Array 1 454321-455813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPW01000002.1 Salmonella enterica strain 16E229 NODE_2_length_635005_cov_20.9134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454321 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454382 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454443 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454504 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454565 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454626 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454687 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454748 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454809 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454870 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454931 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454992 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455053 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455114 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455175 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455236 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455298 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455359 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455420 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455481 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455542 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455603 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455664 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455725 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455786 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471945-473909 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPW01000002.1 Salmonella enterica strain 16E229 NODE_2_length_635005_cov_20.9134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471945 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472006 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472067 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472128 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472189 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472250 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472311 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472373 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472434 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472495 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472556 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472617 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472678 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472739 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472800 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472861 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472922 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472983 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473044 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473105 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473166 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473228 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473331 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473392 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473453 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473514 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473575 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473636 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473697 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473758 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473819 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473880 29 96.6 0 A............................ | A [473906] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //