Array 1 103093-102466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWF010000002.1 Listeria booriae strain FSL L7-0520 NODE_2_length_473787_cov_46.553042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 103092 30 100.0 36 .............................. CTAAGTATTACAATTGCAAATAATAAAGGCGGGGTA 103026 30 100.0 36 .............................. CTAATCGGAAACAGGCGGAGTAAAACGCACTGGCTC 102960 30 100.0 37 .............................. AGAGCATCCACGATTAAAGCTAATTCATCGGCACCTA 102893 30 100.0 36 .............................. GTGCCTTTTTTCACGGTTTTAGTAACCGCATAATTG 102827 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 102762 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 102697 30 100.0 38 .............................. TCTACTAATTTTGATTTAACTGTACCAGATTGGATTGT 102629 30 100.0 36 .............................. ATCGTTCCCCATTCACGATTGCTTAACGTCGCAAAG 102563 30 100.0 39 .............................. AAGAATCGCAACTGGCTTACTTAAAAATTCCATAAATGC 102494 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTGGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : TAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACAAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 49304-48156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWF010000010.1 Listeria booriae strain FSL L7-0520 NODE_10_length_114713_cov_40.589344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49303 30 100.0 35 .............................. AAAATACCTGTGATAATACTCGGCAACCCTTTTTC 49238 30 100.0 34 .............................. CCTTTTTGGGCTGTTTTCGCTCCATCTCCTCTTC 49174 30 100.0 39 .............................. GTCTTAGCATTGCCATCCGCAAAGTCGTCCCTGCTTGGC 49105 30 100.0 36 .............................. ATTTATCACGCATCAAACCTGAATCACGGAAAATAG 49039 30 100.0 34 .............................. CAATCCTAATCGCATCCTCAACGCTACGAGCTAC 48975 30 100.0 35 .............................. GAAGATAGCGCGCTTTTTTTGAATCAAGAAATGTC 48910 30 100.0 36 .............................. ATGGAACTTGGAATATATTAAACATCGGCGTAATGG 48844 30 100.0 37 .............................. AAGAGCGGGTTGATAATCTGATGAGCCATTTCGACAT 48777 30 100.0 36 .............................. AACATGGTCGTATACACAGCATTGAATCGCTTCAAC 48711 30 100.0 36 .............................. ACACGAACGTTTAAATCTGTTTTGACAGAAGTATCA 48645 30 100.0 36 .............................. CTATATGCTAGTGGAGTTCCTCCAAGACTGTTATCT 48579 30 100.0 36 .............................. ACATTTTTTTGGTGGCGATGATTAGTTCACCCTTAA 48513 30 100.0 34 .............................. TCCAATAAAAATGCAGGAAGTAATCCGCCCCAGT 48449 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 48382 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 48315 30 96.7 34 .............T................ AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 48251 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 48185 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 98.2 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCAATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 22352-21986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWF010000012.1 Listeria booriae strain FSL L7-0520 NODE_12_length_71818_cov_46.881825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22351 36 100.0 30 .................................... TGAAAGCGAATGAATTTGCTTCTACTGCAT 22285 36 100.0 30 .................................... CCGAGGTCAAGCGGCTATGGGTGCAGGTAA 22219 36 100.0 30 .................................... TGAAATTCGATGCTAAAGGAAATAGATCGT 22153 36 97.2 30 ...........................G........ GTGTCTACAGTAAAAAATACGGCGCAAATG 22087 36 100.0 30 .................................... TTGTTTGTGCTTGGGCTTACCCTTTGTCTT 22021 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGTAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAGCGTATAACCACATCATTTTTGAGAAACGGTTCTAGCGAGTCCTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGTTACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGAACGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAAAAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCCGCCTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGTA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 252563-250835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWF010000004.1 Listeria booriae strain FSL L7-0520 NODE_4_length_313930_cov_43.673248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 252562 30 100.0 36 .............................. TTTATCAGCACATGTTAGTAAATAATTAGAAATATT 252496 30 100.0 35 .............................. CAAAGAGATGTCTATAAAGATATGCTTTTATTTTT 252431 30 100.0 37 .............................. AACGCCGTAACTACGCTTTCCCCGCAATGCAGTTTCG 252364 30 100.0 36 .............................. TTGTCAAATTGGGCTCGTAGAATACTTGTAATGCCC 252298 30 100.0 36 .............................. CAAGACAGAACGTACTCTATGCGAAATTTATGATCA 252232 30 100.0 36 .............................. AGCATGACGCCGATGAGCTACGCCGCTTGCGCGCGC 252166 30 100.0 36 .............................. AGAGTTTCGAAAGACCAAGGGGCACAAGGCCGTTCT 252100 30 100.0 36 .............................. ATACATGAAGCTGTTGAAAAGGGACTAGCAACGATT 252034 30 100.0 36 .............................. ATACCTGTAGGTGTGATGATTGTATTTTCAAATTTA 251968 30 100.0 36 .............................. ACGGCTTAGAAGGAGGGCGAGCTCAAAAGTATTTCA 251902 30 100.0 34 .............................. TCCTCCCCTATTAGTTTTACAGTTGGTTTCTTTT 251838 30 100.0 36 .............................. TTGTTTAATCCATCATCACCGTTCTGTAACGCTTCC 251772 30 100.0 36 .............................. ACATCTTCAAATGTACGTTCGACCAGATGGGGCTTT 251706 30 100.0 36 .............................. TCGTGCATGTCGTTTGCTTGTTTTATCGACCCATCA 251640 30 100.0 36 .............................. AAAATACCAGAAACTGCTTGCAATGCAAAGAAAGCC 251574 30 100.0 34 .............................. TCTACATCACCTCCGCAATTAGTAAAAGCATATC 251510 30 100.0 37 .............................. TAGACATCTTTATCGTTCCAAGATGGTTTACTATAAA 251443 30 100.0 34 .............................. GGATTTTAGCTAGGAAGGAAAAAGAAAAGCTAGA 251379 30 100.0 34 .............................. TCAGCAAGGCGCCGACCTTTAATTTTTCTAATTT 251315 30 100.0 34 .............................. ATTAACAACATGTCGTGGGTCAATACTAGGCTCG 251251 30 100.0 36 .............................. AGCTATGAGCAGAACTTTATCACATTGCTTGAGTTA 251185 30 100.0 36 .............................. GTGGATGATGAACGCTACACTGATGAAAATAGCATG 251119 30 100.0 36 .............................. TATCTATTTTCAGGATGAACATGCAGATCGTAGAAA 251053 30 96.7 36 .................A............ ATTGGCAGTGTGTCGGGTAATACAAGTGTGCCGTCT 250987 30 100.0 36 .............................. ATAGAAGATGCTAGACTATTTTTGATACGCTACTGG 250921 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [250865] 250864 30 73.3 0 .C....CC.A.....C.A.....CC..... | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 98.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTAATCGGGTACCT # Right flank : CAATCCATTTAGCTACGTCTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGCGCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //