Array 1 2866-1818 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLZ01000047.1 Brenneria alni strain NCPPB 3934 BA_contig000047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2865 28 100.0 32 ............................ AACGCTCAAATTCATCCCTTACCTGTTCTATG 2805 28 100.0 32 ............................ ATCTCCGTCAATGTGCTCAAGCATGGAACGGG 2745 28 100.0 32 ............................ AATTCGTGCCGAATACTATCGCAACGCATAAT 2685 28 100.0 32 ............................ ATTAAGCCAGCAGCGCCCCAGGTACGCCATAC 2625 28 100.0 32 ............................ TCGCGCTGTAGTCTCTTACGGATTGGCTAATG 2565 28 100.0 32 ............................ TTCACTGTTATTCCGGCTGCGCGGATGGCTTT 2505 28 100.0 32 ............................ AGTGCCTGCCGAATGTAGACGATTCGCGTCTC 2445 28 100.0 32 ............................ CACGGTGTACCGACGACATCAAATTCGCCTGT 2385 28 100.0 32 ............................ ACAAGAGATAGCGGCGTACGCATATTTGTATG 2325 28 100.0 32 ............................ TAGACAGCATCAAATCAAAGGCGCGAATACTC 2265 28 100.0 32 ............................ TCTGCATTGCCCCGTTCTATCGCCGCCTCAAC 2205 28 100.0 32 ............................ GATAAGAGCCCATTTGATAATGCGTCGGGTGA 2145 28 100.0 32 ............................ TAACATTGAAATTACTTACCTTTTTTAGACAG 2085 28 96.4 32 A........................... GTAGTAAATGTAAGGCTGCACGTGGTGGTGAC 2025 28 96.4 32 ......................T..... TTCACAGGCCAGCGCCTGCTTTATGACCCCCT 1965 28 96.4 32 ......................T..... ATGGAAATATAGCAACAAGGCAAGCAACGGAG 1905 28 96.4 32 ......................T..... TTGCTATGACTTCCAGAGCCTGCGCTATCCCT 1845 28 82.1 0 .....................GC.CTC. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : ATGCTCTGTTTGCGTTGCAGGCGAGCAACTGGCTGAAAGGGTTGCGGGATTATACCCAAAGCGGTGAGATACAGCCGGTTCCGGTCGGGGCAAAATTCCGCACTGTGCAGCGAGTTCAGGTAAAAAGTAGCGCACTGCGTTTGCGCCGGCGATCGGTTCAAAAAGGCTGGCTAACTGAACAGCAGGCGCAAGAACAGATACCGCTTACCCGTGAAAAACGCACTAACTTACCTTTTTTACAGTTAAAAAGTCTGTCATCCGGGCAGATGTTCAAGCTGTTTGTCGCGCAAGGGCCAATTCAGGAAACGCCGGTCAAGGGGGAGTTCAGCTCATACGGGTTGAGCGCCACCGCCACGGTGCCGTGGTTCTGACCCTTTTTTTTCGGTCAATCCTAACGTATTGATTTTATACAGGGCTGGCCGAACTCTTAAAAAGAGGGTCTATACGCCATTAACGCTTTTTTTCTTTAAAAATCAGGAATAAACCATCAATTTACAACG # Right flank : GTCGAGTGCACCAAACACTCCGAGCAGCGGGTGCAATAGCCACCTTTCGTTTTTCTCTGTTTCACGAACCGGTAAATTGATCTCGTCGAAACGCTGACTGCCTCCCCAGTTCCATGTCCAGTTGCGCCGACAGTTGCGAATAAATAGCCTGATAGACCACCATCAGTTGGCTGCTGACGCTTTCTGCCAACGTAATGGTAATTTCCTGAAAGACATAAATTGTCGTTTGCCTGCTATGCAATCTTTTTTGTTTTCATCCTATTTCAGGATACTCAACACAACTCACCTTTCATGAACGAACGCTTTGCTTTTCTGCCGTGTTAACCGTATTATTTTCGCGTTGATAATAGAAATATTTTACTCCGTCTATTTATAACTTTTCTCATAAGGATTTGATATGGCTAATTTGATTTACGCCAGTATTAACGGTCAAAAACAAGGTTTGATATCATCCGGTTGTTCAACTCTTGACTCAATTGGCAATCGCTACCAAACAGGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11529-11978 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLZ01000047.1 Brenneria alni strain NCPPB 3934 BA_contig000047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11529 28 100.0 32 ............................ TGTAATGACCCGCTTCCCACTGAACTGTTTCC 11589 28 100.0 32 ............................ AGTGTTCGTTGCCGCAGACCGGTCGCCAGTGT 11649 28 100.0 32 ............................ ATTCGGAACATTTGAAGCCGGAGCAACGCTGA 11709 28 100.0 32 ............................ AGTACCCCTCACCAACTTTCATCCCGAGCGAA 11769 28 100.0 32 ............................ TTCAGATTGAAGGTCGCTACTATGCTTGCATA 11829 28 100.0 33 ............................ GATGAAGAAATCCAGCACGTTTATCGGGCACTC 11890 28 96.4 32 .....A...................... TTGCGCATCAGGTCGGCGTCTGGCGCAAACAC 11950 28 96.4 0 ........................A... | T [11971] ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GCCATTGACTAAAATACGACAATATTGCAGGTAATAAACATTAGAACGCTTTGAGTGCAGGATCGTTTTCAAATCAGACGGGCTGAATGCGTTATCCATATGCAATAGTCCTGAAAAAGTATATTTAATAAATGATGACGTATTTTTTCTCAGTTAAAACTTTTTTACCCAATCAATACGTTGATTACCGTTAAAAATATATAACTGAAAATATCTATACCCTAAATAATTCGAGTTGCAGGGAGGCGGCAACTAAGCGAATTCCCAATAACAAAATCCTTACGGGTAAGAGAGTAGCAAGAAGCGGCAGGAAGGATATCAAAAGTACCATAATAAAACCGCAACCAACAAACAGGTTGAGTTGGCACGACCCTTTTTTCGCACCATCAACTTTACATCAATATTTTCAACGAGTTATTAATCACAGTAAAAAGATGGGTATATGAAGATATTTGGCTATTGTCCTCATAAAAACAATCCATTAGATTGGTTCTGCAACA # Right flank : ACGCAGTGCCTGCTGAAGACGCACGCCGAGCTTTTGTCTAGGCTGGCTTCTCTGGTGATAACGGTGTTCGGCTATGCGTCTGTAGCACCGGTTCCCAATACATCAGCAGGTCTTCGCGCAATGCGGCTAATGATTGTTTCTGCGTACTCAGGTCGGCGGAGAAAAAAGCGGCGTCGAACAGTTCTCCCATTCGTTGCCGACTGGCTTGTGCCTGTTCTTGCATCAACTTAGCCTGATCTGGCGTGATATCTGAGAAGCTGAATACCGGCAGCATATTTCTGGCCCAGCTATCCGGCAAAGGCTGACCGGCGGCGAGTAATGCGCCAGCGTAACATTCGGCCAACTGCTGAGAGCCGCGCATTTCTCCGGCCAACCAAATTTGAGACTCCGTACGCTGTGAAGCGACCTGGGGATAAACCTGAGCTGCGGCTATCGATACTTGTCTGATGGCGTCATCGTCGCCGCTGAAAAACGCGCGTAACAGCGTGGTTTCGCCCACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //