Array 1 20764-18379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBL01000008.1 Neisseria canis strain ATCC 14687 NODE_8_length_87398_cov_33.5317_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 20763 33 93.9 32 CT............................... AATTTCCTTTTTGATTGATAAACACCGCTTAA 20698 33 97.0 36 A................................ TTGACTCCGTGAAGTTGGAAAAGGGCGCGATTGCTA 20629 33 97.0 32 C................................ TTGTTGAGCCGTATGTCGGGTACGCAAACCGA 20564 33 97.0 33 A................................ ATTGCATCGGACGGTATACCGCCTATTTGCGAC 20498 33 93.9 32 TG............................... AGATTGTGCGGATTTGGCCGCGGCAGCGGCTT 20433 33 93.9 34 TA............................... CTCCTTGTATCGCCAAGTCTTACCATCAAAAACG 20366 33 100.0 31 ................................. ACAAAGGCCGCCGCAAGGGGCGCGGTATCAA 20302 33 97.0 32 .G............................... TTGCCGCAGGGCAAACGATTCAAGCGCCGATT 20237 33 93.9 32 AT............................... CGTTTCCAATGGTCATGCTCTATCACAGCCTT 20172 33 93.9 32 AA............................... AATCAAACAATCCGAGACATCTATCAAGGCGG 20107 33 93.9 35 AT............................... AGTTGTTTGCTTTGGAAACGGCGATGAGGGTAGGG 20039 33 97.0 32 .A............................... AGTAGCCTGTGCTTTAGGTTTCTCATCAAGAG 19974 33 93.9 36 CA............................... GCGTTTTTATGGGTTTTGAAATGACACAAGTAACTA 19905 33 93.9 32 AA............................... GCGATATTGCCGCTCATGCGAAACGCGCGGGC 19840 33 97.0 33 .T............................... TGTTTATTGAGGCGAAATCTTACAATGAAAAGC 19774 33 93.9 31 TG............................... CATCATGCCAAATTGCAAGGCTTAAGCCGCC 19710 33 97.0 32 T................................ TACCAATCCATATTTCTATGGATTTTTGGGGG 19645 33 97.0 31 .G............................... AACAGCAAGTATTTGCCAACATAATGCGCGA 19581 33 97.0 32 .G............................... ATCTTAGGTGCCGCGGGTATGTATGCCAAGTT 19516 33 97.0 33 .G............................... ACGAATTGGCCGTGGAAAACGGCCTTTTTAGTG 19450 33 100.0 33 ................................. AGACGGCCTTATTGCGCCGCCCAATACAGCCGC 19384 33 97.0 32 A................................ TACTTCCCAGATTTCAACAAACCATCCTTTGC 19319 33 93.9 33 TA............................... CAGGGTAGCATACAGATGCTGGAAAATGCAGCT 19253 33 93.9 33 TT............................... ACCATACCCGAGTTGGGTCTTCGTGTTAGGGTG 19187 33 97.0 31 T................................ TAAATTTTCGGTCGCCACAAAATACGAATAT 19123 33 93.9 33 CT............................... CCCTTTACTAGCAGCCTCTCTAATTTTTTTATC 19057 33 93.9 32 AA............................... CCATTGGAGAAAAAAACATGTATCAACTATAC 18992 33 93.9 33 AA............................... TCGACTTGCTTAAAGAGCAAGGCGCAATGACCG 18926 33 97.0 33 .A............................... TAAATTTTCGGTCGCCACAAAATACGAATATCT 18860 33 100.0 38 ................................. GCTGATGCCGCCGGCCATTTCCAACAATTTGGCAAACG 18789 33 100.0 32 ................................. GTTACCGTAAGCAATATTGTTTACAGTAGCCG 18724 33 93.9 32 AT............................... TTCAGATTGCCGGGCTTGTTTTTGTAAAACTC 18659 33 93.9 32 CT............................... GATTTGGAAATCGCCTGTGCCTACGGCCAACA 18594 33 100.0 34 ................................. CTACTCTGAGGCGCTGGCCGATGTCAAGCGCATT 18527 33 93.9 34 AT............................... GCGAAACGGCTTTGCCGAGCGAAATGGAGGCTTT 18460 33 93.9 16 TT............................... AAGAAACTCGGCAAAT Deletion [18412] 18411 33 78.8 0 C.T..................A.A.T.....CT | ========== ====== ====== ====== ================================= ====================================== ================== 37 33 95.4 32 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAATAAGGGGAAATAGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCGGCAGGGCAGGCGAGGCTGCGGCGCATCGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTAAAACTGAAGGCCAAGCTGCTCGATACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAAGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGCGGAGTTGTTCTTTAACAATCAGGAACTTGAAATATGCGAGTGGAGCAGAATAAGGCTGTGCTATACTCGTGTTCCGCTTTTTTGAAAACGTTAGCGCACAAAGGCTCTGAATGCTTTGTTTGGCAAGCATTTTCAAAGAGG # Right flank : TTAAATGATGGTACAGCCATTACAAACCAAATTTAAATTTGCTGCATTGTTGTGCCTTGATTCAAAGAAAAAATTTGAATTCAATAATTTATCGATAAATCAAATACTTGTTTTCTGTTTTGGCTCCGGATTTGCCGATTGGTAAGCAAAATTAAGTTGATTTGCTATAAGGTCATCAAAGGGCTACGGTAAAGGGGTAGCTTTGTTTTTCGTAGGCCGGCTAAGGTATAAGTTATGCGGTTCCGCCTGGCATGGAATTTTAAACGCTCCCTCATCGCTATCATCAATCTTCAAATACTTCCAAAGTATTATTTCCGTTCACTCTTTCTGCTACCCCTTTCCCCTTATTTTGCCGCTGCTTCTTAAGCTTTCTGTGCATATTTTTCTTGCGTGCAGTCATTTACACTTTTACACGTCGAAAATTTTTTTACACCAAACTTTACCGCTACCGTCCAATCATTAACGGCTATTTTTCAGGCAGGCATTGTGCTTGATTGGAT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //