Array 1 11276-12219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQX01000005.1 Lactobacillus crispatus strain UMNLC7 crispatus9I5S20113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11276 29 100.0 32 ............................. ATTGAACCGTCCGCTTATGTTGCTGCGCCGGT 11337 29 96.6 32 ............................C TCACCAGTCCAAGAAACAACATTCAATACGCG 11398 29 100.0 32 ............................. AGCGGATGAGTTAGCTCGTATCTCACCGAATA 11459 29 100.0 32 ............................. AAACATGTCATGGAATGAACCATTTTGAATGT 11520 29 100.0 32 ............................. TTAAGTGATAAGAAAGATCAAGAAATTGATCA 11581 29 96.6 32 ............................C ACATAACCCGAGCCAAAACGCAAAAGAAAACT 11642 29 100.0 32 ............................. ATCTTTTACAAGGCGGAGATTTGAGCAACACT 11703 29 100.0 32 ............................. GATTGCACCTATGGCAGTGATTGCGGCTGTTG 11764 29 96.6 32 ............................C ATCATTTAGAGCCATGCTTTAAATCCTCCTTT 11825 29 100.0 32 ............................. TGTATCAATGCTAATAAGAACGTTTTACCTGG 11886 29 100.0 32 ............................. TGTCATCACATCTGTAGATTTAAAAAGATTGG 11947 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 12008 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 12069 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 12130 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 12191 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 235-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQX01000065.1 Lactobacillus crispatus strain UMNLC7 crispatus9I5S20178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234 29 100.0 32 ............................. TGTCCAAACCTTCTACAATTCGTTGTATTTTG 173 29 100.0 32 ............................. GGCTTATGGCATCAGTCATGGCTTTTGACGTT 112 29 96.6 32 ............................T TCTTCGATTTGTATAAATATAGAAATTTGTCG 51 28 72.4 0 .........C...A......A.C-..TTT | T [33] ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : ATATTTGAATGATAAAAACCTTGAGCAATCTATCTGGATTCTTTTAGATAATTTAAATTTATTAAAATTACTTTTAGTTGCTGAAACTGATTATAGTCATTTTTTTATAAAGTTGCGAAAGTTAAATGAAAAATTTAAAGGTATTTCTAAACCATATCATCATATGTCTAAAAAAACACATACTGTTAATCAAATGAGAAGAGCAATTAATGCTGTGATTGATAATATAGTTGGTGCAAACAATATGAAACTGAAGGATTTGCATGATGATCAGATTATTCAGATATATGTTGAAGCCAGTGCGCTAAATCAAAATTGGTTAAAGCTTACTGGTAACGAGGGGGTAAGGCATCGAAAACGAAAAAAATCAGTCGGAGTTTATTCAATTGAGTTTGGATATTTAGACATTGCTTACATGTGTTGAAAAATGGATCTTCTTAAAAGTAATGAAAAATGTTATGATTTGAATTGAGGATCATTGATATAATGGGATTTGTTTA # Right flank : TAAACTAAGTGTATAATTTTTTG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7750-8084 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQX01000055.1 Lactobacillus crispatus strain UMNLC7 crispatus9I5S20163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7750 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 7811 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 7873 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 7934 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 7995 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 8056 28 75.0 0 ...........ACA.........A.ATA | C [8078] ========== ====== ====== ====== ============================ ================================== ================== 6 28 92.3 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 10812-11697 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQX01000055.1 Lactobacillus crispatus strain UMNLC7 crispatus9I5S20163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10812 29 96.6 32 ............................C ACTAGTTAAACTTTTTACCTTAGTATAATGTC 10873 29 96.6 32 ............................C TATGACAGCGTCCCATACTGGCAAGGTACAGG 10934 29 100.0 32 ............................. ATAGTTTTGTGCGTCTTGAATTGTTTGGTCAG 10995 29 96.6 32 ............................C GATGAAAACGCCACTTTAAAAGTTACCGATAA 11056 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 11117 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 11179 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 11240 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 11301 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 11362 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 11425 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 11486 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 11547 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 11607 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 11668 29 75.9 0 ...........AC.....A.TC..T.A.. | T [11684] ========== ====== ====== ====== ============================= ================================== ================== 15 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //