Array 1 108549-103157 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTE01000016.1 Spirosoma oryzae strain DSM 28354 Ga0180994_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 108548 30 100.0 36 .............................. AAGCCCGAAAACTCCGCGTTGTCCAGTGCCGTCCGC 108482 30 100.0 33 .............................. GATGATACTGCCACCCGTCGGCTGCGCCAGCGC 108419 30 100.0 35 .............................. TGGCTACACTCATTCGCGAAGAGACGGTTACAGCC 108354 30 100.0 37 .............................. ATCAGACACTGCTGACGATTATCGACGCGCCGAAGGG 108287 30 100.0 36 .............................. GCATGAAGCGAACAAGAACATACCGGTTACCGTACG 108221 30 100.0 36 .............................. ATGGGCAGGCCCGTGCTGTCCACGTTTGCTAAGTCC 108155 30 100.0 36 .............................. TAGATTGATTCGAGATGTAACCGGCTTAGCCAGCCA 108089 30 100.0 36 .............................. TCGTTCACTACAGCCTTTGCCGCAAACAAATCCTGC 108023 30 100.0 37 .............................. ACGTAGTTTGCAGTTTGCCGACCGTTTTTGGGTTCAG 107956 30 100.0 36 .............................. AAGACCTAAAGGATCGCGACAAGAAGGGCAACCCGA 107890 30 100.0 36 .............................. CGTTTTGACTCGCCGGGAAGCAGTACAAACTCAAAC 107824 30 100.0 35 .............................. TGAAGCGCAACGCGTCGGCAGCGGCACCGAAGCCG 107759 30 100.0 36 .............................. TTTTTGGATGGACTGGTAAGGAAGATGCAAAAGGTC 107693 30 100.0 35 .............................. TGCTAGTGCAGGCGTCGCGCCGTAGGCAGTACCAG 107628 30 100.0 35 .............................. CATAGTCTTCCAATCGATCAACGGCTGCGTCAGAC 107563 30 100.0 37 .............................. GTTCATGTAGGCGTATTCGTTGCCGGTGATCGTGCCC 107496 30 100.0 36 .............................. TGATCATTGCCAACGTCGTACTATCTGGCTTAGTCT 107430 30 100.0 38 .............................. GATATTGAGGTTTTTGGTCTTTACGTTGACCTGCTCGG 107362 30 100.0 36 .............................. TTAGCTGGAGCGTTTGAAAAGTTCAATAATAAGGTC 107296 30 100.0 36 .............................. ATTCCCGAATCCACCCTGCCTACTGACATCCCCTGG 107230 30 100.0 36 .............................. GCAATTGGGCTGCTCGGTAGCGGCTATTCGGGCGGT 107164 30 100.0 36 .............................. TATATAAAAAATTAACGTTTGCCTTAGAACAGGCCC 107098 30 100.0 36 .............................. TTTTGATAGGCGAACGGGTTGCTTTGTACCCATGAT 107032 30 100.0 37 .............................. TGAATCAGCAGGATTTAACCGCACCAATTGACCGGGT 106965 30 100.0 37 .............................. GTCATTTGCCGCAACCATCAGCTTGGGATCGTGCCTG 106898 30 100.0 36 .............................. AAACTCAAGAGAGTATTGGCCTTGGGGTATAGACAC 106832 30 100.0 36 .............................. GTTCCAGACTCGCCGAGCCGGCTAGCCGGCGGGCGT 106766 30 100.0 37 .............................. TCACAATCTCTTATTAAATCACACATCATGAATCAAG 106699 30 100.0 36 .............................. TGGGAGAAAGAGTATTTTTTGCGCATCAAGAAGAAG 106633 30 100.0 36 .............................. CCGTATTCTGCCCGAAGACGTCGAAGCATTCAGGGC 106567 30 100.0 36 .............................. AAGATATACGCGATATAGCCGCCTACCTTTACGCCC 106501 30 100.0 36 .............................. GCGACCTACCGGGGCGAGTGCGGTCCCGGCGACATA 106435 30 100.0 36 .............................. AAAGCTGTGCCGCAGGTAGTGCCGCCTATCAAGCCC 106369 30 100.0 37 .............................. CCAGGAAAGGCTTCCAGGATATTTTTCAGCGCGTCGT 106302 30 100.0 34 .............................. ACTGTCTATTCTATACCAATCCGTCGGGCGCGGT 106238 30 100.0 37 .............................. AGAAAGAGCGCGAGTTAATCTTCAATAAGTACGGCGG 106171 30 100.0 36 .............................. CAAGGAATTCAGGGCATTAAGGGTGATACCGGCGAT 106105 30 100.0 37 .............................. GTTGGTACCCCCCACCGGGGCTGAAAGGGTGATACTG 106038 30 100.0 35 .............................. AGGGCTACTTCAACGCGTTCAACAATACGGATTCG 105973 30 100.0 34 .............................. GTTGAATGGGCAGCACGGCGCGGCCACCGCCGGG 105909 30 100.0 36 .............................. TCATGTGACTTGCCTGTATACATCATCTCTCTTTCG 105843 30 100.0 35 .............................. GCCTACAGGAACGGTTGGGTCGCAACGATAAGACG 105778 30 100.0 37 .............................. ACACCAACCGGGCGCGCACTGAGGAACAGGAACCAGC 105711 30 100.0 37 .............................. CGAACGTGATCGTGTCTCCTGCGGCTTCTTTGGCGGC 105644 30 100.0 37 .............................. CTACGATCGCTACGGCGACGGCGGCACCGGTCAGCAG 105577 30 100.0 35 .............................. TTGCCGACAGCTGAATACCGGTTGCGCCCTGGATT 105512 30 100.0 37 .............................. CCAATGGCCGTGACCAGTTTAGGCGCTGCCACGATCT 105445 30 100.0 35 .............................. GCGAATCGACCCGACCCCTATACGCGTTGCAGTAG 105380 30 100.0 35 .............................. TCTACGGCGTAGGCCGGGGCGGTACGATTGAGATC 105315 30 100.0 36 .............................. ATCGTCGTGTTCGATACTCAGGGGATCAACTGGGCA 105249 30 100.0 37 .............................. GCCAGTGACGGGGCCAGAGAAAGAATTTAAGCTCACT 105182 30 100.0 35 .............................. CTGGGCAGCGTCGTCGCCAGATTGCCGCTCGTGCT 105117 30 100.0 36 .............................. GGGCTACGGGTTGACCCTATTCACCCCGTACAATAG 105051 30 100.0 37 .............................. ACAGGCTGAGCAGGTGAAGAACGAACTGTCAGTTGCC 104984 30 100.0 34 .............................. TGTAGAGGGCTGACCCGGTTACGCGCACTGCGCC 104920 30 100.0 37 .............................. TACGTAATTGAATCGCCCAACGCGTTCCACTTTTTCC 104853 30 100.0 34 .............................. GCTTGCCGATTACGTACCTTCCGCTGTTCCTCAA 104789 30 100.0 36 .............................. TTCGAACAGGCAAAGCGCTATAAGCTTAGCTGGTAA 104723 30 100.0 37 .............................. TTAGGGGTTTCATACAGTTCAATTAGAACAAGATCAA 104656 30 100.0 37 .............................. ACGTGTATACCTGATCGTTGGTGCTCTTGTCCTGGTG 104589 30 100.0 35 .............................. CAGCCACAGTTGGCATCGGTGGCGTGAATGCTACA 104524 30 100.0 37 .............................. GTACTACCAGTTCAGTAAACGGCCGCTCATTCAATCA 104457 30 100.0 36 .............................. TTGGTCGAACGCTCGACATTGTTAAGAGCGTAGCGG 104391 30 100.0 37 .............................. ATAGAGATTACATTTTCTACTGAGTTAAAAACTTCTA 104324 30 100.0 37 .............................. AAGTACATGTATGTAGTTGGTGTTTTATGATAATCAG 104257 30 100.0 35 .............................. CATCCTCGTTAGCGTAGGTCACAAACTTGTACTCA 104192 30 100.0 37 .............................. GGCCACGGAGGGCGGTCCGTTAACCAGAGAGGGAGAA 104125 30 100.0 37 .............................. GCAATAGCCGCATGTCCGGCGTCGTTCGGGTGGTGCG 104058 30 100.0 35 .............................. ACCGTCGTCGTGGTCGTGGGCGGGCTGGTATTGCC 103993 30 100.0 37 .............................. GTCAAGGCCATATTCACGTATATCTTGTTCATGTCAC 103926 30 100.0 37 .............................. GCGCTTACGCAGCAGCGCAAACTGTTCGTTGGTCAGA 103859 30 100.0 38 .............................. ATGACACTCTTCAGGTTGATCTTCTCGTTGATGTCCAG 103791 30 100.0 38 .............................. GCTTCAACACAAATCCGGCTACGGGGAAGACCTACGAT 103723 30 100.0 37 .............................. CTTTCCTCGATCACAAGCGCAATACCGAACCTCAGCC 103656 30 100.0 35 .............................. CAGGATCTGGTGCCGGGTGCAGTTGGTGATCTGAT 103591 30 100.0 40 .............................. GTGCGAACCGGGTGCAACTGTATGTGGCCAGCGGTGGCGG 103521 30 100.0 36 .............................. GCAACGTGCCCAGCTTCTGTCGGGCGACCAGCCAAC 103455 30 100.0 38 .............................. GTCGATGGTGGCGTTGTGGTTGCCTCGCCTTCTTCGGT 103387 30 100.0 38 .............................. CGTTGATACGCGGCTGTCCGTTGACGGTCAGGTCGTAT 103319 30 100.0 36 .............................. TATGTGGTTTGTATCTAAAACGGGCATCGGCCTATC 103253 30 100.0 37 .............................. GGTTCTAGCTGCACAATCAGGCCCGCCACTGCGTAGG 103186 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 82 30 100.0 36 CTTCTAATCGTACCTGAGTGGAATTGAAAT # Left flank : CCGTACCCCGCCGAACAGTTCGACGAAGCCGCCTGGAATCAGCTTATCCTGAAAGCCTTTTTCACCGACAAAGACATTACGCAAATTACTGGTCTGCACGACCGTAACAACGACCGTCTAAGGCAGACACTGACCGACTACGCAGCCGAGCGTCGGGCCGCCGGACGCACCTTGCCACCCCACATGGAGGAATTGCTATAGACAGCGTACAATCCGTCGGTGAACGATACGTAACTAACAGATTGTGACGATATAGTAACGGTAAATCGATGTGGTTTTCGGTCGATAAATCGCGTCGATCGGATAAACCATCGTTCTTTGACAAACGGATAGTAACTGCACACAGCGGCCCAGGAAGCGTAACGCGCTGATTATAAGCCGTCGTCGATCGCCGGGGTTTTTCGTATGATTACCGGTCGACGCTTTTTAGCGCAAGCTGCCGGATTGGAAAAATGGGCTGACAGCCTTGAAACCACCCTTTCTGTTCCCTAACTTAACGG # Right flank : AGAATCGGCGGCATGCCCCCCCGGTTGACCTGTATCACTTCTAGTCGTATCTGGCTGGAACCGGAGCAAGAAAATCCTGCGAATCCTGTAATCCTGTCTATTCCTAACCGGGAACTACAAAAAAGCAGTTCCCCGTACACAGCTGCTATGCGATAGCCGACCGTATACGGGGAACCGAAAACCGTAAACTCGACTAGTACCACCGATAAATCAAACCGGCGGAGAGCATGAGCGACGGGGCGCTACCGGACAACTGCCCGTAATTGAAGAATACATTCTGGTATTGCGCCTGAATTTCAGCACCGAACTTGTTCTCGCGCTGCCCGTAGAATTTCACCCCGACGGCTGGCGCGATGGCTCCCCGGAACACCCGACTCTGATCGGCCAGCGTACCGAAATAGTTGACGTAATTAACGAACGCGCCACCACCCGCCATTTGCACGTAGGGCCGGATCGCACCCGCGTTTTCCGCGAAATAGTACGACAGCGATGCCATAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 93305-89587 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTE01000024.1 Spirosoma oryzae strain DSM 28354 Ga0180994_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 93304 29 100.0 36 ............................. GTGGAATGAAAAGTATGGACAACGACGAAAGAACCA 93239 29 100.0 37 ............................. CAGAAACGGCGACCATAGGCATGGCATCGGTGATTGG 93173 29 100.0 38 ............................. ATGACCGACATGCAGTCGAGCATATCCCCCGAGTTCGC 93106 29 100.0 36 ............................. CTGGTAACTGGCACGTAGGGGCTGGTCGATTGGAGG 93041 29 100.0 35 ............................. TGGTTTGTCTGGGTATCCGACGGCGATCCGGGGCA 92977 29 100.0 39 ............................. TAAATAGCGTCGCGTACCAAGCTTCTTCGATAGCCTGTT 92909 29 100.0 38 ............................. CTGTTCCATCTGAAGGTGTCACGTTCACCCATATTGGC 92842 29 100.0 34 ............................. GTTGACCTCTTCCCCCACTCGCTTACGTAGCCGG 92779 29 100.0 42 ............................. CAAGCTGCAACGCTACGAAACCGGGCACCTGCTGGCCGAAAC 92708 29 100.0 38 ............................. GAGAACAGCTCATTGTCGAGCACCTATCCAACTGGTAC 92641 29 100.0 36 ............................. AGTTCAACCTGAAGGCCGAAGACGGGAAGGTGTCGG 92576 29 100.0 38 ............................. TCCTCAAACACCGGCCATCCTGGAAGGAAACGTCACCA 92509 29 100.0 38 ............................. ATGACCAGCAGTACCAGGTAGCTTTTTCCGATGGTCAC 92442 29 100.0 36 ............................. CTAGTGGTCAGTGAGCTACTTAAATCCTGTTCGATG 92377 29 100.0 37 ............................. GGAGTAGGCTCGGCTTGCTGAATTGCGTCGGTTATAG 92311 29 100.0 36 ............................. GCGTAGGTGGGTTTGATCGGCTCATGTCAGTTCGCG 92246 29 100.0 35 ............................. CAGTCGATAAACGGGCATGGCCCCATACTTACGTA 92182 29 100.0 36 ............................. TTCGCGCTTGTTGGCAAGTCGTATGTCGCCCGCTGG 92117 29 100.0 37 ............................. CGCTGAACTACTCGCCTACGAGTCAGGACCTGACTGA 92051 29 100.0 37 ............................. CAGGTTGCCCTACGCATCACAACTGGTAACGATGGGG 91985 29 100.0 38 ............................. CGAGACCAATGCCACGACGTTCGTGCATAAGCGGTTCG 91918 29 100.0 37 ............................. CAGCACCTGTTGTGGTACAGCCTACAGACGCCACAAC 91852 29 100.0 38 ............................. GTAATTGTCGAGCGGACGTTGTTGACCGTTGCTCCTGC 91785 29 100.0 36 ............................. CGTGAACTACCAGCTGACCATTGACGAGCGGTGGAT 91720 29 100.0 36 ............................. GCGCTAAAATGCCAGTAGGGCCGCTGCACAAGTCGC 91655 29 100.0 37 ............................. CACTGTTCCCAGAGCCTGATGAGGGGCAGGTTCCAAT 91589 29 100.0 38 ............................. AGATCGTTTCGGTGTAGGTGCCGAAACGGTACCGGTGG 91522 29 100.0 35 ............................. GGGGCATTTCCAATTGATTTTGTTATCGCGGCTAG 91458 29 100.0 37 ............................. CTATTTGTCGCCCCCCTACCGTCATTTACGTTTCCGG 91392 29 100.0 37 ............................. CCCGTTTGCTGACTACTTATTCTGGCGCGTGACGCCC 91326 29 100.0 35 ............................. GTAGAGCTGATACACTTTCAACTGGAACGGATCTA 91262 29 100.0 36 ............................. ACACGAGTATGCGGGTACGGGTGCAGGCCAGCCAGA 91197 29 100.0 36 ............................. GTAAAACTCTTGGTTTTATACCTAATCGTTCCCATG 91132 29 96.6 37 ....T........................ TTGGACAAGGCATTGTTGCGCCGCTACTCATATCGAA 91066 29 100.0 38 ............................. ACGCATTGACACGGGTAGCGCCTGTCGAATTGCGCGTG 90999 29 100.0 36 ............................. GAGGATTATGCGGCCATGCGTCTGACGAAGACCACG 90934 29 100.0 37 ............................. CGAACGGGTAAGTCAGGTAGCGACTTTCCAGATCCGA 90868 29 100.0 37 ............................. CTGTTCCCGGCTGAGGGGGGCCGTGTTGGTGTGGTGA 90802 29 100.0 37 ............................. TTGTTGAGAATCGATACCAGTGACGCCCCGGCCGCGA 90736 29 100.0 39 ............................. GAAGTGGGCAAACGTACGGGTTAAACGCCATTACGATGG 90668 29 100.0 38 ............................. CTCACTGATATGCGGACCATCACGGGGTCGATTCGTGG 90601 29 100.0 38 ............................. CGAATGATGCTGACGATCTTGGCGAACTTGCCGGCCAT 90534 29 100.0 36 ............................. ATGAGCACCGTAAGAATAAGGGGCAACCCATGCGGC 90469 29 100.0 36 ............................. ATCTACTACGCGCCCACCCTGAAGCAGCAGGCGACC 90404 29 100.0 37 ............................. AAGGTACACTATCACAACTCTTCGCGCTCGCCCCCTT 90338 29 100.0 37 ............................. GTTGTTGAGCCGGGCTAGGCGGGTTAGGGGGGATTAT 90272 29 100.0 38 ............................. CTATCAACGTGTCTTTTGCCAGTAGCTGTCGGTCACGG 90205 29 100.0 34 ............................. CAGTTCATGCTGGGACTGTCCGTTTCGGTGTGGA 90142 29 100.0 37 ............................. CCACCAACCGGCGCAAGGAAGCCGCCCAGGCCTACGT 90076 29 100.0 37 ............................. CGTGCGGGCGTTAGCCAGAAAGTCCACGATGGGCGTC 90010 29 100.0 35 ............................. CTGCCTTCCAGACCCATGCGCCAGAGCGACTGTCC 89946 29 100.0 38 ............................. GTATTACCTCGATGGCGGCAACCAGGCCTCCTATTTGC 89879 29 100.0 36 ............................. GCGACGCCAGTGATGCCTACGGCGACCGGCCCAACG 89814 29 100.0 36 ............................. AAAATCAGGGCACCGGCCGGGACGGCCAGCAGACTC 89749 29 100.0 40 ............................. GCGGAAAAACGCCCTGAGTGGCTTTTCTGGCTTTGAGTCA 89680 29 100.0 36 ............................. TTGGGCGCACCCACGTTGTTGGTCACCAGTAGGGCC 89615 29 93.1 0 ..........C....C............. | ========== ====== ====== ====== ============================= ========================================== ================== 57 29 99.8 37 GTATCAATCGGACCTTCGGGTATTGAAAG # Left flank : TCTGCTGAAAAGGTTGATTCCGCTGCATATTCACCGTTTTGTCGAAGTCGTCAGCCCCCCGGCCTTTTAGCAGTACGGTAGGCTGACGACTTTTGGCCTTTGTTTTGTGTCTTAAAAGCGGTCGTTACGCGTTTAAAACAGCTTTTTTGTACCTT # Right flank : TATAAGTGCTGGAAACCGGTGTATTTTTGAGTTTAGCTGATGTTCGCACCGAGATCGGCAACTATATCGATAACTATTATAATCCGGTGCGGAAGCACTCCAGCTCACAGTGCTACTGTCCGGTTCAATTTGAATCTAAACATATCTCTCAAAATTAACAAGAGACCGTTCGCTCAAACCCGACCACCCCAAATTGAGGTAGCTAACACATTTAGGGTTAAATCCGCCACGTAAGACCAGTAAAGAACTGGTAAACGATTATGCGATATTTCTTGCGATTTTTCGCCCAGTACGACCGCAGCAATATGAAAGATTGTTTTTAGTTGGTCCGCTCAGGCATGGGGGGGCACATTCGTACGAAACGTTCCATTAAGTAGCGAACATATATCAGGGCCTTGGGTCCAAAACGGGGCCACCGTGGCGCGGCCGTCCAGTCGGACAGCCGAAGCAACCGGAAAATAGCCCTTCTTTATTCCTAGTTCATCGATGATAGTAATCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAATCGGACCTTCGGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 67514-72052 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTE01000007.1 Spirosoma oryzae strain DSM 28354 Ga0180994_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 67514 30 100.0 37 .............................. ATATACGAAGGCGCGGCTTCGCTACACCCGTGATTAG 67581 30 100.0 36 .............................. GTAATAGCCACCCCCAAGACCGTCCGTTGCATTGTT 67647 30 100.0 36 .............................. TGTTGGCCGATGCCTTCAGGCTCGCCACCCCTAATC 67713 30 100.0 37 .............................. TCGTTCACTACAGCCTTTGCCGCAAACAAATCCTGCG 67780 30 100.0 37 .............................. TTGATCCCGACAAACTCAGCGAACAGGGCAAAGCCTA 67847 30 100.0 37 .............................. CTCCTTAAACGCGTTCAACACCTATCGCGTCCGATAG 67914 30 100.0 36 .............................. TCGTTCACTACAGCCTTTGCCGCAAACAAATCCTGC 67980 30 100.0 37 .............................. ATGGTAATGCCCTTCTTAATATAGACTGACTGGTCGG 68047 30 100.0 38 .............................. GAGCGCCGGGGCGACTGGGACTCAACGAGGTGGTCGCC 68115 30 100.0 36 .............................. AAAGAGGGGGGGCGTCGCAACGGGGGGAGTTTTTTT 68181 30 100.0 35 .............................. GCATGGTTGCTAATCGCCTTAACGGTGGCTGCTGT 68246 30 100.0 37 .............................. GTTCATGTAGGCGTATTCATTGCCGGTGATCGTGCCC 68313 30 100.0 36 .............................. TCAACAGATTACGCTCTTACGTTGGACTGTGGTAAA 68379 30 100.0 36 .............................. ATTGTCGAAGCTGTTTTTCAAAACCGCGAAAAATTC 68445 30 100.0 36 .............................. GCGTTTCTTCTTTCTCCTTACCTGTGTTAGCGAAAA 68511 30 100.0 35 .............................. CTCTCTATCAACTTCCCGCTTCTCCTGCTTTAGTT 68576 30 100.0 36 .............................. ACTATAAGTTAGAGGGTGACATACTAGCGTTTCATC 68642 30 100.0 36 .............................. TCGCGCTCGGTCGACAGCGACAGGTTCCAGATCAGT 68708 30 100.0 34 .............................. AGTTTCAACTGGCTTACCAGAAACGTCGGTTGAT 68772 30 100.0 36 .............................. TTGCTATTCAGGTCGTTTGTTTTTATCCGCTTCACA 68838 30 100.0 35 .............................. GTACAGGCGTTGGCCGGGCGAATTTTTTGATCATT 68903 30 100.0 36 .............................. TCGGGCATTGCGCTTAGTTACGCAGCGGGTTACGAT 68969 30 100.0 35 .............................. GTATTGGCGGTGGATACAACAATGAAGGTAGTCGT 69034 30 100.0 36 .............................. AGGCGGTGTGCTGGACAATGCGGCACGTATGCGGGC 69100 30 100.0 35 .............................. AGCGAAACGCAAAGATGCTACAGGCCGATACTGCC 69165 30 100.0 35 .............................. CCGCTTCGGATACGTATCGTAGGTCGCCTGGCTGA 69230 30 100.0 36 .............................. CTGAATACAGGCTTCGGCATATGCGCTATATGAAAC 69296 30 100.0 38 .............................. AAATCAACCGACGTGCCGTACGAGCTGCGGCCTCTCAA 69364 30 100.0 36 .............................. GTCGAGGGAGCCGTGCTTTTTCTTCAGCTGTTCATA 69430 30 100.0 35 .............................. CTACTACCTAACCCCCACCTAGCCCGGCTCAACAA 69495 30 100.0 35 .............................. AGGAACGCCCGTGATGGTACCGTCGCGCTTGGCTT 69560 30 100.0 36 .............................. TATACTCATTTCCCGCGCGTACGTCGTATTGCACAA 69626 30 100.0 35 .............................. TTGCTTATCGCTCAACGACTTAAAACGCTTTTCGT 69691 30 100.0 36 .............................. AAGGAACTACCCGGAAGATTGTACAGGGAACTGACT 69757 30 100.0 39 .............................. TGAACAGTTGCGAGACGCCCGAAACGGCCATGTTCAGGT 69826 30 100.0 38 .............................. GCCGCAACCGGCGCATAGGTGTTGAGCATGTTAAAGCC 69894 30 100.0 38 .............................. AGGTAGCCGCTGCCACAACGACCGGCGTGGCCATTGGT 69962 30 100.0 37 .............................. GGGTATGCGCCAATTCTTAGTTGTGTCGGCGATGGTA 70029 30 100.0 35 .............................. ACGGCGTCCAATACCGGCTGCTTACCAAGCAGGAC 70094 30 100.0 37 .............................. AACAACCTCTACGCGGGGCCAGACGCGAACAGCGCGC 70161 30 100.0 38 .............................. TAAAGGGCGACGGGCTGTATCTAGCAACGCAGGCAGGC 70229 30 100.0 36 .............................. ACGTCTGCGAGTTGGCGGCTGACGTAGCGGCTGATT 70295 30 100.0 36 .............................. CGTCATTTGCTCGTCTATCTGTTCTTGTGTCGGCTC 70361 30 100.0 35 .............................. TCGAGCACGACCACTGCCCCGCCGTCGAACACCAC 70426 30 100.0 35 .............................. GACACGCCGGACAATTGGCGCCGGGTTCTACAGCA 70491 30 100.0 35 .............................. CCCATCACGAGTTTGAGTTGGGGGTAGATATAGTT 70556 30 100.0 36 .............................. GTACATCGGTATGCGGGGCGTTCACATCAATAACTA 70622 30 100.0 39 .............................. CCCTTGTGAAGGGGTATTTGAACAACACGCTGGCAAAGG 70691 30 100.0 38 .............................. GCGGTACGAAACAGCCATTTTTCGCACACTACTGCTCA 70759 30 100.0 37 .............................. ATTTTCAGTTCGGTACGCCCCGGATCTGGCTGCGTCG 70826 30 100.0 34 .............................. ATCGGTGTCGGAAATACAGGCGAGATTGGGTCGC 70890 30 100.0 38 .............................. TAGGTTGATCCCCATTTGTTAGCGGTTTGATATGCGCA 70958 30 100.0 37 .............................. AGTCAATGCTGCGGACGTCGTGGGGATGTGGGAGGTG 71025 30 100.0 36 .............................. GCGGGTAGAAACATCGAGCTGGTACCCACGTAATTG 71091 30 100.0 37 .............................. CGCAGAGGTGCCAGCGAGAGGTCGCTGAAGCGCGCCA 71158 30 100.0 37 .............................. TCGACTGCTCGGCGGGGGCTGGTGGATCGGGGTAATA 71225 30 100.0 38 .............................. AGGTAGCCGCTGCCACAACGACCGGCGTGGCCATTGGT 71293 30 100.0 37 .............................. GGGTATGCGCCAATTCTTAGTTGTGTCGGCGATGGTA 71360 30 100.0 39 .............................. CGTAGCTGATCGCCTTGATACTATTGGCGACGGCTACGA 71429 30 100.0 35 .............................. GTGTTCATGTACTGGCTGTTTTCGCGCACACTTGC 71494 30 100.0 37 .............................. ACCGTTACAGAGCGAGCGATTATTGAAGCGAAAGAGA 71561 30 100.0 36 .............................. ATTCGATACTGATTTGCAGGCTTTAGGTTCGATACG 71627 30 100.0 37 .............................. AGAACCTCCCCTAATTCGATGGTAGAGAAAGGAAACA 71694 30 100.0 34 .............................. CGTGTACGCCCGGCACACGGTCGAGGAGCGCAAC 71758 30 100.0 36 .............................. GTGGACGTGGTATCTCGACGAGAAAACCGAGCGTCT 71824 30 100.0 35 .............................. CGGCGAACCGGCAAGGGGGCGGGGTGTGGGGGTTA 71889 30 100.0 37 .............................. GTTTCGAGATGGCCGTCACTGGAGCCAGTCAGCTGGA 71956 30 100.0 37 .............................. TACGAACGTCAGAAACGTACAGCATTTTAGCGTTGAG 72023 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 69 30 100.0 36 CTTCTAATCGTACCTGAGTGGAATTGAAAT # Left flank : TTCAGTCATTCAAAATTGGATTATGTACGTTATTCTCGTGTATGACATGGGGCAGAAGCGCGTTGGTAAGATGCGCAAACTCTGTCGGCGATACCTGAACTGGATACAGAATTCAGTGTTCGAAGGGGAGATGACCGAAGTCCAGTTAAAAGAGTTGCTCTACGAAGCCCGTCAGCTTATGAATGAGGCCGAAGACAGCCTGATTCTGTTTAAAAACCGCGATCAGAAGTGGTTGGACAAGCAAATCGTTGGCGTAGAGCGTCAGTCGACAGACAACTTCTTGTAGGCACCTGTCGTCGACCGATTCAGCTCCATTCTTTGACGTACTAGTTTATGCGCTCAATTTGGGTGATTTTGGCGTAACTGTCTGATTACAAAGGGTCGTCGATCGGCGGGGGTTTTCGTACTATCATCGATCGACGATTTTTTGGTTAAAAAAGATACGGTACTATATCGCTTTACAGGCTAAAAAAGCCTTTTTTTATACCCAATCCCCACGG # Right flank : TGCTTGGAGTTATGCCGGCTGCTGCACCGGGTCGGGACCCTCTAATCGTATCTGAATTTGAGCCTTACTCAAACTGTGCCCAAAAAAAAGTCCTGCAATTAGCTAATTGCAGGACTTCGTGCACTCGTAGGGATTCGAACCCCAAACCTCCTGATCCGTAGTCAGGTGCTCTATCCAATTGAGCTACGAATGCGATTCACATTTTTGTGAGGTGCTCTTTCCAATTGATGTCGAGCGCGACCCCGGTACGAATGTGTTGCACTGTGTGCGTTTCCCGTTGATTGGGAGTGCAAAAGTAGATAGAAAAAGGGCCTGTGTCAAGCTAATGACCAGAAAAATTTGCAGGACGCTTCGATAAAAAGGCCAGTACACCCTCGGCTGCGTCGGCAGAACGGCCCAGTTCGTTCTGATTCTCAGCCTCCTGCTCCAGCATCTGGTCGAGGTCGGAGTAGAGCGATTTGGTCAAAACTTTTTTCATCGCGCCGATGGCGCGGGTAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 3540-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTE01000066.1 Spirosoma oryzae strain DSM 28354 Ga0180994_166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3539 29 100.0 37 ............................. ATCAGAAGTTAGCCGAAAAGCTGTTCGATATCGGCGT 3473 29 100.0 38 ............................. TCGCCACCTCAGCACCCAGAATGACTATTCTGGCAATC 3406 29 100.0 37 ............................. TCTACTACGACGGCGAAGCCAGCGCCTTTCTGGAAGA 3340 29 100.0 37 ............................. GCGGCTCGACAGCGGCAGTGCGGCCCGTTTCTTCTAC 3274 29 100.0 36 ............................. GTCAGCTTGGTGTAGAGCGATGGGATGGCCCCGAGC 3209 29 100.0 37 ............................. ACTTTTCAGCCGATCGGCTATCGGTGCTCGCACGCGG 3143 29 100.0 37 ............................. ACTTTTCGCGGGTAAGCTCAATGTAGGGGCGCACCTT 3077 29 100.0 36 ............................. CCGTGACGAACTGGTGTACGAAATCGTGCTCCCGAT 3012 29 100.0 37 ............................. ATTGATGAACAGCGGGCAAGGCTGGAACTGCTACGGG 2946 29 100.0 39 ............................. CTTATCCCTGCGCGCCTGCAACCGGTGCCAGCGAGTTCA 2878 29 100.0 38 ............................. CTTATCCCTGCGCGCCTGCAACCGGTGCCAGCGAGTTC 2811 29 100.0 37 ............................. TCGTCGGGCGTCGTGGTATCCAGCGGGTCGTAGTAGA 2745 29 100.0 38 ............................. ATGTGCAGCTCTTGACAGAGGGCCAGCTGCGAGGGGTA 2678 29 100.0 36 ............................. GCGGCATATGCTCAATCCAGGCCGTAATGCTCTCGG 2613 29 100.0 35 ............................. TAGTTTTCAGCTCACTGGTGTCGGCGACGCTTAAG 2549 29 100.0 41 ............................. GTTAAATTCCCACTCAAACGCAGCCAGTAGACTGCGCGCGG 2479 29 100.0 36 ............................. GTGTTGGCCACCTGCCCGTAGGCCAACGTGAGTTGC 2414 29 100.0 36 ............................. ATAAACTGCCTAAAGCCCGCAAGCGCTACTACATCG 2349 29 100.0 37 ............................. ATGTTTCTGAAAAAGATCAAGGAACTCCTGGATTTCT 2283 29 100.0 38 ............................. ACGGCTGGAACGACCGGGAAAACGGGGGCTTTCTGAAC 2216 29 100.0 37 ............................. TTGCCCAACTGGTGTATACCCAGCTTAGCGGTACGGG 2150 29 100.0 37 ............................. TTTTACGGGCTGCGCTGGCATTTATAGGGCAGGCAAT 2084 29 100.0 38 ............................. TCGTATACGGGTGCTGCGTCGGTGCCGCCGGTTCGCTT 2017 29 100.0 35 ............................. GTTTGTCGAGGTCTTCGCCAACGCCGAGCACGACG 1953 29 100.0 39 ............................. AAGCGTGTCGTATACTGAGCGTTGATACGGACGGCAAAA 1885 29 100.0 36 ............................. TTGGGCAATAGGTCGCGCGTCTGTGTGATTTCGATG 1820 29 100.0 35 ............................. GAAACTCATCGAAGTCAGTGTAGTAGCGCACCGTA 1756 29 100.0 35 ............................. TAACGCAGCCGCTACGTCCGAAACAAATTCTGCCA 1692 29 100.0 35 ............................. CATGAGATCAGTCATTGCGTGGAAGCGGCCCGCGT 1628 29 100.0 38 ............................. CCTGCACCTGAACGGCTCAACCGGGGGCTTTCAGTTGT 1561 29 100.0 38 ............................. GTGCCGGCTTTTCTTGAGTTGAAGCGCATCCAGCCCGC 1494 29 100.0 36 ............................. GCGCACGTTCGCCGGGAAGGTGCCGGACGGCTACCG 1429 29 100.0 39 ............................. GACGGTGGTAAGAAGGGTGGTGACGGAGGTGTGGGTAAG 1361 29 100.0 38 ............................. TTGCTGATTTGATGGCTTCTTTATAGGTGAGCCACTTA 1294 29 100.0 39 ............................. GCAGGCAAGCGTCACCGGGTCATAGTCGATACGGGGGGC 1226 29 100.0 39 ............................. AAATGCTGATAGGTCGACAGGCGGGCGTAGCCCTTGCCG 1158 29 100.0 38 ............................. GATTCCCTTCAGTACGCCAAGCTCAGCCAGACCCAGCA 1091 29 100.0 38 ............................. ATGGCAGCATTCAGGCAGCCACGCTGTCGGCGGACCTG 1024 29 100.0 38 ............................. TTCGCCCTCGTCAGTCAGCGTGGCCAGGATACGGTCAC 957 29 100.0 34 ............................. GAACCCTTTCCTTTTGAGCCTAACCCGATGCCTG 894 29 96.6 37 .................A........... TTCAGGCAGCCATCGATAGCGAAGCGGCCAAACTCTT 828 29 93.1 36 .................AA.......... TCGGTACGGTCGATGTCTTCGGGGTCGTGAAACGGG 763 29 96.6 37 ........T.................... CGCCTATTGTCGTGCTGGTCGATCAGACGGTCGACGT 697 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 44 29 99.7 37 GTATCAATCGGACCTTCGGGTATTGAAAG # Left flank : TCTGCTGAAAAGGTTGATTCCGCTGCATATTCACCGTTTTGTCGAAGTCGTCAGCCCCCCGGCCTTTTAGCAGTACGGTAGGCTGACGACTTTTGACCTTTGTTTCGTGTCATAAAGGCGGTCGTTACGCGTTTAAAACAGCTTTTTTGTACCTT # Right flank : ATAAGACCTAAATACAGGGCAAAACAGGAATGAGTTGTTGAATAGGCTGGTCGTTTAGGACCCGGTCTCGGAGTTCGTCCAAGCCCCAAGTTGCTTATAGCCGCCAGCGGAAACACTGACCTACCCCTAGTAAACTGGACCAGCCTAAAGTAGAGAGTTCGGGCGGTCCGCCGCAGCAGCGATTTCTCGATAGTTTAATAACCAATAATCGCTGATGAAAAAGACCGCGCGGCGGCCGCCAAATTTACTGAAGCGCAGACGGTTGGCCGCTGCCATTGTTTTTGCGCTCCGCCAAGCTGACACGGGTACGGTAGTCGCCGAGGTCTGCCGTAAAATGGGCATCGCAGCGGCGAACCGTCAGTGAGGCTACATTCTACAACTGGATTGTGCTATGAACTATTGGTCTGTCAGGATTAATAGTTGCTGCGTAGAAGATGGAAGTCGGCCTTCTGGAATCGACTTGCAGGAGTTGGTTCCAAACCACTGTATGCGGCTTTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAATCGGACCTTCGGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //