Array 1 165409-163488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOV01000131.1 Salmonella enterica strain NGUA-23_S11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165408 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 165347 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 165286 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 165225 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 165164 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 165103 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 165042 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 164981 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 164920 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164859 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 164798 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 164737 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 164676 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 164615 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 164554 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 164493 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 164432 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 164371 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 164310 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 164249 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 164188 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164127 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 164066 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 164005 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163944 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163883 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163822 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163761 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163700 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163639 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163578 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163517 29 100.0 0 ............................. | A [163490] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185144-183041 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOV01000131.1 Salmonella enterica strain NGUA-23_S11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185143 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 185082 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 185021 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 184960 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 184898 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 184837 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 184776 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 184715 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 184654 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 184593 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 184532 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 184471 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 184410 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 184349 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 184288 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 184227 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 184166 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 184105 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 184044 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 183983 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 183922 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 183861 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 183800 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 183739 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 183678 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 183617 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 183556 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 183495 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 183434 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 183373 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 183312 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 183251 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 183190 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 183129 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 183068 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //