Array 1 10406-10037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNES010000045.1 Vibrio fluvialis strain GCEnv2 NODE_45_length_10875_cov_19.126442, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10405 28 100.0 32 ............................ TAAACCTGTTTACCTGGTGTTAATGAGTGCCT 10345 28 96.4 32 .............C.............. TGCAGTATGTAATGTTGGGTCGGTTGACTCCG 10285 28 100.0 32 ............................ TAAACCTGTTTACCTGGTGTTAATGAGTGCCT 10225 28 96.4 32 .............C.............. ATTCTAAAGCGCACGACAAACGTTCTTAAATC 10165 28 85.7 13 .............C...........CTG TATATGAATTTCT Deletion [10125] 10124 28 89.3 32 ...T.........C......G....... TTGACGAAGTACTTTACCCCAACTGCCCGCTA 10064 28 67.9 0 .C.......TAC.C.....AGG.....T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 90.8 29 GTTCACTGCCGTAGAGGCAGCTTAGAAA # Left flank : AGGACACGTCAATCACTCCACATTCTCCTGCGCAGACTTAGCAGGAATTAGGTTAGATTATGTGGATCAGTTTTCGGTGCAAATCAGAGGGTGAAGTGGATCAGTTTTGGATGCAATCTAACAACTAAATGTTCACTGCCGTACAGGCAGCTTAGAAAGTTGGTTGATGTTCACGGAAGCCGTTGACATGGTTCACTACCGTACAGGCAGCTTAGAAAAAATACCTGCAGGACTACATCAAAACCCAATGGTTCACTGCCGTACAGGCAGCTTAGAAAGCAATCAAAAGAAGTGGTGACGGTGATTGAAAGTTCACTGCCGTACAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAATGCAGTATGTAATGTTGGGTCGGTTGACTCC # Right flank : TAAAACGGGATTCATGGCAAACGGTCGTGGAAGTTGTATCTTACACAAAAACCTAACGACGTCGATATCAATAGGTTTTTATGTGTATTTATTGGTATATTTAGTGCGTTATTCTGAATTGGTTGCAAGAGACCAACATTAAATTTTTCATAATTGTTTATTGATTTGGTTAAATCATACGTTATTTTCGATAACAACAATGACATTTTAGGTTCGCAAGTATCCAATGATGTTTTATTTCCAGCATTACTATTTCTTACATTGCCACAAAGCATCCTTGTTCATATTACCCAACTAGTGACAGTGTCTCCGTCATTACTTGATACCCAATCTTCTAGCTAGGCGGTGTAGGTTTCCACTATCCAGTTCCAATTGTCGAGCCGTCGCTGCCCAGTTGCCTTGGTTATGATTGAGCGTTTGAACAATGATTTTTTTTTGATACCTATCCGTTGCTTCTTTAAGCCCCATACCTGATTCACTAATCGGCGAAATGTTGGTTG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTAGAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10746-10538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNES010000045.1 Vibrio fluvialis strain GCEnv2 NODE_45_length_10875_cov_19.126442, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10745 28 100.0 32 ............................ GTTGGTTGATGTTCACGGAAGCCGTTGACATG 10685 28 96.4 32 .......A.................... AAATACCTGCAGGACTACATCAAAACCCAATG 10625 28 100.0 32 ............................ GCAATCAAAAGAAGTGGTGACGGTGATTGAAA 10565 28 75.0 0 .....................NNNNNNN | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGACACGTCAATCACTCCACATTCTCCTGCGCAGACTTAGCAGGAATTAGGTTAGATTATGTGGATCAGTTTTCGGTGCAAATCAGAGGGTGAAGTGGATCAGTTTTGGATGCAATCTAACAACTAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAATGCAGTATGTAATGTTGGGTCGGTTGACTCCGGTTCACTGCCGTAGAGGCAGCTTAGAAATAAACCTGTTTACCTGGTGTTAATGAGTGCCTGTTCACTGCCGTACAGGCAGCTTAGAAATGCAGTATGTAATGTTGGGTCGGTTGACTCCGGTTCACTGCCGTAGAGGCAGCTTAGAAATAAACCTGTTTACCTGGTGTTAATGAGTGCCTGTTCACTGCCGTACAGGCAGCTTAGAAAATTCTAAAGCGCACGACAAACGTTCTTAAATCGTTCACTGCCGTACAGGCAGCTTAGCTGTATATGAATTTCTGTTTACTGCCGTACAGGCAGGTTAGAAATTGACGAAGTACTTTACCCCAACTGCCCGCTAGCTCACTGCTACACAGGCAAGGTAGAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //