Array 1 117574-121805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000109.1 Aliivibrio fischeri strain FF227 FF227_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117574 28 100.0 32 ............................ TACTGTTGCTGACCGTTCTTTAAATAGCACAC 117634 28 100.0 32 ............................ GAGCACGAACAAGCGCAAGCCACAATCCGAAA 117694 28 100.0 32 ............................ TATAAATGGAATCCATTGACGGTTACAACTGA 117754 28 100.0 32 ............................ AAGAACGCAATCACAGCAGGTGATGTCGCGGC 117814 28 100.0 32 ............................ GCGACCCCCTTATCAACCCTATACTTAACACC 117874 28 100.0 32 ............................ TATAAATGAATCAAGTTTGGCGACTTGAAAAC 117934 28 100.0 32 ............................ TCAATTTGATTGGCGTAATCTGATTTACACAG 117994 28 100.0 32 ............................ TGTAGACAGTTGAAACCCGCATAAAACTTCTG 118054 28 100.0 32 ............................ ATTAAACGTGTACACGGGTGTGTATATATTTT 118114 28 100.0 32 ............................ TTGAAAAGTAAGGAATAGCCATCGTCAATATT 118174 28 100.0 32 ............................ ATTAAAGGCGGCTTTTTGCTAGATAAAGATAA 118234 28 100.0 32 ............................ TTGATAGATACATCTCGAACGGCCGGAGAAAG 118294 28 100.0 32 ............................ AAACGGCTTAAACGCTCTTTGAGTTTTGAAAT 118354 28 100.0 32 ............................ CGCATAAAACTTCTGTTAATATTTGCTCCGAA 118414 28 100.0 32 ............................ TATTATGGCTGACTATACTGTATTAATCGGCT 118474 28 100.0 32 ............................ AGACAAAATCAAATCTTTAGAGGATTGTGATT 118534 28 100.0 32 ............................ ATTGAGATGGGTCATGATGGTTTTTAGGGTGT 118594 28 100.0 32 ............................ ATCCTTATAATTCAAATTGCTCTTTAATGCGC 118654 28 100.0 32 ............................ AATCACTGCCGGATTGAACAAGTTAACATTTC 118714 28 100.0 32 ............................ AAATGGAGACCCTCTTCCGCCAACTCTAATGC 118774 28 100.0 33 ............................ ATTAATTCAGATAATGGATAATGAAGGTAATCT 118835 28 100.0 32 ............................ AACAGAGACATTTCAAGCAGACGAATTATTAA 118895 28 100.0 33 ............................ ACAAGTTGTTGACTACGTCGCTCTGAGTTTGAT 118956 28 100.0 32 ............................ CTCACCGAGAGTAAAGTTGTTGCCGGGTCCAA 119016 28 100.0 32 ............................ CGCAGTTTGCATCTTACTTTCCAATGCTTTTA 119076 28 100.0 32 ............................ TGTGGGGTGATAGCGAGGATTATCAAAATGTT 119136 28 100.0 32 ............................ TTCGAGGCTCTTATGATTCGATTGTAATTCAC 119196 28 100.0 32 ............................ TAGAGTAAACAACGCCTTTCGGGTTTCCGTTA 119256 28 100.0 32 ............................ GAGCTGCAAAAGAGTAAGTTACAGTGTAGGCG 119316 28 100.0 32 ............................ TCCCGTTTGGCGAAGGTCTATTGATGGTTTTG 119376 28 100.0 32 ............................ CAACTCACACGTCGAACCTACCTGCCAATGGC 119436 28 100.0 32 ............................ TAATTTTTGATGACAAAGTAGGTATTTCTATT 119496 28 100.0 32 ............................ AATTACCGCAGAAATTGGAGAGCTTGATCAAA 119556 28 100.0 32 ............................ ATGTCAGGTTGTTGAAGTCATAGATCGCACAA 119616 28 100.0 32 ............................ AAATGGCGCAAACCTTAAGCTAGACCACACTG 119676 28 100.0 32 ............................ GGATACATCTTCTAAAATTGAAAATGTATCTT 119736 28 100.0 32 ............................ TATGGTTCTTTGAGTACATAACAGAGGAAGCG 119796 28 100.0 32 ............................ GACGATGCCGTTGAGTTGGCTATCATTCTGTA 119856 28 100.0 32 ............................ ACAACGCTAACAAGGAGATATTTAAGTTAGTT 119916 28 100.0 32 ............................ TCAAAAAAGAGGTGTTGTTGTAAGGCCGAGTG 119976 28 100.0 32 ............................ AATGGTGAGCACCACTCATGACGACCACCAAA 120036 28 100.0 32 ............................ ATATGAACAATTGATTATCGTATTCATAGCAA 120096 28 100.0 32 ............................ ACTAATCCTGAACTCTCTTGCTGTTTGCTCTG 120156 28 100.0 32 ............................ ATTAGGAATGCTCTGATCATTTGTCTTTCTGC 120216 28 100.0 32 ............................ ACCCTTAGTGGTTAACGCTGTTTTAATTGCCT 120276 28 100.0 32 ............................ TTTGATAACTTCACCCATCGGCAATGGTAGTC 120336 28 100.0 32 ............................ CATCTTCAATGTGCATTGGCACGTCAACCATG 120396 28 100.0 32 ............................ TACTAGCAAAGTTAAGCGGAAAGTGGTGTGAT 120456 28 100.0 32 ............................ ATGTGGGCTTTTTTGTTTCTAGTGAAAATAAA 120516 28 100.0 32 ............................ TCGTAAAAATCAAAGAACACATCTCTGTACCA 120576 28 100.0 32 ............................ TACGCTCGGAAAACAATAGTCATTGTCTTAAC 120636 28 100.0 32 ............................ ATCATCACTGTATGGTGCTCACATTCGAAAAA 120696 28 100.0 33 ............................ ATGATGAAGCAATTTCATCGGGATTTCTTGATT 120757 28 100.0 32 ............................ TTTGCTTATCAGTTAACTTATTCGTCATATAT 120817 28 100.0 32 ............................ TTTAAATTATAAATGACTTCTTTCTGTGTTAA 120877 28 100.0 32 ............................ ACTCTGGTATTTCCAAATCAAATGGCATTTCA 120937 28 100.0 32 ............................ ATTCGTTCGTACCAGTCAGCCCAAGGGCCATA 120997 28 100.0 32 ............................ AGCCTCCCTATGAGCCTCTGATGGTTTCATAC 121057 28 100.0 32 ............................ ATCCACCACCAAGCAGCAGCCTGCTTTGACAA 121117 28 100.0 32 ............................ ATTACGTGAGTAGTGAATGTTGTTGCGCCTTT 121177 28 100.0 32 ............................ ATTCAAGGATAGGCTGGAGATTAGTAAGCGTA 121237 28 100.0 32 ............................ TTTCGAAAATTCAGTAATGAAATCACCATCAA 121297 28 100.0 32 ............................ CTAACCTAATTGAACAAAATAGAAACAGTCCA 121357 28 100.0 32 ............................ AACAGAAATTAAAGCCGTTTCTGAATTGGCGT 121417 28 100.0 32 ............................ ATATACCATGCCTTTAGAGTCTTACCGGGTAA 121477 28 100.0 32 ............................ ATATAAACAAAGTATTAGTCTAGCGTTTGGAA 121537 28 100.0 32 ............................ AACAATTTCTGGCCTCGTTGACGTTCCAATGC 121597 28 100.0 32 ............................ AGATATTGTTAATGGCATAGAAATCCTTAATT 121657 28 100.0 33 ............................ ATTTGTTATCGATGCCTTGCACCCTGTTAAGTT 121718 28 100.0 32 ............................ CGACAAGGAGGCGATCTGGCTATTAGAGCTTG 121778 28 75.0 0 ..........AT........A..TT.CT | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGATTTGAATGGTGTAAGCTGGTTAGGTGGGCTTATTGGCTATTGTAACGTTAGTGAAATTACAGTGGTACCTAGTTCGTGTGAATATCGTATTATTTCACGAATTCAAAGCACCATGTCGCAATCTAAGCTTAAACGATTAATAAAACGTGGTTCAATCAGTGAAGAAGAGGAGAAAACTTATAAAGCTAAAATGTTTAGCAAAGGGCTCGATAATCCCTACTTAGAATTAGAAAGCAGTTCTAATGGATATAAGCATAGACGTTATTTACGATTTAGTGCGCCACAAAGTGAGCCGATACAAGGTAAGTTTGATCAGTTTGGTTTGAGTAAGTCAGCTACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAAAATTAGGTAAAAATGGGTATTTTTGCTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTCTT # Right flank : TTGCTAGGTTTTATAAATTGCTATTAGTTGAGGAATTATTGTTTGAGAAGAGAAAGTATTTTGAATAGTTTGTTGTGCATTTTTTTGAATGGTTTGGACTTGGATTAACGGTAAGTTTACCCATTTTTTTATTGCTGTAGGTAGAGCATCAGGGTTAACGAACCATCCATTTTCATTATTACAGATGAGTGTCGACATATTTCCTACGGGGGTTGAGATAACGGGAATACCGCGTCCCATAGCTTCTAATGCAACCATAGGTAAGCCTTCATAGCGAGAGCAAATAACAAGTAATCCAATGTGTGGCCATATGGCATCCATTGAGTTTTGATGTCCGTGAAAATGAAGATTGGAAGGTGAGTGGTTTTGTAAGTCTTTTTCCATTGGACCTGAGCCATAAAAATGAAACTGTACTTTAGATAGTTGATTGGCTAGTTCAAGGAAACGATCAGGGGCTTTTTCATGACTTAGGCGTCCAACAAATGCTATTTGGGTACCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 741-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000119.1 Aliivibrio fischeri strain FF227 FF227_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 740 28 100.0 32 ............................ AAAACAATGGACGACTAAAGCTCAGTACATGC 680 28 100.0 32 ............................ TTATCGACATCGTATGCAATAGCCTCTAAACA 620 28 100.0 32 ............................ ATCCTTAGCGGCCGCCCTTAATAGAATAATAC 560 28 100.0 32 ............................ TATCACTTTTCAGGCAATGGTGCGGAAGGGTT 500 28 100.0 32 ............................ AAAGGCTAATCCCTTATAACCTAGCTGTGCAT 440 28 100.0 32 ............................ TTATCCGTGCTTAACTCACCATCCCTGGCGAT 380 28 100.0 33 ............................ AATCCCCGAGGATAAAGTTGATTTTGCATTTTT 319 28 100.0 32 ............................ AGACTGTACATTTGAGATATTCCTCTCTAGTT 259 28 100.0 32 ............................ CCGTGCGTCTCGAAGTCAACGCTAGATATTTT 199 28 100.0 32 ............................ TTGGGGAGTAACTAGTAACGCTAGATCAGCTG 139 28 100.0 32 ............................ ATACGCGGCAGAAGCCAACCCAGCCACGCCAA 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAGTAGCATCCGTCAGGCTTAACAGCACAATC # Right flank : ATTTTCGGTAAGCGCATTTTTTTCTGCGATAGTGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-808 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000157.1 Aliivibrio fischeri strain FF227 FF227_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ CTGAAAAGGCTCACAAAGAGTATCTAGAACTA 61 28 100.0 32 ............................ ATCATTTGAGGATAAGCGCCGCCAAACTCTTT 121 28 100.0 32 ............................ CTTAACATTAGATATGGTTAAGTAAATACCTT 181 28 100.0 32 ............................ TTATGTGGGATTCTAATTAACTTACACCATGC 241 28 100.0 32 ............................ TAGCCCTAAATCAAATAGCGCGACGATGTAGC 301 28 100.0 32 ............................ AAATTTTGGATTTGATGGTGATTTCATTACTG 361 28 100.0 32 ............................ CGTATATGGAATTCACTAGCACATCTATATCT 421 28 100.0 32 ............................ AAAGCAGATAAAGATAGCGTAATCATGGCGCT 481 28 100.0 32 ............................ TCCCCGCGTTCCCGCGCGGGGATTCTATTTAA 541 28 100.0 32 ............................ TGGACGACGAAGAGTATAAAGATTTTTTAGAC 601 28 100.0 32 ............................ GTACTGAGTTAGTGTGCATCTTACAACCTCGT 661 28 100.0 32 ............................ GCCCGTGACATTAGGGTCTAAGGTGTCCGCTT 721 28 100.0 32 ............................ ACATAGAAAATAGTTTTCATTTTGATTAAAAT 781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTACAGGCAGCTTAGAAAATTACACGGTCTTTAGATAATGATTCAATATCGTTCACTGCCGTACAGGCAGCTTAGAAAAGAGGCCCATTTTTTTATGGTTTTTCCTATTCGTTCACTGCCGTACAGGCAGCTTAGAAAAACCTCACTAATCATTCTAAGTGCAACGTTATGTTCACTGCCGTACAGGCAGCTTAGAAAATAAATCACTCTCTTACTTGTTAGTTAATTTATGTTCACTGCCGTACAGGCAGCTTAGAAACATTGCTGCAAGCAAGACTTATATCTCCTGAGGTTCACTGCCGTACAGGCAGCTTAGAAATTGAGGTATTGTTGATGGTACGTCACTCCCCTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 943-1331 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000157.1 Aliivibrio fischeri strain FF227 FF227_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 943 28 100.0 32 ............................ ATTACACGGTCTTTAGATAATGATTCAATATC 1003 28 100.0 32 ............................ AGAGGCCCATTTTTTTATGGTTTTTCCTATTC 1063 28 100.0 32 ............................ AACCTCACTAATCATTCTAAGTGCAACGTTAT 1123 28 100.0 33 ............................ ATAAATCACTCTCTTACTTGTTAGTTAATTTAT 1184 28 100.0 32 ............................ CATTGCTGCAAGCAAGACTTATATCTCCTGAG 1244 28 100.0 32 ............................ TTGAGGTATTGTTGATGGTACGTCACTCCCCT 1304 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGAAAAAAGCAGATAAAGATAGCGTAATCATGGCGCTGTTCACTGCCGTACAGGCAGCTTAGAAATCCCCGCGTTCCCGCGCGGGGATTCTATTTAAGTTCACTGCCGTACAGGCAGCTTAGAAATGGACGACGAAGAGTATAAAGATTTTTTAGACGTTCACTGCCGTACAGGCAGCTTAGAAAGTACTGAGTTAGTGTGCATCTTACAACCTCGTGTTCACTGCCGTACAGGCAGCTTAGAAAGCCCGTGACATTAGGGTCTAAGGTGTCCGCTTGTTCACTGCCGTACAGGCAGCTTAGAAAACATAGAAAATAGTTTTCATTTTGATTAAAATGTTCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAAAAGTCTTTTTTAAATTTATAATTATTAACGAGTTCACTGCCGTACAGGCAGCTTAGAAAGTTGATGTAAAATTCTTACCCCTCATCATCGAGTTCACTGCCGTACAGGCAGCTTAGAAACATCAAGCCAAGTACTATATTTGAGATGTACAGTTCACTGCCGTACAGGCAGCTTAGAAAACCTGCGTGTACATAAGATTGCACTGCTACATGTTCACTGCCGTACAGGCAGCTTAGAAAAATAAATGTGATGATTATTGAACCAAACAACCGTTCACTGCCGTACAGGCAGCTTAGAAAGTCATACCAATAAGTCATACGCATTGGCAGGCGTTCACTGCCGTACAGGCAGCTTAGAAAACGCAAAAAAGAATGATGGAGCATAACCTTTGGTTCACTGCCGTACAGGCAGCTTGTTATTATCTAAATACTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1428-1815 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000157.1 Aliivibrio fischeri strain FF227 FF227_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1428 28 100.0 32 ............................ GTTGATGTAAAATTCTTACCCCTCATCATCGA 1488 28 100.0 32 ............................ CATCAAGCCAAGTACTATATTTGAGATGTACA 1548 28 100.0 32 ............................ ACCTGCGTGTACATAAGATTGCACTGCTACAT 1608 28 100.0 32 ............................ AATAAATGTGATGATTATTGAACCAAACAACC 1668 28 100.0 32 ............................ GTCATACCAATAAGTCATACGCATTGGCAGGC 1728 28 100.0 32 ............................ ACGCAAAAAAGAATGATGGAGCATAACCTTTG 1788 28 85.7 0 .......................GTT.T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNGTTCACTGCCGTACAGGCAGCTTAGAAAATTACACGGTCTTTAGATAATGATTCAATATCGTTCACTGCCGTACAGGCAGCTTAGAAAAGAGGCCCATTTTTTTATGGTTTTTCCTATTCGTTCACTGCCGTACAGGCAGCTTAGAAAAACCTCACTAATCATTCTAAGTGCAACGTTATGTTCACTGCCGTACAGGCAGCTTAGAAAATAAATCACTCTCTTACTTGTTAGTTAATTTATGTTCACTGCCGTACAGGCAGCTTAGAAACATTGCTGCAAGCAAGACTTATATCTCCTGAGGTTCACTGCCGTACAGGCAGCTTAGAAATTGAGGTATTGTTGATGGTACGTCACTCCCCTGTTCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAAAAGTCTTTTTTAAATTTATAATTATTAACGA # Right flank : TTATCTAAATACTTTTTGAATGTGTTAAACCTTATATTTTTTGCGCCTTTACAATCTTTACTTTTTTATTCTGGTTAATAATAACCATTTTCATTATAGTGAATCGAAATACGAATAGTTATCACTTGAGTGTAAAGAATATGAAAAAAAGTATCGCTACAATGTTATTTGGTTTATTAGTTTCTGCATCAAGTTATGCTGAAACGATTACCGTTTCTCATCAATTAGGCAAAACGACGCTTGAGACAAAACCTCAACGTGTTGTTGTTATTGGTACAGGAACGTTAGATGCCATTGATTATTTTGGTATTAAACCAGTTGCGGTAACTCAGGCGACGACAATGCCTTCTTACTTACTAAAGTATAAAACGAAAGAATATGCTTCTTCTGGTAGCTTAAGTGAGCCTGATTTTGAAACTATTTACATGCAAAAACCGGATGTGATCATTATTGGTTCACGAGCGGTAAAAGCATATAAAGATCTGTCTGAAATCGCACCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138810-139077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJW01000057.1 Aliivibrio fischeri strain FF227 FF227_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138810 28 100.0 32 ............................ GTTAACGATATCTTACCAAAAAGCAAACACAT 138870 28 100.0 32 ............................ ATTAATCATAATTTTACCTTTTATTTATCTGC 138930 28 100.0 32 ............................ TAACTGGCATGGCTTTGATTAAATCTTCCTTT 138990 28 100.0 32 ............................ AAGAGAACAGAGCAAACTCATAAGCGTCATTA 139050 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAAGCGATTTGAAGCAATTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAGTATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAGCATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTTCCTTGGTTTTAACCAAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAATAGGTAGGGAAAATTAGGTAAAAATGGGTATTTTTACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //