Array 1 550-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFF010000004.1 Pectobacterium brasiliense strain IPO:4064 NAK:242 tig00000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 549 28 100.0 32 ............................ CAGCTCTGCGTCAATATCTGTCAGCACGTGGT 489 28 100.0 32 ............................ GCACTTCCTGCGCGAAATCTGCCTGAATCGTT 429 28 100.0 32 ............................ GACAAGGAGCAAATAACGTCGCCTGCCTGTGA 369 28 100.0 32 ............................ ACACCTGAGCGATCGTTAAATCTTTTATTCTT 309 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTTTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTAAATAAATACAGAAATTCAGCCAGCGGCTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 633656-633923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFF010000021.1 Pectobacterium brasiliense strain IPO:4064 NAK:242 tig00000305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 633656 28 100.0 32 ............................ CAGCTCTGCGTCAATATCTGTCAGCACGTGGT 633716 28 100.0 32 ............................ GCACTTCCTGCGCGAAATCTGCCTGAATCGTT 633776 28 100.0 32 ............................ GACAAGGAGCAAATAACGTCGCCTGCCTGTGA 633836 28 100.0 32 ............................ ACACCTGAGCGATCGTTAAATCTTTTATTCTT 633896 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTTTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTAAATAAATACAGAAATTCAGCCAGCGGCTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 641941-640291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFF010000021.1 Pectobacterium brasiliense strain IPO:4064 NAK:242 tig00000305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 641940 28 100.0 32 ............................ ATTGGACACGGCATCATCGAACGTCACGGTAT 641880 28 100.0 32 ............................ GACGTCATCTTCTGCGCCGTCATACTCGGCAT 641820 28 100.0 32 ............................ ACCAATCGCCATTCCAACCACTTCACCAAACA 641760 28 100.0 32 ............................ GCACTGAAGCTGGGAAAGTGTTTGGTGAAGTG 641700 28 100.0 32 ............................ GTGAATCACAGGTTATGCCTGCACAGCCCAAA 641640 28 100.0 33 ............................ CTGCTGCAATAGCGGCTTGTACGTTTCCGGGCA 641579 28 100.0 32 ............................ GTGAATCACAGGTTATGCCTGCACAGCCCAAA 641519 28 100.0 33 ............................ CTGCTGCAATAGCGGCTTGTACGTTTCCGGGCA 641458 28 100.0 32 ............................ GCTGTGAAATTGCAGGTGATGGCCGCGTGTTA 641398 28 100.0 32 ............................ CAGCGGATCAACGAGGGCGCGGCAGGTTGCAT 641338 28 100.0 32 ............................ GTTATCTGGCCTACAATTAACTCAGATGGGTC 641278 28 100.0 32 ............................ AAATAATGAGAGCCACGGAAATATTTGGCCCA 641218 28 96.4 32 ...............A............ GTATAAGCATCTGGATATACTCGTCCATATCG 641158 28 100.0 32 ............................ AGGACTGCAAACCAGCTCCCGCAACAAGCAGG 641098 28 100.0 32 ............................ TATCGCACGCCCGGAAATTCTCGATGCGGTAT 641038 28 100.0 32 ............................ CAATGCTTAAGCTCTTGGTTTTCACGTTTTAA 640978 28 100.0 32 ............................ GCAGCGTGATCGGCTCACTGCCCGCCAACACT 640918 28 100.0 32 ............................ AATCCCTTCGGCAACTTTCAAAATAACTGTCA 640858 28 100.0 32 ............................ CGCGTATCGAACAACGACCACTGACACACGTT 640798 28 100.0 32 ............................ GATGCCCGCCGCTACCAGAGCGAATTAACGCG 640738 28 100.0 32 ............................ CAGGCGAATAACAGGACGCTCGCTCGGCATAG 640678 28 100.0 32 ............................ TCACTGAATCCCAGCAGCGGCCTTGCCTCGTA 640618 28 100.0 32 ............................ GGAACAGCAGCAATCCGTCGTCCACCGCCGCT 640558 28 96.4 32 ...........T................ TGTTCGGAGATCGAGAAATAATTCCGCGAGAT 640498 28 96.4 32 ...........T................ AACGTCGCCAACATAATGCAGTATTGGGAGTT 640438 28 100.0 32 ............................ TATGACGCTGCTGGACTCAATGCCGCCAAAAT 640378 28 96.4 32 ...........T................ ATGATGAATGCAGCAAATTTGCCATCAGCCGG 640318 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGTGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCATTAGAGTGATCGGGCTACA # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTTTGGGGAATGGAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTGAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //