Array 1 1179632-1180657 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL870809.1 Clostridium sp. D5 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1179632 32 100.0 33 ................................ CACAGGATAGTGAATATCGCTCAATTTATGATC 1179697 32 100.0 36 ................................ ATTTAATGATGTAACTAATTCGTTGATTGCAGCAAC 1179765 32 100.0 34 ................................ TCCGTTTACCCAGTTATAATAAGTTTTTAACGAT 1179831 32 100.0 34 ................................ CCGCTACTGTTACTTTTGCCTGATTCGTTTCAAG 1179897 32 100.0 34 ................................ CGGTGGTAGTCGGAAGCGAGTATAATAAGGGGAC 1179963 32 100.0 33 ................................ TCGGCTCAGGAATCCGCAGAAGCGTTTGAATAC 1180028 32 100.0 35 ................................ TTGTTCGTGTGCTTCATTTCTGAGGCCATTTCGAC 1180095 32 100.0 33 ................................ TATTTTGGCGGCGGCGTATACACATTATACGGC 1180160 32 100.0 34 ................................ ATCAAAGGAATTTTTGATACCCAATCTACAGTAA 1180226 32 100.0 37 ................................ GTTCCACTGCTTGTTTTTATTCTGTTCTCAAAAACTC 1180295 32 100.0 34 ................................ ATTCAGTGCACCTGCGAGCTGCTCTGCAGGTGTG 1180361 32 100.0 34 ................................ TTATCCTTTCGAGAGAATGTGGCTAAACACTCTC 1180427 32 100.0 34 ................................ TCCTGTTGATACACATTCCGCATGATCAAATCAA 1180493 32 100.0 35 ................................ CAGAGTATGGATAAGGTGGATTATACTCCAGAAGA 1180560 32 100.0 34 ................................ CCGGGTGCAGGTGAACACATATCATAATGTCTAT 1180626 32 84.4 0 ....................A.T.GGC..... | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 99.0 34 GTCACTCCCTACGTGGGAGTGTGGATTGAAAT # Left flank : ACCTTAATGAATTATCGGAAGTTATTGCCGCATTTATGCAGGGCGTTGACAGCATATACAGAACCTGCATCGTCAGGCAGTTGGGGACATAGATATGTGTACTATACAGCACCGTATCATGGTGACTATGTAAAAGTGATAAATAATTGGCTAAGGAATGATATCCGAATTGTAAAAATCGTTTTAGTGTGCTTTGGGTTGGAAAATGAAGGGGAACAAATTGAAAGAAGTGATTCAAACTAAAGACTGAAAAGTAAATAGCAAGATGATATAAGCTGGGTAGAGCAAAATGGAGATTATTTATTTCACAATGTATTGGGTGCGAATGTGAAGTGGACATAAAATTCCGGGGGGATTCGCGCCTGAAAAAAGTGCAAAATGTCAAATAATGGCGAGAAAAAATGTGGATCAGAGTAAAAAGAATTGTAATTTATTAGAAAATAGTTTAAAATTTAGAAGAAAAGTATAATTTTTCTGTGAAAAAATCGTGCAATTTTGCT # Right flank : TGATGTTTTTGCGTGAGTAGAATAAGGCAGGAGAAGAAAGGGTGGATTGAATGAGATATTTAGCTCATATTGAAGCGGAAGCGGGAGAACAGGAGTTAAAGGATCATTTAATAAATGTAGCTAATGTGTCAGCAGAATTTGCGAAAGTCTTTGGTTGTTATGATTGGGGGTATTGTTGTGGTATGTTGCATGATATTGGAAAATATTCCATAGAATTTCAGCAGAGATTGGCAGGAAGCGATATACGTGTTGATCATTCAACTGCCGGGGCAAAATTGTGTTATGAAAGAGGCGGTATGTATGGATTTCTTAGTTATTGTATAGCAGGGCATCATGCAGGACTGCCAGATACGGGGGAGGATTCAGACACAAGCAGGTCGCCTACATTTAAGGGACGGCTAAAGAAAAGCGTAAAAGATTATCAGGCATATAAAAGTGAGATTTGTGTGCCGCCTTTATCGGAGCCTCCGTTTGATCTAAGCAAGGCTAAGGATATAGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTACGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1435034-1435523 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL870809.1 Clostridium sp. D5 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1435034 31 100.0 36 ............................... GTCCTCCCTTCGCTCTCGTGCTTGCGTACTGAGTAC 1435101 31 100.0 34 ............................... TCCTATTCTGGTCTATACGTTTCCGGAAGAGGCA 1435166 31 100.0 37 ............................... CTGTCATCAATATCAGAGTTCTTGGATTTCCTTTGTT 1435234 31 100.0 34 ............................... CTGTAGAGTCTCTAGCATACCGAGTTGAATCGTT 1435299 31 100.0 34 ............................... GATTATTTTGTTTATAAATATGTGGGAAACGTGT 1435364 31 100.0 33 ............................... CATTTTCGCGCCGGCTCCTGCTCCAGACAGTCC 1435428 31 100.0 35 ............................... AGATCTACGGGAGGGAATACAAGAAGCCGAACCTA 1435494 30 90.3 0 ......................T.-....T. | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 98.8 35 GTCGCTCCTTAACGGGAGCGTGGATTGAAAT # Left flank : TTTGACATATCCATTATTAGAGAAAAGTTTAGCACAAGTGTTTTCTTTTGCTTTTCAAATACATATCATTTAGAAAAGTTTTGTGAATCGTCAAATATGCTTCTATCGGAAGACTCCGAGTAAAATCAGTTATCCAAGATTTTAGGTTAACTGCTGCAGATGAAAAAGCCTATAATATGAGGCATTATAATCTGCAAGCAATAATTACTACCAGCTTTATGATCAATAATGACCTCGTAGTTCATTTTCATAAGTAGTTTAGATAGTCAGGGATTTTAATGTTCAGGGCTTACGATATAAAATGAAAAAAGCATAGTAAAAGTTTCAAGTGCGAGTGTTAAGTAAACATAAATTCCTTGGAGGATTCGCACCGAAATAAACGAGGTATTTCATGTGAATTGATGCATATACCATAGGATAAGCTTGCTAAAATAGAATTAAATAGGTATAATTATCTAAATGGAAACAGAAATAAGAAGATAAGATTGTGCAATATTGCT # Right flank : TGAGTTATTCCTGCAAACGTAAGGTCATTGGGGGATATGGAGATTCGAACTGCCAGGGGAGTCTTGGTTATACGGAATAGCCAGTTATAGTCAAAGCGCAGTTACCTCTGACATTTGTCGCAATAATGTATGCATGCAAACTGACTTTGTCTCTATTCTTAGAAGAAAGTTTAGAAACAAATATGGGGAAAATACTAGTTATCCGTAAATAGCAGAAGAAAGGCAAAAGCGTAGTAACTACGCTAACGGGTTTAGTTTATGAAGGAACAGACATCATTTGATATCAGATATTTGCCGCTAAAAATCACTTTAGTTTCATTAAAACGAGCGGAATTACCGCCTTATCTCGGTTCAACATTACGGGGAGTGATTGGACAGGCGTTATATAGTGTGGATAGTAAGGCCTATGATTTTCTATATGCGAATGGTAAATACTCTGATGACAAACAAGATATTGTTAAGCCCTATTTGATTGTTCCGCCTGAGGTTTGTGGGACAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTAACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 1442478-1443487 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL870809.1 Clostridium sp. D5 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1442478 31 100.0 33 ............................... AAACGAAAATGAATTTTAAAATTAGGAGGAGTG 1442542 31 100.0 34 ............................... TGACTGCAATGATTTTTGCCGTTATGGAATTTGC 1442607 31 100.0 34 ............................... ATTATGCTAAATCGCAATTCCGTTACTATCATAA 1442672 31 100.0 37 ............................... CTATTTCTCCTGTAATCTTATTGTGAATACGTACGCC 1442740 31 100.0 36 ............................... TTCCAAAGTCATCCGCTTTACCGATGTCCCCCGGAT 1442807 31 100.0 33 ............................... TCTTGCACTTGGTGGAAGTATTTTGATGATAAG 1442871 31 100.0 33 ............................... GTTATATTTATTTATTTTTTTGCTGTACCCTTT 1442935 31 100.0 35 ............................... ATCTTATCGGCTATGCGTTCAGCCTCTGCTCTATT 1443001 31 100.0 33 ............................... ACGGGTATCTTCTACTATTCCGCTGACTGTTAC 1443065 31 100.0 33 ............................... GACAACAAAACAGGCCAAGTACATAAGCATATT 1443129 31 100.0 34 ............................... TCTGTTTATGAGTACTGTGACAGTCCCATGTTGT 1443194 31 100.0 36 ............................... AAGCATTTCCGTAATACCTTTAAAACAATTACCTGT 1443261 31 96.8 34 .........A..................... CTCGACTATGGACACTTTGGAAATCATTGCCAAG 1443326 31 96.8 35 ..................T............ ATGCGGTAAATTGTACCCTTACCAACCTAATACTT 1443392 30 83.9 34 .........G.-GC...A............. TTCATAGCCATAAAATCAACTCCTTTCATGCTAC 1443456 31 83.9 0 ..G.......C..A.....A.........T. | G [1443480] ========== ====== ====== ====== =============================== ===================================== ================== 16 31 97.6 34 GTCGCTCCTTTATGGGAGCGTGGATTGAAAT # Left flank : ACGAAGACAATGTAATTTTTGTTGGTGGTTATAAGGGATTACTCCATACTATATTGCTGGGGCATAATATGAATGACCTTAAGGGAGGCTTGTACGTTGATCCTAAGACATTGCTGCCTCATGGGCTTGTGAAATTACAGCAGGTTATTCATATATAATTTATTCAGTATAGTTCACCTATTAAGTAAAGATGAGAATGGTGTAGCATCACACGTATGGTATAATATATTCTTTTTTGATTTGTATAAAGGGCTTAATCAAGAGAAGATGTAGGCTTCTGATTATTTTGTTGGCGATATGAAATGAAAAAAGTATAGTAAAAGTATTAAGTGCGAATGTCGAGTGAACATAAAATCCTTGGGAGATTCGCACCTAAATATTTGAGTTTAATACGTGGTTTGGAGTGAATGTGAGGAAATAAACATGTTATAATAACATAAAATAGGTATAACTATCTAAATGATAATGGGAAATAGATAATATATTTGTGAATTATTGCT # Right flank : TAACTATGGCAATACATGAAGTCTACGAAGACAAGCTGCTTCCATGCAAGGTTGCAGTTTATGTGATATACCACGTAAGCAATATGCTTATATCATTGAAGCGTCTCCATTTGGAGTGGCTTCTAACGGACAATAACTATGTAAGAAACACCCTAAACCTAAAATAGAATACATAATTTCATACAGTCAATTGCGCATCTTTACACAGCAGAGAGGGGAGTGTGTATGAAAAACAAACGGATAATACTCAAATACATCGCACTTGCCCTTGGCAATATTGCAATAGCTGCATTCATACTGATTCTGTATGTAGGATACGCCAAGAATGTCAGGAGTGACAAAGAAGCAGCGGCGCGGGAATCATTTACCGCGGCAGTAGAATCCACTGCTCAGTTATCGTATGGATATATGAGTGGCCAGCAGAATGAGTGTGACAGCTGGGCTGCATATCTGGAAAATCATGGGTATTCAATGGAAGAGGCGATTAAATATCTGAAAGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTTATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 1450625-1451825 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL870809.1 Clostridium sp. D5 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1450625 31 100.0 34 ............................... TAAACACATCTTTACACTTCCTGTTGTTGATTTT 1450690 31 100.0 34 ............................... GGCTGAGGTCAATAACAGCATAGATGAGCAAAAT 1450755 31 100.0 33 ............................... CGGGAACAATGGCAAGATTTAACCTGGCTATAG 1450819 31 100.0 35 ............................... ATCCGTGATTGACTGCAATTCGCCTAGTAATGCAC 1450885 31 100.0 32 ............................... GCCATTATTTTATCCAAAAGTATTTTCATACT 1450948 31 100.0 34 ............................... CTCTTGGTAGTATAAAACCTTCGCTATCATGCAT 1451013 31 100.0 34 ............................... CTTTACCTGCTTTTCGAATTTATCGTAAGGCTCC 1451078 31 100.0 34 ............................... TCTGCTAAGATACACGTATGTGTATGTCGGAGTA 1451143 31 100.0 33 ............................... AAAAACACGGCAATCGCTACGACAATGACAGCC 1451207 31 100.0 34 ............................... TTTTAAACACAGATCCATTAAATTCATATCCTGT 1451272 31 100.0 34 ............................... AGGATATCTATAGACGTGGATGGCAAGGTAACCT 1451337 31 100.0 36 ............................... CATGTTGTCATGCAGGAATCCAAAGCTCTCCATCGT 1451404 31 100.0 34 ............................... CATTTGATGGATTACGTGTTACCCCGTACGCTGT 1451469 31 100.0 35 ............................... AATGTCTGCAAGTGCATTGACTACATCAGGTCCCA 1451535 31 100.0 35 ............................... TTACCCAGCTCATATTTCGCCACCCGGATACTTGC 1451601 31 100.0 34 ............................... CAAGGTTGTAGCTTATTGCGAGGTCTTTGTGCGA 1451666 31 96.8 34 ..........A.................... ACGCAGATGAGTTTCAGACTTCATTTGCAAATGC 1451731 31 93.5 34 ..........A..................G. TGCTATGTGCATTCTCTGTCTTAACGATATCTCC 1451796 30 87.1 0 ...A..........A......-........C | ========== ====== ====== ====== =============================== ==================================== ================== 19 31 98.8 34 GTCGCTCCTTTATGGGAGCGTGGATTGAAAT # Left flank : TAGGAGTTGTCTTATATTTATCAGCCCACGGTTTATTAAATTACTTAACACCAATTATAGACAGACAAAATATTAAGATGTATAAAATGGTAAAAGATATACAAGGAGTATTAGATAGAAAATTCTCAATAGAAAATGAGGACATTGTTTGATGTAAATTTTGAAGGGAAAAGCAAATATGCTCTACTTTGTTGGTTTTATAAAAATGGCCTGTATTTCTTTTTTGATAAGAAGCATGGTGGTTATCTCTGAATAGCATAGCCAGAGAAGGAAGTGATCTGCTGATATTTTTGTTGACGATATAAGGCGAAAGAGCTAGCAAAAATTAAGTGCGAATGTCAAGTAAACATAAATTACCTGGGGGATTCGCACCGAAATATACGAGAAAATTCGTACGATTTGAAGTGTGTGTGAAGAATAAGCTTGCTTTAATGAAATAAAATAGGTATAATTATCTAAATGAAAAAGGATATATAGGGATAAGTTTGTGCAATATTGCT # Right flank : CAGATATGTTTTTGCAGCCTAACAAGCCGTTATGCAGTCTCTTACCATTGGTTGCAAAGCCTGGATATGCAGAATTAGCTGCATTCGAAAGCACAGCAAGTCATATGTTTTAAATAAGGTTTAAAGGGAAATGATATGCTTGGTAAGCTTGCCGATATTTCTTACAGGTTGAGAAAAACTTTATTAATTGGTTAGAGGAATGTTTCAAAAATGTCTATGGCAAAGCAGAAAGAGAAATATATCTTCTCAGAAAGCAGCGGCCTTATTTCTTTTCACGATAGAGACGGTAGCAAGTCTCAAGATAAGAAAAATAAGTTTTATAAAAGCAGGAGAAGGCAATAAAATGAAGTATGAAGCTATTATGAAATTTGTTGAGGCTACCAATCAGAAAAATTTACCAGTCATCATTGAAGTGATGTCAGAATGTTTTTGTTTCATCGATACATATGGTATTAAAGAAAACAAGGAACAAATGAAAACGGGATGGCAAGTGTTTTGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTTATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //