Array 1 93396-93559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQL01000012.1 Deinococcus ruber strain JCM 31311 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =========================================== ================== 93396 27 100.0 43 ........................... TCCAGAAAAATCCTAGAGAAACACACCTTTTCTGCCATCTTCA 93466 27 100.0 40 ........................... TGCACAAGGCAGGAGAAATACACAGTTCCTATGATCTTTA 93533 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =========================================== ================== 3 27 100.0 42 ACATGTGCAGGGGGGAGGGGGGGCACA # Left flank : CCTGCTGACGGGGGGAGGGGGGTGTCGCCTTCACCTCCGCTCTTTGAGCAGCTAGGCGCTCTCGTCCCAGCGTGACGGGGGAGGGGGGGTGTCAGCGACTTCTTCTCAACATTCGCTGATGCTTTTCCGATTCCAGATCACCTCTCTGGCGGCGCAGCACACACGAGTTTGTTTCAGAGCACACACACAAACTGCACGGACGCTCCTCGCTTGACCACCACCCGGTGGCCAACACTTCGGTATGCCAGAAGCGACCAGTATCTCAATCAACGATCTCTGTCGACTCTTTGACCTGTCAGAGATCCAGGCCCGCCGTCTCCGAACGCACTACCTCACGAGACGCACAGCACCTCCACCCGCCCCCAGCCGAACGCTAAGGCCCACGCACAAAAAACGGAGACAGGGGGGGTATGGCGCTTAGTGCGTGCCCCTCCGCCCTGTCCCCCACCTTCCAAGCGCTCATGTTCGGAGACCGAGCGCTCTCCAAACCACAGCGACGC # Right flank : AACCTGTCCTGTGAAGGACGACAGACCACCACCTGGGAAGGCACACTTTTTCGCATGCCACCAAACACCGAAATTTCCAGCAATGACCTCAGTCGTCTCGTCGGCCTCCACCTGACGCAGGCGCGAAGACTTCGCCGGCGCTACCTCGCCGCGATGGATCAGCAGCAGTTCACCGTGACGGATCTGCCGATCCTCAACCGTGCGGTTGGCTTAGCTCAACTTGAACTTCCGAACGGACGCAGCCGATTTGATGACGCCCTGACCCAGGTTCTCCAAGGAGCCGCAGGCAAAGCCTTCCTAAATTCCCAAGACTGGACGCGGTACATTGATCTCAGACAACAATTCGAGCATCAGCAGATCAACCTGGGAGCGCTCTGGAAAATTGTCTATGTGCATCTTCGGATTGAGACCAGAATGACGGATGAGGGGTTTCAAGAACTCGTTCAGAATGCGGTGCAAGCACTCCTGCGTGGGCACGAACTTGAGACGCTGATCGAGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATGTGCAGGGGGGAGGGGGGGCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 63657-58437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQL01000013.1 Deinococcus ruber strain JCM 31311 sequence013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 63656 29 100.0 32 ............................. TCCGGTACGCACTGGAAATCGGGGCAAAGATC 63595 29 100.0 32 ............................. ATGCTTTTCTTGTCGGCGCTGCGGCGCACGTC 63534 29 100.0 32 ............................. ATGCCAAGGTCAGGAAGGGGTACTGATGGCAG 63473 29 100.0 32 ............................. CGAACATCCTCACGGCGATGATGATGCTGGGG 63412 29 100.0 32 ............................. CGGTCAAGAATCTTCTGCCACAACACAGGTGG 63351 29 100.0 32 ............................. CCCTGAGACTCAGAGAACGGAATCGCGGGCCA 63290 29 100.0 32 ............................. CACAGAACCTTGAGCGCACCGGAGCAAAAAAG 63229 29 100.0 32 ............................. CTGCGGGCGGCCCAGGACGGCCTCACCAGTGC 63168 29 100.0 32 ............................. GTGTATGGCGGACGCGGCGGCAACACCGGCCC 63107 29 100.0 32 ............................. GTGATCTGCCGCTCGCCCCGAACGGGCGGCTG 63046 29 100.0 32 ............................. TGACCACCGCTGCATAAGTTGTCATTGATCGA 62985 29 100.0 32 ............................. CCCAGAAAACTGGAAGCGAAGGCGAAGTGGGC 62924 29 100.0 32 ............................. TGGTGGGCACGAGCTTTAGTGTGTTGCCGTTC 62863 29 100.0 32 ............................. TTCCCGGTGCGCCGCATGGAGAAGCGGAACGA 62802 29 100.0 32 ............................. GACACCGCCGCACTCGCGGAGGGCAGCATCTC 62741 29 100.0 32 ............................. TCCAGGATGGCGTGCCCCCGTCCAGGCCGTGC 62680 29 100.0 32 ............................. GTGTCCCAGACGTGCTCGCCGTCGTAGTTGCC 62619 29 100.0 32 ............................. TCGTCAGGACAGGAGGAGGGGGAGTGAATCCT 62558 29 100.0 32 ............................. ACAACCATGTCTTCATCAAACTGCGCAACAGC 62497 29 100.0 32 ............................. AATGACAAGCTTTTCCCCGATGCGGCATTCTT 62436 29 100.0 32 ............................. TCCTATGGGTCGAGAACGTGATTCCACAGGGA 62375 29 100.0 32 ............................. CTATCTAGCGTCGCGGGGCTTCGGCGTGACCG 62314 29 100.0 32 ............................. AGTTAGCAGTTATTGAAGAAGGTAAGAAGCAA 62253 29 100.0 32 ............................. GCTTGTAAGTATCTGAAGTAGCACCGCTTACA 62192 29 100.0 32 ............................. CGAACGGGCCGCAAAAAGGGGCGGTGGATATC 62131 29 100.0 32 ............................. CCGGGCACAGGGCACGGATGCCCTGACAGTCA 62070 29 100.0 32 ............................. GCCCTGGCAGCGTCCGCGACGGGCAAAGACGG 62009 29 100.0 32 ............................. ATGAACAAATTAGGGCGACCCGCATACAAACC 61948 29 100.0 31 ............................. CACCTGATTGCGTTCAAGCCGGGTGGCCTGC 61888 29 100.0 32 ............................. TGTTCGCAGAGCTGAGCGGCGACAAGACGCGC 61827 29 100.0 32 ............................. CGGGGCGAGATGACCCTGTGCGTCGGCAACCA 61766 29 100.0 32 ............................. AAAGTGGCAACTGCCATCGACCTCATCATGCA 61705 29 100.0 32 ............................. TGGTACTTTGTCGGCTTTTCCTTCAATGACAC 61644 29 96.6 31 ............................T TTTGGCACACGTGTTGGAACTGCGCACGGCC 61584 29 100.0 32 ............................. TTCCTGAATACGGGCTTCACCTTGGATACCAC 61523 29 100.0 32 ............................. AGTACCGGCTCAAGGCCACGAGCGGCGCGGCG 61462 29 100.0 32 ............................. GGCTTCAAGACTGAGACTGACCCCTATGGGCG 61401 29 100.0 32 ............................. GCGCTCAACGATGCCCAAAGGGGGGCCGTGAT 61340 29 100.0 32 ............................. CCCTCAGAGTGTCATTCTCCGGATCTTGCCAG 61279 29 100.0 32 ............................. ATTTGCTCCCCCAGCTCGGCAAAAAGACTCTG 61218 29 100.0 32 ............................. CAAGCTTGAATAACAATGGGCAGACCCCGGCT 61157 29 100.0 32 ............................. TGGCAGACGGCGCAGCAGGCGAAAAAACACTC 61096 29 100.0 32 ............................. ACGTCGCCAACATGGAGGATTACGTCAACGCC 61035 29 100.0 32 ............................. TGCGCGAACTGCCCCTTCCGCACGGACGGGCA 60974 29 100.0 32 ............................. AATCAGAAGATTCGCCCCCTAGCGCTGTTCTC 60913 29 100.0 32 ............................. AGCCGACGTAGCGAGACGTTGGGCGTGTCTGG 60852 29 100.0 32 ............................. TGGTGCAGGTGACAGCGCGGGAAATCGGCCTG 60791 29 100.0 32 ............................. GCCGGGAGCCACATTTTCGTTATCAGTGTTCC 60730 29 100.0 32 ............................. GCTTCCCAGTCCTCAGCGTGCAGCACCTCGCC 60669 29 100.0 32 ............................. TGTCTTTGGCGTTCGTGGTGGCGAACAGCGCC 60608 29 100.0 32 ............................. CCTCGCCCCACTGTCCTGCGTTGTAAAGGGCG 60547 29 100.0 32 ............................. GCTTCCCAGTCCTCAGCGTGCAGCACCTCGCC 60486 29 100.0 32 ............................. TGCAGATGGGCGCACGGCTAGGGGTTTTTTGG 60425 29 100.0 32 ............................. AGGGGGAAGGCGATACCCGCCACAAGCCCTAG 60364 29 100.0 32 ............................. CTTCTCGCCTGCCTAATAGGTGGCGCAAGTTT 60303 29 100.0 32 ............................. AAGGTCAAAGAGACATACATGACCGCCCACAT 60242 29 100.0 32 ............................. CCACTGGGAGACATCATGTACCCCGGTGAGAA 60181 29 100.0 32 ............................. TTAGGAATTAATAGCGTATACGGAAAGCTAGC 60120 29 100.0 32 ............................. CCATAGTTAGCGCTAATTGTATTTGCTGCGTT 60059 29 100.0 32 ............................. TCATCCCCAGTCGCGCAAAGCTCGATGACCTC 59998 29 100.0 32 ............................. CGCCGGTCAGCATGGCAAAACGCTATTGCCCT 59937 29 100.0 32 ............................. TCCGGCACGTTCTCCAGGATGATGACATCGGG 59876 29 100.0 32 ............................. TACAAACCACCAATGAGCGCCATCAGCCCGAA 59815 29 100.0 33 ............................. GGTGCTCTCGCTGATGCCGTGGCGGTCGCAGAC 59753 29 100.0 32 ............................. CGTTTAAATAGAGAGATCATAGGTTGGGACTC 59692 29 100.0 31 ............................. ATTCTCACGTCAGCGCTACACGTCGTTCGCG 59632 29 100.0 32 ............................. TCTCGTCAGGAAGGCGGCAGCGGCAACCGTGC 59571 29 100.0 32 ............................. GCCGAGAGGCGAGTATCGGCGGGCAGTACAAC 59510 29 100.0 32 ............................. TCATGAAACGAGCCCTGATGTTCCTTGCCCTG 59449 29 96.6 32 ...........................T. ATGGTTTGCGCGTATCTTTGCTTACTCTGACT 59388 29 96.6 31 ..........T.................. GGGTCGTATGCGTAAGTTCAATGAAATTCAT 59328 29 100.0 32 ............................. CTCCCCGGCTCCCGCTCCTACGTATTCTCCCG 59267 29 100.0 32 ............................. TTTCAGGGCACAATAGGCATGTTTGCAACAGT 59206 29 100.0 32 ............................. GCTTCGAGGACGGCGGCAGCCGCCCGTTCAGA 59145 29 100.0 32 ............................. CAGAGCTGGATGGCGCAGCTCCGGGGCGCTAA 59084 29 96.6 32 ............................A GCCAATGTCCTCGTGGAAGACACAGGGGAAAC 59023 29 100.0 42 ............................. GGGTGGTGCGTAGACAAAGCTGGAAGGCGGCTCAAGGCGTTA 58952 29 100.0 32 ............................. TGCAGGCACATCGAGGGAGTTCTGTTCGGCAA 58891 29 96.6 32 ..........T.................. CACAACCAGGGTTCCTACCTCCGCGCCTACCC 58830 29 100.0 32 ............................. ATGCAAAGCATGTCCATGATTGGAATAGAAAG 58769 29 100.0 31 ............................. TAGGTCAGCATGCTGGCCGGCAGCGCGCTGC 58709 29 100.0 32 ............................. GTGTATGCGTGGTTTGGTGTCTACTGGGTTTC 58648 29 93.1 33 .....TT...................... GACACCGACGTGGGCGGGTTCATGCTCAAGCAC 58586 29 93.1 32 ...................A....A.... GCGCTGTTCCCGATGCGCTACAGCTACCATCT 58525 28 82.8 32 ..............TA.A.......-.T. ACTGTCGCCAGCCCCGCGCAAATCGCCGCTCG A [58502] 58464 28 86.2 0 ............A...........A-..T | ========== ====== ====== ====== ============================= ========================================== ================== 86 29 99.3 32 GTCTTCCCCACAGGCGTGGGGGTGGTCCG # Left flank : TGGTCGCTGACCTTCATGACCTGATGGGTACCCAGCCCGAAGCAGACGTGTATGAGGATGATGCCTCGCGCCCTGGTGAGCTGTGGGACCCTGATGGTGAGATCACGGGAGGCATCAACCATGATGGTGATGATTCTTGAGCGCGTGCCGCCAAGTCTGAAGGGAGATCTCAGCCGCTGGCTGGTTGAAGTGACGACGGGTGTCTACGTGGGTCATGCCAGTGCGCTGGTACGCGATCTACTGTGGGACAAGTGCGTGCGCTACGTCTACCGGGGGCGCTGCTATCAACTCTTCCGGACCAACAATGAGCAGGGCTTCGAGATACGCATGCACGGCGATGTGGGGAAGGCTATTGTGGACTTTGACGGCCTACAGCTTATGGCTTTCAAAGATTCGCGTTGGTTAGCCTTCCAGCAGGCCGAGTTAGAGGCGGGAAGCATGAAAGCGCAAAATGACACTTAAGAGGGGTCAAAGGCAGTTTTTTGTCGTGTTTCTGAAGT # Right flank : GTGTCAGCTGCTGAATCCAACCCCATCAGCCATATGCTGAGAGACGTTGCAGCAGATAGCTAATGGGGACTTGACGTTCCCGCTCAAATCGGTAAAATCAGCTTAATCTCCACAGTTTGTCTCTTGCATGCTGCACACGGGTTTTTTGTGTCTAGCAAGACAGCGCCGATCTAAAGACTCCGCCCCAGCTTTCCTGTTGCAGGTGACCGCTTCGGCCCCTCACCCTCACTCAAACTTGTCAGGCCCCGTGCCTGGGTAACTGCCTCCGACCAGACCGGGGCACGACGGCCTTCCCTCTCGGATGGCCGCGTTTTGCTGCATCCTCCCGCTGGTGCACGCAGGCACGCTGGACAGACAGCGCCGGGCGACCCCACCGGATCCACGGGGAAGGCAGCCAGCACCTGCCGGGCAGACCCCCACGCGGGGTCTTCTATGGCACCGCGCGGCCCACCGGGCAGCAGCGCCCACCCAGGGCAGCGGGAGCACCCGCCCCACCGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACAGGCGTGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 75939-80121 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQL01000013.1 Deinococcus ruber strain JCM 31311 sequence013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 75939 29 100.0 32 ............................. TGGGACATCGACATCGACAAGGGACCGAACTA 76000 29 100.0 32 ............................. CGATTTACAACTCTCTCAGCATGACCGGTTGG 76061 29 100.0 32 ............................. CACTGGGAATCAATAAGTCAGCGAGAAGACAG 76122 29 100.0 32 ............................. GCGGGCTGGGTGTGGCTGAGTTCTACCCAGTC 76183 29 100.0 32 ............................. TGGGCGGGTGTAGGTGTGTGGGTAGAGCGTGG 76244 29 100.0 32 ............................. GGTGGCAGAACTGGAGCGCCCCAGCGTCCTGC 76305 29 100.0 32 ............................. TCCTACGGGATGACGTATTGGGCGTATCTGTG 76366 29 100.0 32 ............................. GCGGCGGCGCTCCAGCCACGTCAGGCGGTGAG 76427 29 100.0 32 ............................. GGCTGGCGTCAACTCCGGTATGCCGTGCTGTC 76488 29 100.0 32 ............................. CTCTAACAACCCACCCCCGCACAATATCTGCC 76549 29 100.0 31 ............................. TGATGATGATTAGTAATGTACGGCGTTTTTC 76609 29 100.0 32 ............................. CCAGTGTTAGGCAAATCTCCTTCTGCGTTTCC 76670 29 100.0 32 ............................. GCGTAGAAGGCTCCAACCTGCCCCTCAAAGTC 76731 29 100.0 32 ............................. GTGCTGTAGACAACTGGGGGAGCCGGGAGCGG 76792 29 100.0 32 ............................. GTGCCGCTGCCGATGCTGCTGCCCGCCTGAAG 76853 29 100.0 32 ............................. TGCAAATGGGCGCACGGCCAGGGGTTTTTAGG 76914 29 100.0 32 ............................. CCCCTTCGCTTGTCATGGCGGGAAAGGGGCTT 76975 29 100.0 32 ............................. AGGGGTAGATGCTGAGTAACTTTAGCTTCGTC 77036 29 100.0 32 ............................. CGCTCGGCGTAGATTTGGGCCTCATTAAAGAG 77097 29 100.0 32 ............................. CGGGTGAAGAGGTGGTCATTTACGCATCTCAT 77158 29 100.0 32 ............................. TGGCCACCAACGCGCCGAAGGGCGTCTGGAAG 77219 29 100.0 32 ............................. CATGTAAGCGCAATGCTCTAACGTTAATGCGG 77280 29 100.0 32 ............................. TACGCGCCCATAGCGGTTGCCACGGCGGGCAG 77341 29 100.0 39 ............................. TACGCGAGTCGCGAGTGCGGTGCTGTTGGTGGCCTGCCC 77409 29 100.0 32 ............................. GGTAGCCCACTTTCAGACCTGAAAGAGCGCCC 77470 29 100.0 32 ............................. GAAGCGAAGAAGCCATGCCGTAAGCAGCGTCA 77531 29 93.1 32 .........G..................A GTCACTTCTACCAGCCATTCAGACTGTGCAGC 77592 29 100.0 32 ............................. CGTGGGCAGCTTCACGCCGAAGCCCGGCATGG 77653 29 100.0 32 ............................. TTCCTCGACGAGTACACCCCGCCTACCCCCAA 77714 29 100.0 32 ............................. TCCAACAAGGCTCGTCTCGCTGCCGCTGGTGG 77775 29 100.0 32 ............................. CGAGAGATGACCAGAACGGCTATAACGTCTCT 77836 29 100.0 32 ............................. GTGAGCGCAAACATGAACACTGGGCGTTTTCA 77897 29 100.0 32 ............................. GGTCGATGCCGCTAACAACGCATCTTTCCCAC 77958 29 100.0 32 ............................. TTCCTGCGTGCTGTCCCCTACAGCACTTGGCG 78019 29 100.0 32 ............................. GAGCTGCACGAGATCAGCAGGCATCAGATACG 78080 29 100.0 32 ............................. AAGAACGCCAGGACGGGAAGCACCGCGAGCAC 78141 29 100.0 32 ............................. AGAAATCAGCCAGCTTGTTATTAAAAATGTAG 78202 29 100.0 32 ............................. TATCGTCAAAAAATCCGGGGCGGTTCGCGCTA 78263 29 100.0 32 ............................. ATCACAGAGGAAGTTTGGCGTGCTGCCAGTGG 78324 29 100.0 32 ............................. CTGTGGCTCGGCACCAGCGCCCTGGCCGACGT 78385 29 96.6 32 ...................T......... TGATTGCGGCGGCATAATGGCTAAGTTCGCAG 78446 29 100.0 32 ............................. CTGCCAGTGTTCCCGCTTCTTCTCCCTGATGT 78507 29 100.0 32 ............................. TTAGACCTGGCTGTAGATGTCCAGCGGCCTGA 78568 29 100.0 32 ............................. GAACGTGGGGAAGCTGCAAAGCGTCCCAGCCG 78629 29 100.0 32 ............................. CATGCAGGCCTTTATTTGAAATCTCATTAGGA 78690 29 100.0 32 ............................. AACCTCACGCTGGACGGCGCGAAGGCGATCTA 78751 29 100.0 32 ............................. TAGAGGGAGAAGAAGACGGGAGTACAACCAGG 78812 29 100.0 32 ............................. AAGTCCTTTAAACCACGCGACCAGTACAATGC 78873 29 100.0 32 ............................. AACTGGAAGCGGAGCGCGGCCCGGTGTTCTGG 78934 29 100.0 32 ............................. TGGCACCCCAGCGTGTTCGGCGCGATCCCCAA 78995 29 100.0 32 ............................. TCAGTTGTGACGCCGTGCCAGCCGAGGGCGAG 79056 29 100.0 32 ............................. GTCTACCGCCCACGGACTACCCCGGCGCAGAC 79117 29 100.0 32 ............................. GGCACTCCACAGAATCTGAAGCAGGGGAATGA 79178 29 100.0 33 ............................. GCGCAGGCGAGGCAGCAGCCGAGTACCTGAAAG 79240 29 100.0 32 ............................. ACTTGAGAGCGGCACGGCCTGTCTGTGAGCGG 79301 29 100.0 32 ............................. TGGCCTGGACGGGCGCTCAGGCCATCTGGAAG 79362 29 100.0 32 ............................. ATGATCACTGCATAGGGAAAAGGCGCGTTCTC 79423 29 100.0 32 ............................. GGGGCGGGCAGCTTCTGCGGCTCCAGGATGAA 79484 29 100.0 32 ............................. GACTATAAAAACCTGCTGTCTGACATCACCGC 79545 29 100.0 32 ............................. AAAGAATTCGGCTTCGTCACAGATTCGCTTCC 79606 29 100.0 32 ............................. GCGTTCAACGAGCAGATCAACAAGACCCTGAC 79667 29 100.0 32 ............................. CGTTGACCGAAGCTGCCGGAATCGGGCTGGGC 79728 29 100.0 32 ............................. GCCGCTGACGCTATGCAGGCCCGCAAAGATGC 79789 29 100.0 32 ............................. CCGGGGACTTCGTGAACCTGCGCTCAGAGGAG 79850 29 100.0 32 ............................. CGTACATCAACGACGAGCTGGGCGATTTCGTC 79911 29 100.0 32 ............................. AACATGACACAGAACAGCGCACAGAACAGCAC 79972 29 100.0 32 ............................. TCTACAAGGTTAGACCCGCCCGCATTAATGAT 80033 29 96.6 32 .........................T... AGTCCACAACCCTATTCACCAGTTTCAACCGC 80094 28 69.0 0 GT.C.......GCT...-.....A.T... | ========== ====== ====== ====== ============================= ======================================= ================== 69 29 99.4 32 CCGTTCCCCACAGGCGTGGGGGTGACCCG # Left flank : CAAAGACAACAGGGAGTGGGCGACTGGCGCCCAACTCCCAGAACTTCATTCTAATTCAGCCACCACCGGCATTAGGTTTGGCTCCGTCGTCCGCGACACGTACTCCTTGGACGACAAACTGTTTCGATACGGCCTGTTGCCCAGGCACGCCTGGTGTCAGCACCAGAGCAAGCACAACGGCAGTCAGGCAAACTACCTTCACGGTAGACTGCATAAGACCTCCTGAACGGGGGGCAGCGCGGTTCGTCTTGGCGGATGGGACCGCGCCTTCGTTTTGGGTATTGTTCCAATCACCTTGAGCAACTGGGAGTGCGTTACATCGGCATCACCTCCTGACACACAGCTTGAATCTCGACCACGTCAGAACGTGTCGCGCTGAATCCACACCTTGAAATCACATGTCACAACGCGCACACTGCCCTCGGTTCGCCGAGGAGCATGACAATTCAGCTCGATACTTGACAGGGGTCAAGCAGGGTTTTTTGTCGTGTTTCTGAAGT # Right flank : GTATGCCGTGCAACTACCGCTGTTCAGTCCTTGCTAGGCAGCGCAGGGCCTCCAGCGCCAGTTCGATGCCGGGATACTTCTCGCGCACGCTGCTGCGTAGGACGTAGCTGCCCCGGTCATTCTTCCAGACCAGATGCCCCTCGTTCTCGAAGTGGAGTGGCCGCTGCGCCCCGGTCTGGTCGGAAGCGGTCACCCAGGCGCGGGGCCTGACGGACTTGGAGGTGGCTGCGGAAAGATCTAGAAGATACGAGAGGTGAGGAGTCTTTTTTACTTGCACTGCCATTCCGAGCACAAAAAAGCCCACGTCTTGCGGGCGAGACAGCCGTTTTCCTGATTCCTATTGATACCTGCATAAATCGGTCACACCTGGCTTCCAGAGCATGAGCCTAGTGGCAAGCTCCCGCTCCAGGCTATGGCCCAGTTACCTGTCCCCAACTTATGCAGGTATCAATAGCATACGTTGTGGAGAGTAATTCAGTTTCTCCGATTTGATCCTCAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //