Array 1 5419-6422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQE01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 114 NODE_7_length_249264_cov_12.0403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5419 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 5480 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 5541 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 5602 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 5663 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 5724 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 5785 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 5846 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 5907 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 5968 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 6029 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 6090 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 6151 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 6212 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 6273 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6334 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6395 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22681-24787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQE01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 114 NODE_7_length_249264_cov_12.0403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22681 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 22742 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 22803 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 22864 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 22926 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 22987 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 23048 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 23109 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 23170 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 23231 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 23292 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 23353 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 23414 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 23475 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 23536 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 23597 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 23659 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 23720 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 23782 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 23843 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 23904 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 23965 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 24026 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 24087 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 24148 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 24209 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 24270 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 24331 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 24392 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 24453 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 24514 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 24575 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 24636 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 24697 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24758 29 89.7 0 A...........TC............... | A [24784] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //