Array 1 100133-98700 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYD01000004.1 Salmonella enterica subsp. houtenae serovar 44:z4,z23:- strain 04-0023 NODE_4_length_289444_cov_4.04219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100132 29 100.0 32 ............................. CTCTGACGGTAGCGGTTTGGTGTAGTCATTTG 100071 29 100.0 32 ............................. GGTAGCGCATCAACATCATCAACCAGCCATAC 100010 29 96.6 32 ............................A GCAGGGCTGGGAGGGTCATTGTCTCAAGGTCA 99949 29 100.0 32 ............................. ACTTGGGAATGCGCTGAGGTGGGCAGCAAGCC 99888 29 96.6 32 ............................T ACGGCAAGAAGCGCCGGAGAAGATTACCGATC 99827 29 100.0 32 ............................. CGGCGAGGAGCAGTCACGGAGGCCAAATAATT 99766 29 100.0 32 ............................. CGGCGAGGAGCAGTCACGGAGGCCAAATAATT 99705 29 100.0 32 ............................. CCGAATCTATTCTCTATACAGATCTTAAAACA 99644 29 100.0 32 ............................. GGAAAAATCCGACAAGACCCCCAGAAGTACGC 99583 29 100.0 32 ............................. CCAAAGGGGCCCTCGGTTTCCGCGAGACCTGC 99522 29 100.0 32 ............................. CGCCCGCGATAATAGTGAGTAAAATTTTCTTC 99461 29 100.0 33 ............................. CGGCGCTCACGTTATTTTTGTTCTGCCAATGCC 99399 29 100.0 32 ............................. CTATCCCGTAATCTTCTACGGTAATAACTTCA 99338 29 100.0 32 ............................. GGAATCAAAATGAACGCATCAGTAAATGAAGT 99277 29 100.0 32 ............................. GCCTTTTGCCGTTAGCACTGCGTTAGGGACGC 99216 29 100.0 32 ............................. ATGCCCGGGCGTTAACGCTGCACGACGAATTG 99155 29 100.0 32 ............................. TTTTAAAATATCTGTCAATAATGGCGGCAGCA 99094 29 100.0 32 ............................. GGTACACCTCTGGTAATAATGGAGGTCTTGAT 99033 29 96.6 32 ...........................T. GTTATTGCATGGCGTGTCCTTGATGCTCAATT 98972 29 100.0 32 ............................. CCAAAGATTCTCATGGCCTCTATGGACATGTC 98911 29 100.0 32 ............................. GCATGATGAATCTTAAAAAGATGCACCACGCA 98850 29 100.0 32 ............................. CGCTGGCGCTGTTCTTCGGTAGATTTCTCCGC 98789 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 98728 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //