGTTTTTGTATACACAAAACGA 164600 29 100.0 32 ............................. CGACATATGAAACTTGTAACTGTAAAGAAAAA 164539 29 100.0 32 ............................. GTTGAACCAAACACTTAGCATTGGGTCGCCCT 164478 29 96.6 32 ............................C GAAGAGCGCCTAAGTATCGTTGGAAAGATTAA 164417 29 96.6 32 ............................C ATATGTGCAAGTGTTTGTAAACACTTTTTACT 164356 29 82.8 0 ..............G.......C...ATG | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 CTTCTCCCCACACTAGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCCCGTAAAAAAAGATAATGAATTTTTAGATAATTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCTCATAATTCTCTGTCCGATTCTATAGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : AATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCATTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTACTGTGATGGGTTAGATGTAATTGAGGAATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3563-3810 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000045.1 Ligilactobacillus agilis strain SN10121 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 3563 32 100.0 37 ................................ AGTTTCAGTTAAGTTGGACCCTAATCAAGACAAGTTT 3632 32 100.0 43 ................................ GCTGATGATGTTCAAGTCGTAGTTGCTCCCGTCCGACTTGTTT 3707 32 96.9 40 .............A.................. ACCCGAACAAATAAATGAATACCGCATCATGCAGGCGTTT 3779 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ =========================================== ================== 4 32 98.4 40 TCGACTCCTATTAGCGGAGATACATCACTATC # Left flank : AACTAATCTATATGAGTTCATCAAACCCGGTGTCCGTATTGACTTTAAACTTGATTTTTACAGTCTCCGTGGTCAAAGTCTAACCGAAATCTTACCAAGCTTAAAAGTAAGTCAGCAGAAATACTTTGACTACTACCTCAAACCCTTTAAAGATGTTGATTATATTGGTAAAAAAGCCTTGCTTAATGACGAAACATTCTTTTTAGGTAGTAACACCGGCTTTGGAACTAAGACCTTATATCGTTTATTAGTACCGGATGCTGAAACTAACCTAGAACTCGTTAAAAATGTCCTTCATTCTAATTTCAAAAATCATGGTCACTTAAACGATCACGAAGTTTCTCCTCGCATCATCCACTTGACCAAGTGGGAAAATCAACGCTACCTGACCGGCCTTTGCACCATCGACAAGGTAGAAAAACTCCAATAATTAAAGATTCCTATAACAAACAAAGCAGCTAGGCTACATTCATCGTAGCTTGGCTGCTTTTTGCATACAA # Right flank : CCCATACCACTCAAATCGTTGTTAAATCAAGCTCAAGAGCTGTTTTTCCCCGCCCAAAAAGCGGGCACCCCATCCCTTTTTCAGCCTAGTTCGCCCGGAATTTGGACGAGCACTCCCGCTTGACACTTCCATTATAACATATGCTCTCAACCGTTAGGCCATTTGTTCTAGCTTGTGCAGATTCTCCTTAAAACTTTGGTAGGCTACTTCATCATTGTTCGTGTCTGACTTAGGATAAAAATAAATTTCGCTTATCTGCTCTTCTTGATAAACGTTTAAGAAGTAACTACCCTCAAATCGCAACGCATTACGCAGTAAGATATCCTTTAATACATAATACAGGTAATGTCTAGCTTGACCGCCCACTTCCCTAGTCATTAAGCTTTGATAATATTCTGCTTGATATTCTTCTAAGGAATCTAGCTCATCTAAATCAAGTAGCTTCAATAAGCAATTAAGGTTCGTTTCATTAGTGAGCTTACTTAAGGAGATTGCCTTAA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGACTCCTATTAGCGGAGATACATCACTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 7742-9363 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000045.1 Ligilactobacillus agilis strain SN10121 sequence45, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 7742 29 86.7 39 .......-A.A.G................. GGAGCTAAGAAGATGATTGAAGCCGGCAAGCTCAATCAG C,GG,T [7745,7747,7750] 7814 30 100.0 35 .............................. CATATTCAGGGTTAGACTGCTCAAGTTTTATTGCT 7879 30 100.0 37 .............................. AAGTCACAGATGTAACTTCACCCTGATCATCATAATT 7946 30 100.0 38 .............................. GTTTGCAGGGCTAAAAGAACAACCGAGACAGCCTCCCA 8014 30 100.0 36 .............................. ATCACTCTTTTTGATGACTGCAAAAGCCCCAACTAA 8080 30 100.0 34 .............................. CTGATTAGCCCCTACTTCTGTCATACTGTAATGG 8144 30 100.0 35 .............................. GGACATCCCTACACCTAGGGATTGGAAAGAAGTAG 8209 30 100.0 36 .............................. ATGTTTGGAAAGAGGACCTAAAAGACCGTATAATTG 8275 30 100.0 39 .............................. TGACTGGAGCTAAAACCGCCTTAGACGGCATTAAAACCG 8344 30 100.0 42 .............................. TAGTGTGGATATCAAATCGCCCTCTCTCTCCAGTCTTCCAAC 8416 30 100.0 34 .............................. ATAAAGCAAATTCGTTTGCTTCGGCTTCAATCTG 8480 30 100.0 36 .............................. TAAAATTACAACGGTTGATGTGCATTTAGATGAGGG 8546 30 100.0 37 .............................. AGCTTAAAGACCTTGAAAATCAGAAGAAAATTCTAGA 8613 30 100.0 36 .............................. TTTAAATGCAGCAATTAAGCAGAACTTAGAGTTATA 8679 30 100.0 36 .............................. ACCCAAAATGCGCCTCATTTTATTTTAATGTTTTTT 8745 30 100.0 35 .............................. TTAGACGAATGTTTATTGAAATTAGATAGAGATCG 8810 30 100.0 35 .............................. ATGCATATTTTTTCATTGTCGTTGTTAAATCAGCA 8875 30 100.0 35 .............................. CAAGCACATGTTAGGGTTAGCCTTAACCCACATCT 8940 30 100.0 35 .............................. AGCCTCCATCCTTTGAATGAAGTCAACAAAATCAT 9005 30 100.0 35 .............................. TCAACGGTCTTATACTAATCGCAAAGGTGAAAAGG 9070 30 100.0 37 .............................. GCGTATCAAACTCTAGATGGTTCTTAGACCGTTGACG 9137 30 100.0 36 .............................. ACACTATCGTTTAGATCCTAAAATTGACCCAGAGAC 9203 30 100.0 35 .............................. CGTTTACCGGCGCACCTTCGATTAGGTATCTTTCA 9268 30 100.0 36 .............................. CGGAATTGAGCAAGAGCAATTAGACGAAAGTTTGAA 9334 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 25 30 99.5 36 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : CCTTTATGTCCTCGAACTTTGTAACGATTAACTAAGTAAAATAAAAATCCCATGAAATCGACTACGGCCTCATAAAACTCAGTAATCTCCCCAAAGCTCTAATTATAAATGGCTTCACATAACAACCCGTGAACTAAAGTTCAAAAACTAATTTCCAATATACTCCACTTTCAACCCATTCTTATACTCATCAACATACAAGGTCCTTTTCTCAACACGATCTTTATGAACGATTTCCAAAGTCTCCACAGAATATGTCATCTCTGTTTCTGACCATTTGTATCTTCTGCCAGCTTTATCAACTATCCGCATTTCAATCTCTTTATTTGCTTGCTTTCGTCTATTTTTCAAACCTTGCTGAGAAAGGTTTAGCGAAATAATGAGTTCATTTGCAATGGCTCGAATAGCTTGGTAGGCCGGATTATTTGCTGGCGCTTCTTCATTTGAATCACTCCAACCTAAGGAATTCATCTTGGTCAACATTGCATATGATTCTTTTA # Right flank : CACTACGCCCTCAAAACCTCATACTACCAACTATATTTCACACACATTCTGTCTATCACCAAATTCCACCCTCAATTATATACTACTTTTTTCCCTAAATTCTTTCAAGTCCCTTAATATCAACCTTTTTGTCATCTGTCGATACCAGCACTATTTTACCCTATCTTAGGTCGACAGATATAAATACTCCATTACGTAACGTTACTAATAGAACCATTTTCTAACTAGCTTTTTTCTTGTATGCTAATAAAAACCCCCTCCTACCAAGTAGACTAGAATAATTAACGTAGGAGAGGTTCATTACTAATGATACCATAAAATTCAATAATACAGTTCCCAATATTAAAAATCTTCCGGCCTAAAATAAACGCTAGTTCGATTAAAACATAATAAAAAAGTCCCTTGGTGCCATCTAGCTACCAAGGGGCTTCCTCTAACTACACTAACACTTGATTGGTAAAATGGGTCTCCACAAAATCAATAATCAGTGTTTATACTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 27394-28893 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000062.1 Ligilactobacillus agilis strain SN10121 sequence62, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 27394 30 100.0 37 .............................. AAGTAGTTCCGTCAACGTTTACATAACCGTAATCAAC 27461 30 100.0 38 .............................. GGGCGCGCCAAGCCCCTTTTAGCCCCGCAATGCTCTAG 27529 30 100.0 36 .............................. CGCCAGTGGGGTTGAAGAGCGGTACACGCAACTTAA 27595 30 100.0 36 .............................. AGTGGTAGACGTTGATTACAAGATTAAGACTTATCG 27661 30 100.0 36 .............................. CTGGACGCGTGTTTCAAGCCGGGCCGCCACCTGGTT 27727 30 100.0 39 .............................. TTGCAAATGGAAAAGGTCCAGGAAAAACCTAGTTTGTCC 27796 30 100.0 35 .............................. AGGTAGCATTTTGATAAAACCACTAGCAAATTCAA 27861 30 100.0 37 .............................. ATTTAATTATTTGCGCTGGCACGACCATGTAGCACTT 27928 30 100.0 36 .............................. CGCAATCGCAAACTAAAGCTTATTTACGTTTTAATA 27994 30 100.0 40 .............................. GGAGTATCTACAGACTATCTTTTAGGTAGAACAGATGATA 28064 30 100.0 35 .............................. GGGATATTGGTTACTCTAAACCAGGGCGCATTATC 28129 30 100.0 38 .............................. ATTATGAGGCTAGATTGATTTCTAGCCTCTTTTTTTTG 28197 30 100.0 35 .............................. CCAAACAAACTGTAAGCAACTCGCTATTCCTAGTG 28262 30 100.0 37 .............................. TTGGAACACGTCTTCAATCAGATACAAGGTGTCTTTC 28329 30 100.0 39 .............................. CGCGCAACGTCTAAAAGAATTTAAAGAACTCAAAAAACA 28398 30 100.0 35 .............................. AGATCAATGTTACTTGCGTTATAGACCTTGATAGA 28463 30 100.0 36 .............................. GGTAAAGCTAAACCCTTCAAGACTCACGTTGAAGTT 28529 30 100.0 36 .............................. GTTCTTAGTACGCTCTTGGTCTTTCATGTTTTTAAG 28595 30 100.0 37 .............................. AATCTTGCGACGACCGTTCTTGACCTCCCACACAAAT 28662 30 100.0 37 .............................. TTTAGTTGATCCGTTATATCCTAAGTGTGTCACACCA 28729 30 100.0 38 .............................. GTAAAAACCAACATTGACTATGAGTATAGCGAGTTGAT 28797 30 100.0 37 .............................. GAAAAGAACTCTTGGCCGGTAAGACTCCGCAAAACTT 28864 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : CTCTTACGATATTGAGAAAAATTAGTAAAGATTGTTTTCAAAAACTCATCAGCCGCGTGCGAAGATAATCCTAGTTTTTTAACATTCCAGCGGTTCAATTCATACTTTTCGTTGATAAACATTGCCTTAATTTTATTATTAAGGTAGTTTATTCCTTGCCCAAAAGGTAATGGTCTGCCAATATGTTTACGGCCATAAGTCTTATACAAGTATTTCAATGCAAATTGGTATAACTCATTTTGTGTTTTGATTGCCTTTTCATACAATTCTATTTGTTGATAGCTTAAAGAAATATGATATTGTCTTGTGTATCCGAATTTATTACGCTTCTTTGTAACCATTTATGTAACCTCCTTTCAAGAAATATTGAATCGCAATATACAGAAGCTATGAAAAGGCAACTTAAAGGCTGTTATGGTAAAAATAAGTTAGTTTAGCGGGCTTTACCCCTGATTAAAATCAGAGGTTTGCGCCCGTTTTATAATCAACTGTTGTTGGAA # Right flank : CACTACCCTTTAAAATCTCTGTACTATCAACTAGTTTCCACATGCATTCTGTCTATCACTACTTTTGTCCCCATATCTACATAATACTTTTTTCTATAAACTCTTTCAAGCCCAGTGATTTCAACTTTTTCATCATCTGTCGATGTCTCCTTCATTTTGCTCTATCTACGGTCGACAGATGTATACTTGAAGTTTTTTTAACATTACAAGTTATACCTATCTCACTTGCATATTTTTAAAAACAAAAAGAGAGTATAAAAAAATACCGTATATAGATATACGGCATTGACCAGGGGAGTTATTATATTCTCTTAGCATACCCGGCATACCTTTTCCTAAAAAAGCATTACATTACAAAACATTTATAAAACATAAAGCTTGATATATCAACGATTATAACACCCTAAAACACTATGAAACTTTACCTAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTGTTACCGGTTCGCCGGATTTCGAGTCCGGTGCATTACCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 33232-32537 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000062.1 Ligilactobacillus agilis strain SN10121 sequence62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33231 30 100.0 37 .............................. AAAAAAGCAGAGAAGCAGTAGAAGCTGAATGGAACTC 33164 30 100.0 36 .............................. AGCGATGGTGTAACTGGTTATGGCGCGATGAGGCTT 33098 30 100.0 37 .............................. TCAAATAACCTAATTCATTAAGGTAATTGGCATAGAC 33031 30 100.0 35 .............................. CGTGTCTAAAAGGAAATTTTTGTCTACACCATCAC 32966 30 100.0 38 .............................. ATAGTAATTCCCAAAGTTAAAAGTGTAATATATTTAAT 32898 30 100.0 36 .............................. ATATGGGAATGCAACGAAGAAAGCGAAGACGATTGC 32832 30 100.0 38 .............................. CCTTATCTAAACCGTCAAGATGATAGAGCGCCCGATTT 32764 30 100.0 36 .............................. GAACATCCTCGAGCCACAGCAAACATCTAATATCTT 32698 30 100.0 36 .............................. AAAACTTCATCAAACATCTTTTTCTTACTAAATCCT 32632 30 90.0 36 G...C...................A..... CAATTCAACTTTCCTTGTGTACTTTCGCTTCTGCGG 32566 30 93.3 0 G...C......................... | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.5 37 AAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : CATATTGGTGAAATTAGACATGCTGAAACTAAGGCGTCTGAGTAGCTTGATTTTACGGTCGATTCCTTCAATAGGGCCATTTGAGTATTTAGCAAATTTAGGATTAGCGGCATTCAAAACATAGGCTAGTTTTTTATCCGTTGTTAAAGTAGGGTATTTAAGGTTTGAATTAAGTGATTATTATCGATGTTTTTAACGTTTTTAGGGTAAGCCTCATCACGTTTCTTGGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTACTAGTGATATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAACAGTACTAGTATCGACAGATAACAAAAAGGTTGATATTAAGGAACTTGAAAGAATTTATGGAAAAAAGTAATATGTAATTAAGAGTGAAATTTAGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACGGGGGGTTGGGAGTGCAGT # Right flank : TGTTTAAAATATCAGCAGTGACATTTAAGCCTTGTTCTTTTAGAACTTCGCTTGCCTCACTTAAAGCTTTAGTTCTAACTAATTCAGCATGTAAACTTGCAAGTTCTTTATCCTTAGCATCTTGCTCTTGCTTAGTTTTATCTTCTTCAGATAACTTTTTCACGGTCTTTTTACCCGACTTATATGCTTCAAGCACGACTTGGTATTTGCTAATTCTTCTTCCAAGTCGTGCTTATCACCAGTCAATTTTTCTAAACGTTTTTGAAGTTTTTCGACTGTTTTAGCAGCTTTATCTTCCTCGACCCTGCCGGCATTGTCTTGTTCGTTTTCCACTTCTTCATTAGTCTTTTCAACTTCTACATCTTGATTTTTGTTATCCATTACGAAAACACCTTTCTTCTCGCAGTTAAAGCCTTGAGAGGCTACTCAGTTGTTCCTTAACGCTTGCAAGCAGGAAAAAAGGCATAAAAAAGACGGTTATTGCTACTCGTCTATAATTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 34365-35525 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAO01000062.1 Ligilactobacillus agilis strain SN10121 sequence62, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 34365 30 96.7 35 ....C......................... TTGAACGGTTTGAGCAATCCTAATTGGATTTATCC 34430 30 100.0 37 .............................. GCTGAGTGAAGCGGCTGTTCTTCAACAAATCCATTAC 34497 30 100.0 39 .............................. CGGTTGGCACGGCCCAAGCGCAAGCATAACGTTTCCGAC 34566 30 100.0 39 .............................. CAGATACCGCACAGCGCCTTTGATATTCTGAATTTTCTG 34635 30 100.0 37 .............................. AAATTTGGATGGCGACTAACCACTTGCCGATTATCCG 34702 30 100.0 36 .............................. AACTTAACAGGTGTGGTTATTGATAATGACGATAAG 34768 30 100.0 37 .............................. CAGAAAGACAGACTTTTAATGGCCGTCAAGATGGCTA 34835 30 100.0 36 .............................. TATCAAGAAAGTTGCTGAGATCACATTTAAGGCGAT 34901 30 100.0 35 .............................. GCAATTACTGGTTTTACTATCCAGAAGTCATTGAG 34966 30 100.0 35 .............................. ATTGCAAATTTTTTTGCGGTCATGTTGCTACATTT 35031 30 100.0 35 .............................. ATTTCCATAGAGTAGCCTAAAACCCTTGGTACTGT 35096 30 100.0 36 .............................. CGTGCGACAGGTTAATTAACAATGCTTAGAAAAGAG 35162 30 100.0 36 .............................. GCAAGTACCAAATGTAGGTGAATTAAGATTTACTGA 35228 30 100.0 35 .............................. GAGAATGACGTCCAAAGTTTAGCTGACATTCCATA 35293 30 100.0 41 .............................. GATATCGTCAAGCTCAAGCATTAGCAACTGTATACCTGCGT 35364 30 100.0 36 .............................. ATTTCTACGAGGAAATATCATTAAAGCTAGACAGAG 35430 30 100.0 36 .............................. CGGATATAAAGAATCGTAGCGAACTAGAAAAGAGAT 35496 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ========================================= ================== 18 30 99.6 37 ATTTACATTCCTCTTAAGTTAAATAGATTC # Left flank : ATCCATTTAAATATACCACCAATGAAGGTAATAAAGCCAATAATAAAGAAAGCCGGAATGATTATGTCATCAATTGAAGTAACACCTAAAATCGAGAGCGACAATGCAATAACGCCACCAACTAAAACGGCTACTAACCACCCTAATAGCTGTTTTCCATCGCCTTTTTTCCATTTATACAGTTTCATCTCCTCCACCTCCATTAGCGCTATGCGTCTATATCTAACATTATTAGATTATTTTCAACTCATTCTTCTTTCGCGAAAATTTCAGCATAAACCAATACTTTTAAGCTACTCTTTCTAGACGTTACATCTTCCTAAAATTCTCTCTAAGTCTTGACTCGGAATCAATTCACCATAACGGTTTAGCTAACAAAATGCTTATTCAAAGTGGCTACCCGCTAGGTGACCAGTTTTACCACGACGTCATCTGCTTCTAAATCTGCATTCGATAGAACATTCATCGCACTCACCATTTCTATCAAACTAGACTTAGCA # Right flank : CACTGCACTCCCAAAATCCTGTACTATCAACTAGTTTTCACATATATTCTGTCTATCGTCTAATCTCACTCTCAACTATATATTACTTTTTTCCCTAAATTCTTTCAAGGCCTATAATATCAACCTTTTTATTGTCTGTCGATACTAGCACTATTTCACCTTATCTTAGGTCGACAGATACTAGCGTTCTATAACAAAATGTCACTAGAAAAAATGTACTTCACCACAACAATTTTGCAGCTAAATTTTCTTATGAGAAAAAGTCCAGTGAACCAAGAAGCATGATGATACTTACTCTAAAAGCATTAAGAATACCAATAATAATCACTTGATTCAAACATCAAATAACTTAACAATAGATAAAAAACTAAGCTACGTTTTGAATATCGCTAATCTCCTACTCCTAAGTCTGCTAAATACTCAAATATCCCCATTGAAGAAATCAACCATAAAATCAAGCTACTCAGACGCCTTAGTTTCGGCATGCCCAACCTCACTAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //