Array 1 148996-149431 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDO01000004.1 Paenibacillus faecis strain DSM 23593 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 148996 31 96.8 36 .........T..................... TTGTTAGTGCTGATAAAGTCCACTGCAAGGTTTCCG 149063 31 96.8 39 .........T..................... CGGCTGTACCTCGAAAATCTGCTCCTGGCATGTTATCCG 149133 31 100.0 36 ............................... TGAGTGGCCCAAGATAACGAGTGTCGATACTTCTAG 149200 31 96.8 36 ...A........................... AAAGATCAAATTGATTCGTTTGTTAAGAACCAAATG 149267 30 96.8 36 ................-.............. CCACTCAATTGAACTGGAGGGAAACGTCATTGATCG 149333 31 100.0 37 ............................... TTAACCGTTACGCCATATTCGCCGCGAATTTGACGAG 149401 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 7 31 98.2 37 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : AAGCAAGAAGTATCGACGCTTAAAAAGATTGTTAGATCCATCGACAAAGCCGCGTTTCTCACCATCCACGATGTGCGGGATGTGTTTGGAGAAGGGTTCCTGGATATTTCGAAGTAGGAGCATGGTTATTCAATATGGGGTCGAGGACGTTGAGCCGGCAAAAGAGTATGGTGGGATATATCGCCAATGGGCGATTCCGGCCAATTCTCAAGTAATCATGCAGGCGTTAAGGCTTTCTAAAAAAGGAGATTTATATTATTTTGGGAATAGGGTGAAATCTAGACCTTCTTAAATATAGGTGTCGACCTTAAAGGAGAACGCACGAATGGGTGCGAATATGAAGCGAACATGCTTTTCCTGGGGGATTCGCACCAAGGGAATTACTTTATTTTACATAAAAGTTAGTTTATTTTATGTGAAAGAGAAGAAGATCTGCTGATTAGAAAGCCTGTTTTTACAGTATTTTCATTTTGTAGCTTATTCTATGTTAAAAATCGGGG # Right flank : TATGTATGCTTTGGCATCTGTCGCCCCTTCAACAAAATCGCACCCCTACTCGGGTGCGACTGAAATGTACAATAACAGCATGAGACTGTCCACATAGGGGCAGAACATGGCCTCCTGATCCGCATGGCGCGGAAAGGAGGCCATTTATTTTTCCGTGCTTGGAATGAAGCTATCAGCCCGGTAACCCTTCCATCTGCAAACGGTTCAGGCGAAGAAGCAGCATTCTCCGGCCGGGGTTTGGTCTTAATGGTGGAATCCACTGCTCCATCAGACAACCTTGTTTTACATAGAATTCCTGCACAATTATATTTTTTCTGTTGGATCAAAATTTCCAGACTCCTGCAATTCTCGGTCAACATCCTATCCTTTTCGTCGGAGCCCGCCTCCCTTTGATAGCCGGGCGGGTGGATAAGAGCCATTTGCGCCGCTATTTTGTCGAATTCGCCCTTTCGGTGTGAAATAGGGGTCCTTTAAGGCCTTATTTTTGGGAAAAGCGGGCC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 189840-190201 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDO01000004.1 Paenibacillus faecis strain DSM 23593 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 189840 31 100.0 36 ............................... CGGATCCGGTCCGAGTCCCGACATACCATAATCCCG 189907 31 100.0 35 ............................... GCTAATTTCAAGCATAACTGGTTCCACATGTCAAG 189973 31 100.0 35 ............................... TACCACGTATTTAATAGATTTGACTAGGGGGTTTG 190039 31 96.8 35 ............................G.. ATCGATTCGATTTTTGAAGGGCCCATACAGTTTTG 190105 31 100.0 35 ............................... CGTCGCTGGACGCGTGGAAAGCGGTGTTTCGATTG 190171 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 99.5 35 TCGCACCCCATGTGGGTGTGTGGATTGAAAT # Left flank : CCGCAGCTACGCTCTTTGATCTCATTAAAGCCCGCTTGCTGGATGAGAGCGCACCTCCAAGAGAATTCAATCATTATGAAATAACCATAGATAAGGGGAATGTGCCTGCCGGTGTTGAATTAATTGAGATGGTGTAGACTTCTACAAGGTTTATCTGTTACTTTCTAAGGGTAGTTATGCGGGAGTGAATTGGGTTTAATAGCCCTTTGCTATTTAGAGGAAAACAATAATTTTATATTTGGAAGAACACAAAGATCTCTATATCGGCTAACTCCAATATTCTTTTATAAAACAGAGGCGAAAATGAAGTGCCAACATGGTGCGAACCCCAAGCTCCCATGAAATCCCCGGGGCTTTCGCACCTCAGATTTTGTTGAAAAAAGGTGTTATTTATAGGGGGGAGAAAAGGTCAGTAATTAGTTCATGCTTTTTTAGCATAAATCGTAGTATGAAAAGATAAGACCTATGCCTTTATTGGATCAATTTTGCTTTTTTCGCCG # Right flank : TCGGCGTCCAACAACCCAGTACTAGTTGGAATTGATTTAGCTGCGTAATTAGTAAGTACCTTGTCGATAATAATGGTAGGAGTCCTCCGTTGATTAAAAATAAACTTACAATTCATGTCAAAAGGTTCTGTGATATACTATCCAAAACAACTACGTAGGGGATCATATGCCGTTTCCGATAGATGAAAAGTTTGTTGTCGCTGTTGCCTCAAGTGCTCTTTTTGACCTCGAGGAATCTGATCATGTTTTCAGGGAGAAAGGAGAGGAGGAGTACCGAAAATATCAGCATGAGCACGAACAAGTTGTATTGGAACCCGGGGTTGCTTTTCCACTGATAAAGCGGCTATTAGCGATTAATAGCCAAGATCCGAGTGAGCAGCCGGTCGAGGTAGTGCTGTTGTCAAGAAATGACCCGGATACTGGACTTCGTGTGTTTAAGTCAATTGAACACTATGGTCTTTCGATTTCTCGGGCTGCTTTTGTGGCGGGGTCCAATCCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.50,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 258938-259762 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDO01000004.1 Paenibacillus faecis strain DSM 23593 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 258938 31 100.0 38 ............................... AATGTCTGATCCGTTGTTGATTAATATATAAAGTTGAG 259007 31 100.0 36 ............................... GGGCCGGGTGCTTTGTCCATATCGAAATCGAAGAAG 259074 31 100.0 34 ............................... CCCCGGGGTATTATTACGAAGATAATGTATACAG 259139 31 100.0 35 ............................... ACTGACAACTCCACCACGACCATCATCCGCAATTG 259205 31 100.0 34 ............................... CATATTGGGCTGTGTGTATATTACCGTAGTTTCG 259270 31 100.0 35 ............................... TTGGTCTTTTTGGCTATTACCTACGCCAACGAATG 259336 31 100.0 36 ............................... ACCACCGCCGATGCTTTGTCTCCGGGAAGAATATTG 259403 31 100.0 35 ............................... AGGAGATATTATTGGGACATCAAATGTTAAAGAAG 259469 31 100.0 35 ............................... TGATAAGACCATAAGAGCTAACCATCCTTGGGTCG 259535 31 100.0 35 ............................... CATAAATCATTCCGGTTTTGCTCTTTATAATACCG 259601 31 100.0 35 ............................... ATCAATGCACCCGAGGCACTCCCCTACTGGCTCCG 259667 31 100.0 34 ............................... ATATTCCAGCGTGTGGATAACAAAGTGCTTTGCG 259732 31 93.5 0 ..........................A...A | ========== ====== ====== ====== =============================== ====================================== ================== 13 31 99.5 35 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : AGTGGGGGATTTCATGGGAATCTCCCAACCTAGTTACTAGTTGCAGGTTAAACGTTGCTGACGACATTCACCATGTAGATATAAAGCCCCACCGTTGGAGTCTATACGCTTAACCATAAATAACGGGAAAACCTCCAGTTAATTTACCGATCTTGACCTTTGGAGCCAATTTAACTGGAAAAGTTCCATCTATTTCGCGACCTAATGGCCGATATACGCAATTTCGGTCAAATTAACGGGAGTTTCTCCAGCTAATTTGCCTCAGCAGCCGCTTAGGCACCAAATTAACGGGAGGAATTCCCGTTAATGATAAAGCGGCATATCCTTTTGGTGCGAATGTGAAGCGAACATGATTTCCTAGGGGGATTCGCACCAAATTATTTTACTTTAGTATCCTTATTTTCATAAAATAAACAGAAAAATTAATCACTTATTTGTTTAAAGTAGTGATTTTGTAATTTTTAAAGCGACATTTTAACAGTATATGTTAAAACACGCTG # Right flank : AATAAATCGTGACCAACCAGCGTAACGATTAACAAGTGCTCCACCAGACAACTTTAACTAACATAGAATTCCTGCAAATCTTCATCCTTTGGAGTTGAAAGTGCGGCAGGCACCTTCATTATTTAGAATTACAGGTGTCAGAGTCGGGAGCTTCTCAACTTTTGCTAATACTGTCATGACGCTTCGGACGCAAAATTAAAATACTTTTAAAGAAGGCAGCCCGGCAGGGCTGTTCTTTTTTATCCAATAGATGTGTGCCCAACTTGGGGACTGACGACACACACTTGAAAAAAAGCAATAAACATAGAATAATGTAGAAATTTGGAAAGGGAATTTAATAGTTCTATAGAATTAGATAGTTATCGTTAGAATAAATATTTTGAACTAATTTCCGTAGGGGAGGCAGGGTTATGGAGTTTATCGCTCATATCCGTGAAAGCGACCGGGGACGACAATCCCTGTGTGCTCATCTGCACGGAGTTCGGAAGCTGGCGGAATCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 268309-269888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDO01000004.1 Paenibacillus faecis strain DSM 23593 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 268309 32 100.0 34 ................................ ATAATTCGCTTATTTTCAAAAGAGGGCCTGATAT 268375 32 100.0 38 ................................ CATGAATACAAAGAGGCAAAATGCTTTGATTGTGATGG 268445 32 100.0 35 ................................ AAGGTCTACTAATTCGAAGTAAGGTCTTACCCCGA 268512 32 100.0 36 ................................ TAGAGTAATGCTGTTTTCCTTCGTTTCAATTGGACC 268580 32 100.0 35 ................................ CCGACCCCGAATTTCCAGCAACGGAAGGGAACGAA 268647 32 100.0 34 ................................ CTACCATTCGACAGGAAGCGGCATCAGCGCAAGC 268713 32 100.0 36 ................................ ACATATCAAGGTATCTCCAATTACGGCGGTACGCGC 268781 32 100.0 36 ................................ AACCGTCAAATGGTGAATAGCTGGCTCGTAGATACC 268849 32 100.0 35 ................................ TTTAACAGCCGGCCTACCAAGTCATCTTCATGCCA 268916 32 100.0 35 ................................ TAATTTGTTGGGGTTTATTGATTGGTGTAGTTAAT 268983 32 100.0 35 ................................ GGCTTGCCATCAGGGCCGATCAAATATGCTGCCAA 269050 32 100.0 36 ................................ GTAACTTCGATTAGAGCGGCCGCCGAGTTGGCCCGG 269118 32 100.0 36 ................................ TTCGCCTCGCGTTGGATCGCTTTAAGGCCGCGGATT 269186 32 100.0 34 ................................ ATTGAGGAAGTTGAGGAAGCAGAAAAGGAGTGAT 269252 32 100.0 36 ................................ GCCGGAGTTGGCTTGGGTAGGTGAGGGAAAGAGCCC 269320 32 100.0 36 ................................ CCTCATCAAATTCAGCATATCTAACCAGGATGTTAA 269388 32 100.0 36 ................................ GGTTGCTGGGTATCATCCCGGACAAGAGGAAAGGTT 269456 32 100.0 35 ................................ ATCGACATGCGCATGCGTAACAGTAACGGAAAACT 269523 32 100.0 35 ................................ TTAAGATCAGCAAACCAAGTCACGAGTTGCAGCGT 269590 32 100.0 36 ................................ GTCCAGAATGTGCATCTCCGCCATCTACATCATCAC 269658 32 100.0 33 ................................ CCGCGTAAGGCCGCCGCCAGATTGTATATTCCA 269723 32 93.8 36 ...........TA................... CCGTCGGGCAATTCGGCATAAAGGGCGGCGTATTTC 269791 32 87.5 35 ..............A..A.T...A........ TGGAGATCGATGACGGTACCGAGATTACCGCAACC 269858 31 75.0 0 ..............C.A.A.....-.A.GCT. | ========== ====== ====== ====== ================================ ====================================== ================== 24 32 98.2 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : GGATGAGTACCCTCCATTTTTATGGAAGTAGGTGGATCGGATGCTGGTACTGATTACTTATGATGTAAGTACCGTTGATGCAGCAGGGCAAAGAAGACTACGTCAGGTTTCTAAAGCATGTCAAAATTACGGACAGCGTGTTCAAAACTCCGTATTCGAGTGTATCGTGGATGCGGCGCAATGGGCGACACTAAAAATCAAGTTGATGGAACTCATTGATCCGGAGCAAGATAGCCTTCGATTCTATCAGTTGGGCAATCAGTATAAGAATAAAGTGGAACATGTGGGAATCAAGGCGGCCCTCGATTTGGAGGGCCCCCTCATTCTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACTAAGGAATATACTTAATTTTCCATAATGTTCAGCTGATTTGACGTATGAAGGGAGAATATTTATCAAATAAAGGATAATAATTAGCAATATTTTCATATCATTACTTATTTTATGCCGAAAATCGGA # Right flank : TCTTATCCAAGCGAAAACTTGACTCCGCTAAAGTCGCACTCCCGATATCTCCTCCCTCTTTAGGAAACGTCAACTCGTTTTCCGAGAGGGGGATTTTTTTGGCAAAAATTATTTCAAGCCGACAATATTAAAATCCTCTAAATTTATTCCGATAAAGACTTATTGCATATTCACACTTAAAAAGGGAGAGGCGGAGACAGCAGGGATTCACAGACAAGAGGACATCGGAACGTAGTGAGAGATGGAACGTCGCTAAAGTTTATTTCATCCAAGAAGGAGCAACCCAGAATTGAAAAAGGACAAATGGTTATCAGCGGTTCTATCTTTCGTATTGTCGGCAAGCTTTGTGCTGACCTCCGCTTATACGGGAACGCAAGTTGCGTATGCAACGGATTCAATTGTGAATGTAGACAGTGTGGAAATAACCGGAGATGTTGAGGAAGTGTACGTGGGCGAATCCGTGCAGATGACCGCCCGAGTGCTGCCGACCAATTCCACAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //